Wall clock time and date at job start Tue Mar 31 2020 20:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47155 * 2 1 4 4 H 1.09000 * 110.05408 * 306.73106 * 3 2 1 5 5 C 1.54369 * 110.04743 * 68.20724 * 3 2 1 6 6 C 1.54890 * 104.19933 * 142.91069 * 5 3 2 7 7 C 1.54888 * 102.74622 * 322.03013 * 6 5 3 8 8 C 1.53876 * 110.03334 * 185.31948 * 3 2 1 9 9 H 1.08997 * 110.03414 * 121.37890 * 8 3 2 10 10 C 1.50701 * 110.03148 * 359.97438 * 8 3 2 11 11 O 1.21280 * 120.00270 * 275.28190 * 10 8 3 12 12 N 1.34784 * 119.99691 * 95.27817 * 10 8 3 13 13 C 1.46496 * 119.99740 * 179.97438 * 12 10 8 14 14 H 1.08997 * 112.91464 * 336.25774 * 13 12 10 15 15 C 1.53786 * 113.61114 * 107.50880 * 13 12 10 16 16 C 1.53775 * 87.08300 * 89.11444 * 15 13 12 17 17 H 1.09002 * 113.69219 * 270.87627 * 16 15 13 18 18 N 1.46902 * 113.61707 * 139.98213 * 16 15 13 19 19 C 1.46894 * 110.99970 * 107.50071 * 18 16 15 20 20 C 1.50706 * 109.46845 * 180.02562 * 19 18 16 21 21 O 1.21289 * 119.99914 * 359.97438 * 20 19 18 22 22 N 1.34776 * 120.00176 * 180.02562 * 20 19 18 23 23 C 1.37090 * 120.00414 * 180.02562 * 22 20 19 24 24 H 1.08004 * 119.99477 * 359.97438 * 23 22 20 25 25 C 1.38948 * 120.00508 * 180.02562 * 23 22 20 26 26 N 1.31417 * 119.99691 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00454 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47012 * 59.99670 * 27 25 23 29 29 H 1.48493 * 109.47410 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47266 * 300.00252 * 27 25 23 31 31 C 1.53781 * 113.61379 * 205.00332 * 13 12 10 32 32 H 1.09003 * 109.47169 * 300.00345 * 1 2 3 33 33 H 1.08999 * 109.46845 * 59.99895 * 1 2 3 34 34 H 1.08993 * 109.47156 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46889 * 240.00106 * 2 1 3 36 36 H 1.08999 * 109.47248 * 119.99748 * 2 1 3 37 37 H 1.08999 * 110.51006 * 24.21847 * 5 3 2 38 38 H 1.09005 * 110.57368 * 261.63357 * 5 3 2 39 39 H 1.08995 * 110.75581 * 203.72120 * 6 5 3 40 40 H 1.08991 * 110.91470 * 80.41704 * 6 5 3 41 41 H 1.09003 * 110.48767 * 279.26737 * 7 6 5 42 42 H 1.08998 * 110.60198 * 156.67376 * 7 6 5 43 43 H 0.96998 * 119.99642 * 0.02562 * 12 10 8 44 44 H 1.09002 * 113.61100 * 203.66135 * 15 13 12 45 45 H 1.08996 * 113.61415 * 334.56354 * 15 13 12 46 46 H 1.00900 * 111.00006 * 231.46067 * 18 16 15 47 47 H 1.08994 * 109.47520 * 300.00098 * 19 18 16 48 48 H 1.08996 * 109.47392 * 60.00903 * 19 18 16 49 49 H 0.97002 * 119.99461 * 359.97438 * 22 20 19 50 50 H 0.96994 * 119.99845 * 180.02562 * 26 25 23 51 51 H 1.08996 * 113.61629 * 25.43003 * 31 13 12 52 52 H 1.08993 * 113.61421 * 156.25617 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5873 1.9990 -0.8206 5 6 1.7088 2.1209 1.3465 6 6 2.9389 3.0176 1.6329 7 6 4.1194 2.1479 1.1338 8 6 3.5729 1.4597 -0.1340 9 1 3.8639 2.0238 -1.0201 10 6 4.0990 0.0503 -0.2233 11 8 4.3120 -0.5828 0.7890 12 7 4.3329 -0.5066 -1.4282 13 6 4.8449 -1.8764 -1.5151 14 1 5.3733 -2.1898 -0.6147 15 6 3.8005 -2.8946 -2.0023 16 6 4.2684 -2.5724 -3.4313 17 1 3.7305 -1.7437 -3.8919 18 7 4.3532 -3.7520 -4.3028 19 6 3.2675 -3.7545 -5.2924 20 6 3.3869 -4.9768 -6.1658 21 8 4.2881 -5.7677 -5.9823 22 7 2.4930 -5.1907 -7.1515 23 6 2.6013 -6.3028 -7.9458 24 1 3.4032 -7.0074 -7.7818 25 6 1.6800 -6.5230 -8.9624 26 7 0.7051 -5.6648 -9.1628 27 14 1.8280 -8.0380 -10.0450 28 1 1.7330 -9.2584 -9.2042 29 1 0.7316 -8.0397 -11.0466 30 1 3.1374 -8.0201 -10.7452 31 6 5.6164 -2.1645 -2.8138 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 1.5903 1.3740 2.1315 38 1 0.8071 2.7269 1.2585 39 1 3.0309 3.2178 2.7003 40 1 2.8806 3.9492 1.0702 41 1 4.3901 1.4053 1.8844 42 1 4.9787 2.7720 0.8887 43 1 4.1629 -0.0001 -2.2378 44 1 4.0121 -3.9185 -1.6941 45 1 2.7719 -2.5951 -1.8016 46 1 5.2541 -3.8040 -4.7542 47 1 2.3068 -3.7686 -4.7778 48 1 3.3362 -2.8587 -5.9094 49 1 1.7726 -4.5580 -7.2985 50 1 0.0618 -5.8187 -9.8722 51 1 6.0536 -1.2755 -3.2683 52 1 6.3254 -2.9878 -2.7270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566803282.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:35 Heat of formation + Delta-G solvation = -74.028689 kcal Electronic energy + Delta-G solvation = -29296.300786 eV Core-core repulsion = 25295.158543 eV Total energy + Delta-G solvation = -4001.142243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.95621 -39.35903 -38.13059 -37.37111 -34.58290 -33.83173 -33.43938 -32.48738 -31.19939 -29.63473 -27.91781 -26.88309 -25.79486 -24.51217 -23.39948 -22.91686 -22.01315 -20.92631 -19.58972 -19.54081 -19.06420 -17.88433 -17.26325 -16.50580 -16.31293 -15.97743 -15.36933 -15.23270 -14.97163 -14.77203 -14.63651 -14.53774 -14.18393 -13.88007 -13.72264 -13.53487 -13.35833 -12.92589 -12.54906 -12.45640 -12.36224 -12.10034 -11.95546 -11.80232 -11.58404 -11.58065 -11.39084 -11.36692 -11.20565 -11.02828 -10.97234 -10.87117 -10.73582 -10.60331 -10.52799 -10.44508 -10.21393 -9.89291 -9.50644 -9.19035 -8.44968 -8.08266 -7.96526 -6.42257 -3.83100 2.42031 2.90337 3.19773 3.25400 3.29939 3.90294 4.07420 4.10972 4.18507 4.27055 4.36805 4.40800 4.48260 4.70834 4.83502 4.85649 4.88676 4.97194 5.01877 5.03651 5.17746 5.19602 5.22816 5.26005 5.30125 5.36974 5.42283 5.49528 5.54786 5.62594 5.68944 5.71601 5.75451 5.77405 5.78833 5.84767 5.89306 5.91097 5.97917 6.01281 6.04736 6.10518 6.12883 6.25892 6.46722 7.25828 7.29004 7.54512 7.65341 8.03281 8.05614 8.60703 9.17236 9.53660 10.05212 10.75424 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020258 B = 0.001896 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.858883 B =14762.950295 C =15687.944504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.076 4.076 4 H 0.079 0.921 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.113 4.113 8 C -0.112 4.112 9 H 0.088 0.912 10 C 0.529 3.471 11 O -0.537 6.537 12 N -0.714 5.714 13 C 0.118 3.882 14 H 0.104 0.896 15 C -0.135 4.135 16 C 0.060 3.940 17 H 0.068 0.932 18 N -0.655 5.655 19 C 0.050 3.950 20 C 0.440 3.560 21 O -0.583 6.583 22 N -0.564 5.564 23 C -0.300 4.300 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.931 3.069 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.274 1.274 31 C -0.148 4.148 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.399 0.601 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.350 0.650 47 H 0.085 0.915 48 H 0.042 0.958 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.070 0.930 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.365 20.833 18.206 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.095 4.095 4 H 0.098 0.902 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.151 4.151 8 C -0.133 4.133 9 H 0.107 0.893 10 C 0.316 3.684 11 O -0.414 6.414 12 N -0.365 5.365 13 C 0.012 3.988 14 H 0.122 0.878 15 C -0.175 4.175 16 C -0.051 4.051 17 H 0.086 0.914 18 N -0.288 5.288 19 C -0.082 4.082 20 C 0.226 3.774 21 O -0.468 6.468 22 N -0.200 5.200 23 C -0.429 4.429 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.544 5.544 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 C -0.187 4.187 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.233 0.767 44 H 0.118 0.882 45 H 0.084 0.916 46 H 0.171 0.829 47 H 0.103 0.897 48 H 0.060 0.940 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.089 0.911 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.646 19.407 19.329 27.518 hybrid contribution -0.352 0.584 -1.945 2.061 sum 2.294 19.991 17.385 26.592 Atomic orbital electron populations 1.21755 0.95456 1.01863 1.01644 1.21865 0.96434 0.95548 1.03021 1.21745 0.91948 0.97016 0.98769 0.90215 1.22465 0.97834 0.98565 0.96640 1.22475 0.94581 0.97963 1.01100 1.22369 0.97735 0.98857 0.96141 1.22064 0.97018 0.93226 1.01010 0.89322 1.20444 0.76269 0.88563 0.83152 1.90684 1.51681 1.63922 1.35096 1.45836 1.67097 1.15172 1.08389 1.21754 0.96293 0.81712 0.99008 0.87810 1.23540 0.98747 1.00004 0.95165 1.23097 0.96462 0.91837 0.93693 0.91395 1.60215 1.06617 1.38492 1.23453 1.21727 0.96224 0.96780 0.93511 1.19828 0.85307 0.88589 0.83721 1.90521 1.35755 1.48279 1.72202 1.41861 1.26365 1.23347 1.28459 1.19657 1.12537 1.00857 1.09885 0.87972 1.25267 0.95517 0.99045 0.98147 1.69605 1.15389 1.36321 1.33053 0.85908 0.77787 0.81208 0.79260 1.19867 1.20982 1.19929 1.23605 0.97272 1.02096 0.95702 0.92692 0.92807 0.92624 0.91639 0.90854 0.91113 0.91480 0.91300 0.91472 0.89609 0.91470 0.76658 0.88199 0.91596 0.82913 0.89712 0.93977 0.77485 0.91828 0.91143 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.77 37.16 0.36 -0.80 16 2 C -0.13 -1.13 4.12 -26.73 -0.11 -1.24 16 3 C -0.08 -0.53 2.93 -89.45 -0.26 -0.79 16 4 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 5 C -0.12 -0.77 5.56 -25.02 -0.14 -0.91 16 6 C -0.12 -0.74 6.91 -24.74 -0.17 -0.91 16 7 C -0.11 -0.83 6.32 -25.07 -0.16 -0.98 16 8 C -0.11 -0.81 3.29 -90.65 -0.30 -1.11 16 9 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 10 C 0.53 5.21 4.66 -10.98 -0.05 5.16 16 11 O -0.54 -7.30 14.57 5.56 0.08 -7.22 16 12 N -0.71 -6.06 4.80 -53.02 -0.25 -6.31 16 13 C 0.12 1.18 4.32 -67.12 -0.29 0.89 16 14 H 0.10 1.19 7.47 -51.93 -0.39 0.80 16 15 C -0.13 -1.55 7.68 -25.92 -0.20 -1.75 16 16 C 0.06 0.69 4.02 -66.90 -0.27 0.42 16 17 H 0.07 0.71 7.87 -51.93 -0.41 0.31 16 18 N -0.66 -10.26 6.18 -107.13 -0.66 -10.92 16 19 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 20 C 0.44 10.39 7.82 -10.98 -0.09 10.30 16 21 O -0.58 -15.87 15.78 5.55 0.09 -15.78 16 22 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 23 C -0.30 -8.39 9.68 -14.94 -0.14 -8.53 16 24 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 27 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 30 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 31 C -0.15 -1.41 7.40 -25.91 -0.19 -1.60 16 32 H 0.05 0.39 7.53 -51.93 -0.39 0.00 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.61 6.86 -51.93 -0.36 0.25 16 36 H 0.07 0.79 7.05 -51.93 -0.37 0.43 16 37 H 0.07 0.53 7.76 -51.93 -0.40 0.13 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.81 6.91 -51.93 -0.36 0.45 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.40 2.53 8.70 -40.82 -0.35 2.18 16 44 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.35 5.63 8.25 -39.29 -0.32 5.31 16 47 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.04 0.66 8.13 -51.93 -0.42 0.23 16 49 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 51 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 412.24 15.07 6.21 6.21 Total: -1.00 -32.51 412.24 -10.13 -42.63 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -9.10 Total: 14.02 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.13 Total: -0.52 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.25 Total: -55.41 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: 0.17 Total: -23.00 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.51 -10.13 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566803282.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.395 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds