Wall clock time and date at job start Tue Mar 31 2020 20:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47155 * 2 1 4 4 H 1.09000 * 110.05408 * 306.73106 * 3 2 1 5 5 C 1.54369 * 110.04743 * 68.20724 * 3 2 1 6 6 C 1.54890 * 104.19933 * 142.91069 * 5 3 2 7 7 C 1.54888 * 102.74622 * 322.03013 * 6 5 3 8 8 C 1.53876 * 110.03334 * 185.31948 * 3 2 1 9 9 H 1.08997 * 110.03414 * 121.37890 * 8 3 2 10 10 C 1.50701 * 110.03148 * 359.97438 * 8 3 2 11 11 O 1.21280 * 120.00270 * 275.28190 * 10 8 3 12 12 N 1.34784 * 119.99691 * 95.27817 * 10 8 3 13 13 C 1.46496 * 119.99740 * 179.97438 * 12 10 8 14 14 H 1.08997 * 112.91464 * 336.25774 * 13 12 10 15 15 C 1.53786 * 113.61114 * 107.50880 * 13 12 10 16 16 C 1.53775 * 87.08300 * 89.11444 * 15 13 12 17 17 H 1.09002 * 113.69219 * 270.87627 * 16 15 13 18 18 N 1.46902 * 113.61707 * 139.98213 * 16 15 13 19 19 C 1.46894 * 110.99970 * 107.50071 * 18 16 15 20 20 C 1.50706 * 109.46845 * 180.02562 * 19 18 16 21 21 O 1.21289 * 119.99914 * 359.97438 * 20 19 18 22 22 N 1.34776 * 120.00176 * 180.02562 * 20 19 18 23 23 C 1.37090 * 120.00414 * 180.02562 * 22 20 19 24 24 H 1.08004 * 119.99477 * 359.97438 * 23 22 20 25 25 C 1.38948 * 120.00508 * 180.02562 * 23 22 20 26 26 N 1.31417 * 119.99691 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00454 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47012 * 59.99670 * 27 25 23 29 29 H 1.48493 * 109.47410 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47266 * 300.00252 * 27 25 23 31 31 C 1.53781 * 113.61379 * 205.00332 * 13 12 10 32 32 H 1.09003 * 109.47169 * 300.00345 * 1 2 3 33 33 H 1.08999 * 109.46845 * 59.99895 * 1 2 3 34 34 H 1.08993 * 109.47156 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46889 * 240.00106 * 2 1 3 36 36 H 1.08999 * 109.47248 * 119.99748 * 2 1 3 37 37 H 1.08999 * 110.51006 * 24.21847 * 5 3 2 38 38 H 1.09005 * 110.57368 * 261.63357 * 5 3 2 39 39 H 1.08995 * 110.75581 * 203.72120 * 6 5 3 40 40 H 1.08991 * 110.91470 * 80.41704 * 6 5 3 41 41 H 1.09003 * 110.48767 * 279.26737 * 7 6 5 42 42 H 1.08998 * 110.60198 * 156.67376 * 7 6 5 43 43 H 0.96998 * 119.99642 * 0.02562 * 12 10 8 44 44 H 1.09002 * 113.61100 * 203.66135 * 15 13 12 45 45 H 1.08996 * 113.61415 * 334.56354 * 15 13 12 46 46 H 1.00900 * 111.00006 * 231.46067 * 18 16 15 47 47 H 1.08994 * 109.47520 * 300.00098 * 19 18 16 48 48 H 1.08996 * 109.47392 * 60.00903 * 19 18 16 49 49 H 0.97002 * 119.99461 * 359.97438 * 22 20 19 50 50 H 0.96994 * 119.99845 * 180.02562 * 26 25 23 51 51 H 1.08996 * 113.61629 * 25.43003 * 31 13 12 52 52 H 1.08993 * 113.61421 * 156.25617 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5873 1.9990 -0.8206 5 6 1.7088 2.1209 1.3465 6 6 2.9389 3.0176 1.6329 7 6 4.1194 2.1479 1.1338 8 6 3.5729 1.4597 -0.1340 9 1 3.8639 2.0238 -1.0201 10 6 4.0990 0.0503 -0.2233 11 8 4.3120 -0.5828 0.7890 12 7 4.3329 -0.5066 -1.4282 13 6 4.8449 -1.8764 -1.5151 14 1 5.3733 -2.1898 -0.6147 15 6 3.8005 -2.8946 -2.0023 16 6 4.2684 -2.5724 -3.4313 17 1 3.7305 -1.7437 -3.8919 18 7 4.3532 -3.7520 -4.3028 19 6 3.2675 -3.7545 -5.2924 20 6 3.3869 -4.9768 -6.1658 21 8 4.2881 -5.7677 -5.9823 22 7 2.4930 -5.1907 -7.1515 23 6 2.6013 -6.3028 -7.9458 24 1 3.4032 -7.0074 -7.7818 25 6 1.6800 -6.5230 -8.9624 26 7 0.7051 -5.6648 -9.1628 27 14 1.8280 -8.0380 -10.0450 28 1 1.7330 -9.2584 -9.2042 29 1 0.7316 -8.0397 -11.0466 30 1 3.1374 -8.0201 -10.7452 31 6 5.6164 -2.1645 -2.8138 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 1.5903 1.3740 2.1315 38 1 0.8071 2.7269 1.2585 39 1 3.0309 3.2178 2.7003 40 1 2.8806 3.9492 1.0702 41 1 4.3901 1.4053 1.8844 42 1 4.9787 2.7720 0.8887 43 1 4.1629 -0.0001 -2.2378 44 1 4.0121 -3.9185 -1.6941 45 1 2.7719 -2.5951 -1.8016 46 1 5.2541 -3.8040 -4.7542 47 1 2.3068 -3.7686 -4.7778 48 1 3.3362 -2.8587 -5.9094 49 1 1.7726 -4.5580 -7.2985 50 1 0.0618 -5.8187 -9.8722 51 1 6.0536 -1.2755 -3.2683 52 1 6.3254 -2.9878 -2.7270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566803282.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:34 Heat of formation + Delta-G solvation = -96.715256 kcal Electronic energy + Delta-G solvation = -29297.284549 eV Core-core repulsion = 25295.158543 eV Total energy + Delta-G solvation = -4002.126006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.71638 -40.39297 -39.77426 -38.15989 -36.13298 -35.39560 -34.06820 -33.56611 -33.18728 -30.24838 -28.51099 -28.39900 -26.70658 -26.15114 -24.35828 -23.69636 -22.79381 -21.46555 -21.14770 -20.36287 -20.14812 -19.86195 -18.08702 -17.72222 -17.18309 -16.87912 -16.79561 -16.41788 -16.14461 -15.88636 -15.78631 -15.51923 -15.25502 -15.22503 -14.88518 -14.47223 -14.18652 -14.11494 -13.55986 -13.52775 -13.36268 -13.29615 -13.07087 -13.02640 -12.86805 -12.60984 -12.44303 -12.40187 -12.20276 -12.12605 -11.87908 -11.78603 -11.53489 -11.49559 -11.48355 -11.47111 -11.44845 -11.34453 -10.68923 -10.33669 -10.02208 -10.00258 -9.30679 -8.47026 -5.95801 1.39535 1.41545 1.52424 1.65746 2.04933 2.17466 2.29023 2.96093 3.20247 3.47743 3.49916 3.56680 3.61808 3.67909 3.71992 3.98349 4.08538 4.12281 4.21970 4.30029 4.36606 4.42224 4.46974 4.53889 4.58354 4.58965 4.62105 4.67677 4.77953 4.79456 4.85193 4.86178 4.89881 5.00864 5.05474 5.08483 5.13227 5.16060 5.19140 5.24632 5.27593 5.37748 5.40363 5.44326 5.54576 5.61392 5.93167 6.16609 6.43594 6.59617 6.60186 7.12113 7.31067 7.55822 8.11244 8.70075 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020258 B = 0.001896 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.858883 B =14762.950295 C =15687.944504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C -0.073 4.073 4 H 0.101 0.899 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.115 4.115 8 C -0.108 4.108 9 H 0.119 0.881 10 C 0.526 3.474 11 O -0.581 6.581 12 N -0.702 5.702 13 C 0.127 3.873 14 H 0.086 0.914 15 C -0.138 4.138 16 C 0.062 3.938 17 H 0.090 0.910 18 N -0.672 5.672 19 C 0.066 3.934 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.335 4.335 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.273 1.273 29 H -0.270 1.270 30 H -0.271 1.271 31 C -0.133 4.133 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.414 0.586 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.347 0.653 47 H 0.098 0.902 48 H 0.071 0.929 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.094 0.906 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 23.300 17.220 29.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.091 4.091 4 H 0.120 0.880 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.153 4.153 8 C -0.130 4.130 9 H 0.137 0.863 10 C 0.315 3.685 11 O -0.461 6.461 12 N -0.354 5.354 13 C 0.020 3.980 14 H 0.104 0.896 15 C -0.178 4.178 16 C -0.048 4.048 17 H 0.108 0.892 18 N -0.305 5.305 19 C -0.066 4.066 20 C 0.224 3.776 21 O -0.511 6.511 22 N -0.210 5.210 23 C -0.465 4.465 24 H 0.096 0.904 25 C -0.213 4.213 26 N -0.560 5.560 27 Si 0.817 3.183 28 H -0.199 1.199 29 H -0.194 1.194 30 H -0.196 1.196 31 C -0.172 4.172 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.251 0.749 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.167 0.833 47 H 0.116 0.884 48 H 0.089 0.911 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.112 0.888 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.139 21.918 18.330 28.652 hybrid contribution -0.190 -0.198 -1.554 1.578 sum 1.949 21.720 16.775 27.513 Atomic orbital electron populations 1.21739 0.94765 1.01469 1.02513 1.21787 0.97023 0.96560 1.01139 1.21783 0.91713 0.95893 0.99760 0.88042 1.22468 0.98860 0.98415 0.95867 1.22472 0.93380 0.98213 1.01492 1.22364 0.98906 0.98552 0.95521 1.22152 0.97063 0.91510 1.02235 0.86316 1.20981 0.75422 0.89443 0.82684 1.90674 1.53539 1.65204 1.36674 1.45726 1.66357 1.14473 1.08809 1.21527 0.95652 0.82204 0.98608 0.89556 1.23502 0.99023 0.99503 0.95742 1.23208 0.98077 0.91001 0.92479 0.89191 1.60177 1.05883 1.41240 1.23201 1.21576 0.97477 0.94326 0.93247 1.20938 0.83749 0.89728 0.83217 1.90489 1.37182 1.50251 1.73144 1.41932 1.27070 1.23035 1.28979 1.19629 1.13024 1.02039 1.11789 0.90370 1.26043 0.94806 1.01717 0.98744 1.69663 1.15556 1.37388 1.33428 0.84989 0.78163 0.77574 0.77619 1.19866 1.19424 1.19623 1.23500 0.96243 1.02778 0.94635 0.92061 0.91614 0.93713 0.92398 0.93854 0.92969 0.89998 0.91231 0.89579 0.92558 0.90148 0.74905 0.90148 0.91890 0.83284 0.88421 0.91149 0.76958 0.91272 0.88768 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.77 71.98 0.70 -1.45 16 2 C -0.13 -2.13 4.12 30.60 0.13 -2.01 16 3 C -0.07 -0.86 2.93 -10.03 -0.03 -0.89 16 4 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 5 C -0.12 -1.36 5.56 31.70 0.18 -1.18 16 6 C -0.12 -1.17 6.91 31.89 0.22 -0.95 16 7 C -0.12 -1.53 6.32 31.67 0.20 -1.33 16 8 C -0.11 -1.35 3.29 -10.81 -0.04 -1.38 16 9 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 10 C 0.53 9.98 4.66 87.66 0.41 10.39 16 11 O -0.58 -16.37 14.57 -3.03 -0.04 -16.42 16 12 N -0.70 -10.73 4.80 -440.03 -2.11 -12.84 16 13 C 0.13 2.43 4.32 45.52 0.20 2.63 16 14 H 0.09 2.02 7.47 -2.39 -0.02 2.00 16 15 C -0.14 -3.12 7.68 31.12 0.24 -2.88 16 16 C 0.06 1.31 4.02 45.44 0.18 1.49 16 17 H 0.09 1.56 7.87 -2.39 -0.02 1.54 16 18 N -0.67 -20.32 6.18 -492.86 -3.05 -23.36 16 19 C 0.07 2.21 6.01 85.56 0.51 2.72 16 20 C 0.44 20.68 7.82 87.66 0.69 21.36 16 21 O -0.62 -34.67 15.78 -3.06 -0.05 -34.72 16 22 N -0.57 -29.35 5.29 -306.99 -1.62 -30.97 16 23 C -0.34 -19.08 9.68 84.04 0.81 -18.27 16 24 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 25 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 26 N -0.92 -49.42 13.05 21.66 0.28 -49.14 16 27 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 29 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 30 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 31 C -0.13 -2.28 7.40 31.12 0.23 -2.05 16 32 H 0.06 0.80 7.53 -2.39 -0.02 0.78 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 1.03 6.86 -2.39 -0.02 1.02 16 36 H 0.04 0.98 7.05 -2.39 -0.02 0.97 16 37 H 0.05 0.79 7.76 -2.39 -0.02 0.77 16 38 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 1.10 6.91 -2.39 -0.02 1.08 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.41 3.93 8.70 -92.71 -0.81 3.12 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.35 10.88 8.25 -89.69 -0.74 10.14 16 47 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 48 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 49 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 50 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 51 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 52 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -72.69 412.24 -0.81 -73.50 By element: Atomic # 1 Polarization: 44.40 SS G_CDS: -1.34 Total: 43.06 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 5.10 Total: 5.94 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -6.50 Total: -116.32 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -0.09 Total: -51.13 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -72.69 -0.81 -73.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566803282.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.212 kcal (2) G-P(sol) polarization free energy of solvation -72.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds