Wall clock time and date at job start Tue Mar 31 2020 20:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47286 * 2 1 4 4 H 1.09006 * 110.43291 * 303.90788 * 3 2 1 5 5 C 1.54266 * 110.48847 * 66.44865 * 3 2 1 6 6 C 1.53869 * 106.59800 * 142.42662 * 5 3 2 7 7 C 1.54266 * 106.60031 * 359.97438 * 6 5 3 8 8 C 1.54894 * 104.31305 * 336.32486 * 7 6 5 9 9 H 1.08993 * 110.76071 * 279.69749 * 8 7 6 10 10 C 1.50702 * 110.75529 * 156.31998 * 8 7 6 11 11 O 1.21279 * 119.99876 * 241.45748 * 10 8 7 12 12 N 1.34772 * 119.99842 * 61.46066 * 10 8 7 13 13 C 1.46499 * 120.00119 * 180.02562 * 12 10 8 14 14 H 1.09003 * 112.84180 * 334.65766 * 13 12 10 15 15 C 1.53776 * 113.62132 * 105.85985 * 13 12 10 16 16 C 1.54043 * 86.98705 * 89.16174 * 15 13 12 17 17 H 1.09004 * 113.61374 * 270.88982 * 16 15 13 18 18 N 1.46899 * 113.69711 * 139.99341 * 16 15 13 19 19 C 1.46897 * 110.99971 * 107.46660 * 18 16 15 20 20 C 1.50703 * 109.46975 * 180.02562 * 19 18 16 21 21 O 1.21294 * 120.00086 * 359.97438 * 20 19 18 22 22 N 1.34779 * 120.00084 * 179.97438 * 20 19 18 23 23 C 1.37097 * 119.99788 * 179.97438 * 22 20 19 24 24 H 1.08003 * 120.00411 * 359.97438 * 23 22 20 25 25 C 1.38954 * 119.99899 * 180.02562 * 23 22 20 26 26 N 1.31411 * 119.99862 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00220 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47282 * 89.99493 * 27 25 23 29 29 H 1.48495 * 109.47229 * 209.99894 * 27 25 23 30 30 H 1.48507 * 109.47256 * 329.99752 * 27 25 23 31 31 C 1.53779 * 113.61273 * 203.47255 * 13 12 10 32 32 H 1.09003 * 109.46780 * 60.00620 * 1 2 3 33 33 H 1.09000 * 109.47194 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47483 * 300.00454 * 1 2 3 35 35 H 1.08997 * 109.47483 * 239.99546 * 2 1 3 36 36 H 1.09003 * 109.46780 * 119.99380 * 2 1 3 37 37 H 1.08999 * 110.03060 * 23.13396 * 5 3 2 38 38 H 1.09006 * 110.06829 * 261.72774 * 5 3 2 39 39 H 1.09001 * 110.02983 * 240.71432 * 6 5 3 40 40 H 1.08995 * 110.03881 * 119.28625 * 6 5 3 41 41 H 1.09002 * 110.48629 * 95.07240 * 7 6 5 42 42 H 1.08998 * 110.48744 * 217.58143 * 7 6 5 43 43 H 0.97001 * 120.00107 * 359.97438 * 12 10 8 44 44 H 1.08997 * 113.61869 * 203.66785 * 15 13 12 45 45 H 1.09002 * 113.61200 * 334.56301 * 15 13 12 46 46 H 1.00901 * 110.99859 * 343.50917 * 18 16 15 47 47 H 1.08994 * 109.46919 * 299.99786 * 19 18 16 48 48 H 1.09003 * 109.47581 * 60.00410 * 19 18 16 49 49 H 0.96991 * 119.99851 * 359.97438 * 22 20 19 50 50 H 0.96999 * 120.00091 * 180.02562 * 26 25 23 51 51 H 1.08994 * 113.61901 * 25.42139 * 31 13 12 52 52 H 1.09000 * 113.61379 * 156.25082 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6297 1.9912 -0.8478 5 6 1.6757 2.1441 1.3247 6 6 2.8680 3.0468 1.6864 7 6 3.9157 2.8619 0.5693 8 6 3.5920 1.4720 -0.0330 9 1 4.0072 0.6767 0.5859 10 6 4.1014 1.3713 -1.4477 11 8 3.3245 1.1851 -2.3601 12 7 5.4204 1.4880 -1.6989 13 6 5.9156 1.3906 -3.0742 14 1 5.2564 0.8119 -3.7213 15 6 6.3372 2.7421 -3.6745 16 6 7.7382 2.4706 -3.0943 17 1 7.8680 2.8384 -2.0764 18 7 8.8344 2.8669 -3.9882 19 6 9.5093 4.0732 -3.4909 20 6 10.6248 4.4488 -4.4320 21 8 10.8370 3.7774 -5.4196 22 7 11.3866 5.5308 -4.1762 23 6 12.4018 5.8722 -5.0321 24 1 12.5913 5.2738 -5.9111 25 6 13.1875 6.9874 -4.7682 26 7 12.9573 7.7151 -3.6985 27 14 14.5702 7.4530 -5.9347 28 1 14.0498 8.3745 -6.9765 29 1 15.6535 8.1264 -5.1745 30 1 15.1066 6.2280 -6.5806 31 6 7.3928 0.9739 -3.1689 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 1.5170 1.4031 2.1082 38 1 0.7771 2.7470 1.1938 39 1 3.2881 2.7440 2.6456 40 1 2.5484 4.0879 1.7304 41 1 3.8085 3.6397 -0.1868 42 1 4.9230 2.8721 0.9855 43 1 6.0418 1.6372 -0.9691 44 1 6.3124 2.7628 -4.7639 45 1 5.8339 3.5967 -3.2223 46 1 8.5013 3.0016 -4.9311 47 1 8.7926 4.8923 -3.4322 48 1 9.9197 3.8777 -2.5001 49 1 11.2167 6.0679 -3.3867 50 1 13.5056 8.4938 -3.5144 51 1 7.7412 0.4020 -2.3090 52 1 7.6557 0.5108 -4.1200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566803283.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:38 Heat of formation + Delta-G solvation = -78.674968 kcal Electronic energy + Delta-G solvation = -28780.710396 eV Core-core repulsion = 24779.366675 eV Total energy + Delta-G solvation = -4001.343721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.75275 -39.35705 -38.15463 -37.53330 -34.61512 -33.89573 -33.51321 -32.37738 -31.19917 -29.64872 -27.92388 -26.84334 -25.79102 -24.54669 -23.60663 -22.78386 -22.07401 -20.48597 -19.91924 -19.69304 -19.10297 -17.89641 -17.65919 -16.42808 -16.08541 -15.86772 -15.46878 -15.18752 -14.99076 -14.70273 -14.52882 -14.51685 -14.17301 -13.80530 -13.66780 -13.49941 -13.33947 -13.03151 -12.81581 -12.61653 -12.39921 -12.24278 -12.14750 -11.83667 -11.65464 -11.59931 -11.53911 -11.43124 -11.09770 -11.06630 -10.92039 -10.83960 -10.76152 -10.74724 -10.46410 -10.39686 -10.21875 -9.94171 -9.51763 -9.23874 -8.45736 -8.02842 -7.95832 -6.42591 -3.83366 2.40353 2.89258 3.17381 3.26096 3.32202 3.90004 4.00865 4.09602 4.14390 4.26227 4.31286 4.42780 4.57731 4.71370 4.77255 4.83229 4.86515 4.95093 4.96893 4.99987 5.09086 5.16267 5.21978 5.23741 5.26316 5.33009 5.44267 5.47713 5.53571 5.61954 5.65193 5.67583 5.73909 5.76711 5.78071 5.78955 5.81595 5.86694 5.88857 5.97374 6.01241 6.03247 6.12209 6.25350 6.41940 7.24417 7.27570 7.54496 7.65187 8.01196 8.05621 8.60434 9.17133 9.53456 10.04939 10.75138 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.001701 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.234519 B =16455.788177 C =17325.607378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.070 4.070 4 H 0.086 0.914 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.115 4.115 8 C -0.113 4.113 9 H 0.103 0.897 10 C 0.523 3.477 11 O -0.537 6.537 12 N -0.711 5.711 13 C 0.119 3.881 14 H 0.102 0.898 15 C -0.180 4.180 16 C 0.069 3.931 17 H 0.093 0.907 18 N -0.657 5.657 19 C 0.050 3.950 20 C 0.440 3.560 21 O -0.583 6.583 22 N -0.564 5.564 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.269 1.269 31 C -0.132 4.132 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.400 0.600 44 H 0.093 0.907 45 H 0.068 0.932 46 H 0.352 0.648 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.072 0.928 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.529 -11.524 14.141 28.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.089 4.089 4 H 0.104 0.896 5 C -0.159 4.159 6 C -0.161 4.161 7 C -0.153 4.153 8 C -0.135 4.135 9 H 0.121 0.879 10 C 0.310 3.690 11 O -0.413 6.413 12 N -0.362 5.362 13 C 0.013 3.987 14 H 0.120 0.880 15 C -0.221 4.221 16 C -0.043 4.043 17 H 0.111 0.889 18 N -0.288 5.288 19 C -0.082 4.082 20 C 0.225 3.775 21 O -0.468 6.468 22 N -0.200 5.200 23 C -0.429 4.429 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 C -0.171 4.171 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.235 0.765 44 H 0.111 0.889 45 H 0.087 0.913 46 H 0.173 0.827 47 H 0.061 0.939 48 H 0.103 0.897 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.091 0.909 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.366 -12.358 13.152 28.739 hybrid contribution 0.376 1.513 0.170 1.569 sum -21.991 -10.844 13.321 27.904 Atomic orbital electron populations 1.21753 0.95783 1.01440 1.01796 1.21539 0.96043 0.95770 1.01954 1.21926 0.91966 0.96775 0.98258 0.89594 1.22244 0.98141 0.98515 0.96970 1.22111 0.95527 1.00177 0.98306 1.22346 0.99576 0.95180 0.98189 1.22464 0.97921 0.99849 0.93235 0.87909 1.20540 0.81964 0.75476 0.91063 1.90697 1.55623 1.48232 1.46719 1.45748 1.07835 1.73744 1.08907 1.21753 0.95858 0.97746 0.83363 0.88035 1.24228 0.98313 0.97957 1.01572 1.23140 0.88074 0.95909 0.97144 0.88911 1.60021 1.27991 1.35147 1.05621 1.21710 0.95986 0.91456 0.99092 1.19840 0.85799 0.83526 0.88314 1.90524 1.72450 1.53525 1.30269 1.41865 1.29191 1.24259 1.24722 1.19715 1.07652 1.09819 1.05754 0.87911 1.25263 0.99235 0.96162 0.97281 1.69611 1.40805 1.17772 1.26155 0.85851 0.80042 0.78791 0.79567 1.20429 1.20923 1.19394 1.23451 0.92813 0.97128 1.03705 0.92651 0.92954 0.92805 0.91481 0.92295 0.91522 0.91624 0.91522 0.91509 0.91041 0.90871 0.76519 0.88888 0.91321 0.82684 0.93878 0.89697 0.77485 0.91884 0.90924 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.76 37.16 0.36 -0.63 16 2 C -0.12 -0.84 5.32 -26.73 -0.14 -0.99 16 3 C -0.07 -0.53 1.94 -88.76 -0.17 -0.70 16 4 H 0.09 0.83 7.55 -51.93 -0.39 0.44 16 5 C -0.12 -0.71 5.50 -25.62 -0.14 -0.85 16 6 C -0.12 -0.67 6.80 -25.62 -0.17 -0.85 16 7 C -0.12 -0.69 6.20 -25.07 -0.16 -0.85 16 8 C -0.11 -0.80 2.73 -89.57 -0.24 -1.04 16 9 H 0.10 0.59 8.07 -51.93 -0.42 0.17 16 10 C 0.52 5.16 7.15 -10.99 -0.08 5.08 16 11 O -0.54 -7.34 15.19 5.56 0.08 -7.26 16 12 N -0.71 -6.00 5.21 -53.02 -0.28 -6.28 16 13 C 0.12 1.17 4.29 -67.12 -0.29 0.88 16 14 H 0.10 1.15 7.50 -51.93 -0.39 0.76 16 15 C -0.18 -1.92 7.51 -25.78 -0.19 -2.12 16 16 C 0.07 0.78 4.07 -66.76 -0.27 0.51 16 17 H 0.09 0.96 7.87 -51.93 -0.41 0.55 16 18 N -0.66 -10.23 6.24 -106.98 -0.67 -10.90 16 19 C 0.05 0.87 6.01 -4.98 -0.03 0.84 16 20 C 0.44 10.35 7.82 -10.98 -0.09 10.26 16 21 O -0.58 -15.86 15.78 5.55 0.09 -15.77 16 22 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 23 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 24 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 27 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 31 C -0.13 -1.32 7.62 -25.92 -0.20 -1.51 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.31 7.48 -51.93 -0.39 -0.08 16 35 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 36 H 0.06 0.37 8.05 -51.93 -0.42 -0.05 16 37 H 0.07 0.35 7.77 -51.93 -0.40 -0.06 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.52 8.04 -51.93 -0.42 0.10 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.40 2.50 8.70 -40.82 -0.36 2.14 16 44 H 0.09 1.02 7.83 -51.93 -0.41 0.62 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.35 5.75 7.91 -39.29 -0.31 5.44 16 47 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.08 1.34 8.13 -51.93 -0.42 0.92 16 49 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 50 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 52 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 417.14 15.07 6.29 6.29 Total: -1.00 -32.67 417.14 -10.10 -42.76 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -9.20 Total: 13.19 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.05 Total: 0.01 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.28 Total: -55.24 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.17 Total: -23.03 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.67 -10.10 -42.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566803283.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.911 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds