Wall clock time and date at job start Tue Mar 31 2020 20:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09001 * 109.47133 * 303.74984 * 3 2 1 5 5 C 1.50704 * 109.47130 * 183.75323 * 3 2 1 6 6 O 1.21280 * 119.99860 * 254.65621 * 5 3 2 7 7 N 1.34777 * 119.99799 * 74.65480 * 5 3 2 8 8 C 1.46924 * 120.63286 * 5.97280 * 7 5 3 9 9 C 1.53194 * 108.77511 * 126.36934 * 8 7 5 10 10 C 1.53040 * 109.30806 * 54.63934 * 9 8 7 11 11 C 1.53044 * 109.53836 * 298.62800 * 10 9 8 12 12 C 1.46926 * 120.62936 * 185.95674 * 7 5 3 13 13 H 1.08994 * 109.58860 * 113.84137 * 12 7 5 14 14 C 1.53001 * 109.58562 * 353.55406 * 12 7 5 15 15 N 1.46496 * 109.46948 * 67.25694 * 14 12 7 16 16 C 1.36934 * 120.00265 * 179.49107 * 15 14 12 17 17 H 1.07998 * 120.00100 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00146 * 179.97438 * 16 15 14 19 19 N 1.31613 * 120.00173 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99869 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47295 * 89.99744 * 20 18 16 22 22 H 1.48503 * 109.46926 * 209.99955 * 20 18 16 23 23 H 1.48504 * 109.46830 * 329.99644 * 20 18 16 24 24 N 1.46501 * 109.47424 * 63.75687 * 3 2 1 25 25 C 1.46761 * 124.34853 * 239.72909 * 24 3 2 26 26 C 1.54653 * 105.38554 * 162.84999 * 25 24 3 27 27 C 1.54628 * 101.68347 * 25.76141 * 26 25 24 28 28 C 1.34420 * 124.35087 * 60.01832 * 24 3 2 29 29 O 1.21276 * 124.94017 * 0.43784 * 28 24 3 30 30 H 1.08993 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46763 * 300.00613 * 1 2 3 32 32 H 1.09001 * 109.46983 * 59.99800 * 1 2 3 33 33 H 1.09000 * 109.47469 * 239.99363 * 2 1 3 34 34 H 1.08998 * 109.46757 * 119.99723 * 2 1 3 35 35 H 1.08995 * 109.59207 * 246.15946 * 8 7 5 36 36 H 1.09001 * 109.58339 * 6.44336 * 8 7 5 37 37 H 1.08995 * 109.49723 * 174.58768 * 9 8 7 38 38 H 1.09003 * 109.49898 * 294.68616 * 9 8 7 39 39 H 1.08999 * 109.46534 * 58.65985 * 10 9 8 40 40 H 1.09004 * 109.45439 * 178.62954 * 10 9 8 41 41 H 1.08998 * 109.49857 * 301.42276 * 11 10 9 42 42 H 1.09003 * 109.49466 * 181.31712 * 11 10 9 43 43 H 1.09005 * 109.47052 * 187.25051 * 14 12 7 44 44 H 1.09000 * 109.47618 * 307.25381 * 14 12 7 45 45 H 0.97001 * 120.00283 * 359.49413 * 15 14 12 46 46 H 0.96998 * 119.99921 * 180.02562 * 19 18 16 47 47 H 1.09004 * 110.24263 * 281.98194 * 25 24 3 48 48 H 1.09002 * 110.24578 * 43.97640 * 25 24 3 49 49 H 1.08999 * 111.19431 * 267.59053 * 26 25 24 50 50 H 1.08999 * 110.85636 * 143.78569 * 26 25 24 51 51 H 1.09001 * 110.49086 * 216.30749 * 27 26 25 52 52 H 1.09011 * 110.59663 * 93.72453 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6229 1.9753 -0.8545 5 6 3.5442 1.4434 -0.0930 6 8 4.2121 1.6996 0.8863 7 7 4.1471 1.1596 -1.2645 8 6 3.3555 0.9758 -2.4886 9 6 3.9019 1.9088 -3.5739 10 6 5.4009 1.6560 -3.7508 11 6 6.1296 1.9610 -2.4400 12 6 5.6085 1.0285 -1.3419 13 1 5.8707 -0.0017 -1.5825 14 6 6.2300 1.4158 0.0014 15 7 5.8539 0.4284 1.0162 16 6 6.3053 0.5622 2.3021 17 1 6.9389 1.3954 2.5681 18 6 5.9485 -0.3732 3.2638 19 7 5.1760 -1.3883 2.9398 20 14 6.5637 -0.1902 5.0181 21 1 5.5941 0.6173 5.8010 22 1 6.7026 -1.5332 5.6364 23 1 7.8835 0.4906 5.0113 24 7 1.6271 2.1065 1.2388 25 6 0.7856 3.3077 1.2937 26 6 0.2626 3.3762 2.7475 27 6 1.3648 2.6084 3.5133 28 6 1.9747 1.6972 2.4711 29 8 2.6758 0.7374 2.7122 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.4341 -0.0588 -2.8227 36 1 2.3116 1.2168 -2.2882 37 1 3.3866 1.7139 -4.5143 38 1 3.7401 2.9453 -3.2778 39 1 5.5637 0.6131 -4.0228 40 1 5.7873 2.3016 -4.5396 41 1 5.9468 2.9970 -2.1547 42 1 7.1999 1.8032 -2.5736 43 1 7.3155 1.4426 -0.0947 44 1 5.8673 2.3995 0.2996 45 1 5.2852 -0.3202 0.7773 46 1 4.9264 -2.0416 3.6119 47 1 1.3767 4.1933 1.0604 48 1 -0.0485 3.2160 0.5979 49 1 -0.7006 2.8751 2.8438 50 1 0.1982 4.4095 3.0884 51 1 0.9296 2.0235 4.3237 52 1 2.1137 3.2987 3.9018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566954278.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:28 Heat of formation + Delta-G solvation = -29.001803 kcal Electronic energy + Delta-G solvation = -33323.346317 eV Core-core repulsion = 29324.156586 eV Total energy + Delta-G solvation = -3999.189731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.84447 -40.62816 -37.97008 -37.16126 -36.49972 -35.44091 -33.52026 -33.47912 -31.80044 -31.41166 -28.40598 -28.15314 -27.26670 -25.63522 -24.23230 -23.35224 -22.86705 -22.53235 -21.66075 -20.57929 -19.39539 -18.84276 -17.94855 -17.50410 -16.90682 -16.62338 -16.52711 -16.16317 -15.71570 -15.41163 -15.28915 -15.12145 -15.04372 -14.81105 -14.54003 -14.34831 -14.06533 -13.98430 -13.70974 -13.60738 -13.51631 -13.27137 -13.23507 -13.06405 -12.84880 -12.69606 -12.63698 -12.32550 -12.15907 -12.06575 -11.99528 -11.93402 -11.77225 -11.70984 -11.65652 -11.40609 -11.27842 -10.75079 -10.28119 -9.92016 -9.32496 -9.18287 -8.43400 -7.70855 -4.86411 1.35258 1.41677 1.46549 1.91010 2.11159 2.18914 2.53315 2.65406 3.57965 3.64524 3.70817 3.74680 3.87786 3.93048 4.02519 4.05123 4.09684 4.11632 4.20258 4.31642 4.38087 4.43541 4.45773 4.54338 4.58603 4.67822 4.72622 4.76187 4.80206 4.83217 4.90391 4.90692 5.03207 5.07158 5.08010 5.10788 5.16820 5.18540 5.25940 5.26635 5.29933 5.35426 5.41162 5.54544 5.57810 5.85629 5.97397 6.45332 6.47422 6.82263 7.54405 7.66072 7.83373 8.33904 8.56888 9.51997 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008443 B = 0.006912 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3315.565844 B = 4049.812125 C = 6303.383673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.126 4.126 3 C 0.158 3.842 4 H 0.138 0.862 5 C 0.445 3.555 6 O -0.472 6.472 7 N -0.617 5.617 8 C 0.103 3.897 9 C -0.125 4.125 10 C -0.112 4.112 11 C -0.117 4.117 12 C 0.150 3.850 13 H 0.051 0.949 14 C 0.169 3.831 15 N -0.691 5.691 16 C -0.210 4.210 17 H 0.045 0.955 18 C -0.059 4.059 19 N -0.943 5.943 20 Si 0.949 3.051 21 H -0.305 1.305 22 H -0.295 1.295 23 H -0.275 1.275 24 N -0.612 5.612 25 C 0.103 3.897 26 C -0.109 4.109 27 C -0.158 4.158 28 C 0.483 3.517 29 O -0.520 6.520 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.026 0.974 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.000 1.000 44 H 0.015 0.985 45 H 0.365 0.635 46 H 0.234 0.766 47 H 0.067 0.933 48 H 0.110 0.890 49 H 0.097 0.903 50 H 0.112 0.888 51 H 0.089 0.911 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.388 12.103 -17.409 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.165 4.165 3 C 0.051 3.949 4 H 0.155 0.845 5 C 0.230 3.770 6 O -0.341 6.341 7 N -0.356 5.356 8 C -0.019 4.019 9 C -0.163 4.163 10 C -0.150 4.150 11 C -0.155 4.155 12 C 0.046 3.954 13 H 0.069 0.931 14 C 0.042 3.958 15 N -0.332 5.332 16 C -0.343 4.343 17 H 0.063 0.937 18 C -0.252 4.252 19 N -0.594 5.594 20 Si 0.781 3.219 21 H -0.234 1.234 22 H -0.222 1.222 23 H -0.200 1.200 24 N -0.348 5.348 25 C -0.018 4.018 26 C -0.146 4.146 27 C -0.198 4.198 28 C 0.269 3.731 29 O -0.393 6.393 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.018 0.982 44 H 0.033 0.967 45 H 0.196 0.804 46 H 0.043 0.957 47 H 0.085 0.915 48 H 0.128 0.872 49 H 0.116 0.884 50 H 0.130 0.870 51 H 0.108 0.892 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.507 11.791 -16.608 25.006 hybrid contribution 0.761 -0.641 1.721 1.988 sum -13.747 11.150 -14.886 23.128 Atomic orbital electron populations 1.21617 0.92344 1.02067 1.02712 1.21703 0.98453 0.94479 1.01821 1.20821 0.90831 0.95214 0.88018 0.84470 1.21512 0.91514 0.80859 0.83163 1.91149 1.63866 1.42552 1.36535 1.47967 1.05902 1.73023 1.08714 1.21982 0.95773 1.00220 0.83953 1.21893 0.95930 0.99474 0.99007 1.21488 0.95434 1.02322 0.95739 1.21826 1.00421 0.98552 0.94749 1.21235 0.80576 0.98557 0.95017 0.93053 1.20818 0.93841 0.93320 0.87822 1.42140 1.58490 1.27026 1.05516 1.19060 1.21940 1.04977 0.88284 0.93687 1.25068 1.01544 0.98496 1.00050 1.69784 1.41968 1.15321 1.32323 0.85481 0.77376 0.75956 0.83062 1.23393 1.22181 1.20007 1.48041 1.52509 1.29871 1.04427 1.22329 0.94301 0.86056 0.99134 1.22584 0.97148 1.02352 0.92558 1.22322 1.00328 0.99189 0.97984 1.21549 0.80123 0.85638 0.85751 1.91049 1.35522 1.29454 1.83315 0.92743 0.93415 0.89342 0.90242 0.95497 0.91555 0.88249 0.87893 0.91723 0.91627 0.89801 0.92293 0.90729 0.98205 0.96744 0.80390 0.95684 0.91472 0.87191 0.88405 0.86985 0.89228 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.79 71.98 0.70 -2.11 16 2 C -0.13 -3.90 5.12 30.59 0.16 -3.74 16 3 C 0.16 4.70 1.83 44.25 0.08 4.78 16 4 H 0.14 2.70 6.52 -2.39 -0.02 2.68 16 5 C 0.45 17.49 6.19 87.66 0.54 18.03 16 6 O -0.47 -24.46 7.76 16.72 0.13 -24.33 16 7 N -0.62 -19.83 2.97 -795.03 -2.36 -22.19 16 8 C 0.10 2.05 5.36 86.36 0.46 2.51 16 9 C -0.13 -1.84 6.08 30.67 0.19 -1.66 16 10 C -0.11 -1.95 5.88 30.62 0.18 -1.77 16 11 C -0.12 -2.97 5.38 30.67 0.16 -2.81 16 12 C 0.15 5.34 2.93 44.98 0.13 5.48 16 13 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 14 C 0.17 8.08 4.87 86.38 0.42 8.50 16 15 N -0.69 -40.86 3.18 -343.45 -1.09 -41.95 16 16 C -0.21 -13.81 9.43 84.03 0.79 -13.02 16 17 H 0.05 2.98 7.83 -2.91 -0.02 2.96 16 18 C -0.06 -3.92 5.50 84.86 0.47 -3.45 16 19 N -0.94 -65.91 13.06 21.65 0.28 -65.63 16 20 Si 0.95 54.55 29.55 68.60 2.03 56.57 16 21 H -0.31 -17.83 7.11 99.48 0.71 -17.12 16 22 H -0.29 -16.65 7.11 99.48 0.71 -15.95 16 23 H -0.27 -14.91 7.11 99.48 0.71 -14.20 16 24 N -0.61 -18.92 2.12 -797.86 -1.69 -20.62 16 25 C 0.10 1.93 7.31 86.89 0.64 2.56 16 26 C -0.11 -1.87 7.19 31.71 0.23 -1.64 16 27 C -0.16 -4.78 6.86 30.59 0.21 -4.58 16 28 C 0.48 20.08 6.71 87.90 0.59 20.67 16 29 O -0.52 -29.79 14.86 16.73 0.25 -29.54 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.10 7.71 -2.38 -0.02 1.08 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 2.23 7.00 -2.39 -0.02 2.21 16 34 H 0.03 1.20 6.69 -2.39 -0.02 1.19 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 1.52 5.31 -2.39 -0.01 1.50 16 37 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 44 H 0.01 0.77 6.47 -2.39 -0.02 0.76 16 45 H 0.36 23.28 7.10 -92.71 -0.66 22.63 16 46 H 0.23 16.23 8.31 -92.71 -0.77 15.46 16 47 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 48 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 52 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 Total: -1.00 -97.04 392.61 3.74 -93.30 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.24 Total: 26.61 kcal Atomic # 6 Polarization: 21.81 SS G_CDS: 5.95 Total: 27.76 kcal Atomic # 7 Polarization: -145.52 SS G_CDS: -4.87 Total: -150.39 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: 0.38 Total: -53.87 kcal Atomic # 14 Polarization: 54.55 SS G_CDS: 2.03 Total: 56.57 kcal Total: -97.04 3.74 -93.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566954278.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.302 kcal (2) G-P(sol) polarization free energy of solvation -97.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds