Wall clock time and date at job start Tue Mar 31 2020 20:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47022 * 2 1 4 4 H 1.09001 * 109.46735 * 305.85771 * 3 2 1 5 5 C 1.50696 * 109.47178 * 185.85414 * 3 2 1 6 6 O 1.21280 * 120.00053 * 252.04209 * 5 3 2 7 7 N 1.34776 * 120.00091 * 72.04956 * 5 3 2 8 8 C 1.46929 * 120.63001 * 3.20197 * 7 5 3 9 9 C 1.52762 * 109.01078 * 233.58568 * 8 7 5 10 10 C 1.53045 * 109.38316 * 305.59153 * 9 8 7 11 11 C 1.53035 * 109.53681 * 61.23775 * 10 9 8 12 12 C 1.46920 * 120.63445 * 183.48659 * 7 5 3 13 13 H 1.09000 * 109.59119 * 246.15716 * 12 7 5 14 14 C 1.53008 * 109.58244 * 6.57854 * 12 7 5 15 15 N 1.46497 * 109.47262 * 286.83336 * 14 12 7 16 16 C 1.36932 * 120.00115 * 185.56798 * 15 14 12 17 17 H 1.07994 * 120.00111 * 0.02562 * 16 15 14 18 18 C 1.38819 * 120.00103 * 180.02562 * 16 15 14 19 19 N 1.31616 * 120.00188 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99668 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47022 * 90.00415 * 20 18 16 22 22 H 1.48506 * 109.46794 * 209.99911 * 20 18 16 23 23 H 1.48495 * 109.47292 * 329.99879 * 20 18 16 24 24 N 1.46501 * 109.47049 * 65.84920 * 3 2 1 25 25 C 1.46760 * 124.35302 * 239.99846 * 24 3 2 26 26 C 1.54475 * 105.47552 * 162.96454 * 25 24 3 27 27 C 1.54629 * 101.76225 * 25.41887 * 26 25 24 28 28 C 1.34419 * 124.34495 * 59.98473 * 24 3 2 29 29 O 1.21276 * 124.94536 * 0.45543 * 28 24 3 30 30 H 1.08999 * 109.47410 * 60.00339 * 1 2 3 31 31 H 1.09005 * 109.46941 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47571 * 299.99962 * 1 2 3 33 33 H 1.08996 * 109.47571 * 240.00038 * 2 1 3 34 34 H 1.08999 * 109.47410 * 119.99661 * 2 1 3 35 35 H 1.08998 * 109.58417 * 353.42225 * 8 7 5 36 36 H 1.09000 * 109.58434 * 113.84817 * 8 7 5 37 37 H 1.09000 * 109.56703 * 185.55318 * 9 8 7 38 38 H 1.09004 * 109.38301 * 65.51282 * 9 8 7 39 39 H 1.08995 * 109.45743 * 301.21402 * 10 9 8 40 40 H 1.09000 * 109.44416 * 181.25418 * 10 9 8 41 41 H 1.08999 * 109.49515 * 178.68451 * 11 10 9 42 42 H 1.08999 * 109.52412 * 58.60219 * 11 10 9 43 43 H 1.08996 * 109.47198 * 46.84055 * 14 12 7 44 44 H 1.09008 * 109.47048 * 166.83506 * 14 12 7 45 45 H 0.97005 * 119.99850 * 5.57431 * 15 14 12 46 46 H 0.97000 * 120.00272 * 180.02562 * 19 18 16 47 47 H 1.09006 * 110.24456 * 43.96507 * 25 24 3 48 48 H 1.08997 * 110.24689 * 281.97044 * 25 24 3 49 49 H 1.09005 * 110.97295 * 143.53437 * 26 25 24 50 50 H 1.08999 * 110.97563 * 267.30568 * 26 25 24 51 51 H 1.09007 * 110.48553 * 93.88294 * 27 26 25 52 52 H 1.09000 * 110.48898 * 216.52302 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5935 1.9857 -0.8329 5 6 3.5399 1.4451 -0.1449 6 8 4.2401 1.7357 0.8017 7 7 4.1034 1.1244 -1.3265 8 6 3.2681 0.8384 -2.5010 9 6 3.6640 -0.5213 -3.0739 10 6 5.1687 -0.5360 -3.3535 11 6 5.9342 -0.3193 -2.0463 12 6 5.5642 1.0482 -1.4632 13 1 5.9104 1.8363 -2.1318 14 6 6.2171 1.2136 -0.0893 15 7 6.1154 2.6123 0.3344 16 6 6.7318 3.0256 1.4852 17 1 7.2933 2.3206 2.0802 18 6 6.6350 4.3508 1.8870 19 7 7.2279 4.7482 2.9929 20 14 5.6643 5.5703 0.8575 21 1 4.2510 5.5882 1.3131 22 1 6.2513 6.9257 1.0117 23 1 5.7191 5.1667 -0.5705 24 7 1.6699 2.0913 1.2603 25 6 0.8264 3.2882 1.3592 26 6 0.3583 3.3421 2.8304 27 6 1.4856 2.5647 3.5485 28 6 2.0593 1.6666 2.4748 29 8 2.7678 0.7039 2.6799 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.2188 0.8179 -2.2069 36 1 3.4232 1.6091 -3.2560 37 1 3.1199 -0.6990 -4.0015 38 1 3.4202 -1.3022 -2.3537 39 1 5.4154 0.2606 -4.0553 40 1 5.4485 -1.4979 -3.7831 41 1 7.0059 -0.3532 -2.2424 42 1 5.6696 -1.1017 -1.3351 43 1 5.7080 0.5768 0.6340 44 1 7.2673 0.9276 -0.1493 45 1 5.6113 3.2456 -0.2001 46 1 7.1599 5.6741 3.2739 47 1 -0.0321 3.2006 0.6932 48 1 1.4051 4.1788 1.1146 49 1 0.3066 4.3713 3.1858 50 1 -0.6012 2.8399 2.9532 51 1 2.2470 3.2516 3.9183 52 1 1.0780 1.9698 4.3658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566954279.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:32 Heat of formation + Delta-G solvation = -10.068277 kcal Electronic energy + Delta-G solvation = -33175.920573 eV Core-core repulsion = 29177.551861 eV Total energy + Delta-G solvation = -3998.368711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.82644 -39.58651 -36.92273 -36.05669 -35.34500 -34.03398 -32.53328 -31.87868 -30.96030 -30.17221 -27.48355 -27.23299 -26.04242 -24.36668 -22.57420 -22.19017 -21.84348 -21.54645 -20.55797 -19.51308 -18.22467 -17.50931 -16.80919 -16.60580 -15.92093 -15.51883 -15.17987 -14.79163 -14.60922 -14.35124 -14.05878 -14.02006 -13.75528 -13.71698 -13.36601 -13.20115 -12.99631 -12.84221 -12.60966 -12.53417 -12.41005 -12.25711 -12.19911 -11.80781 -11.76076 -11.47099 -11.24401 -11.16211 -11.10873 -11.02001 -10.84093 -10.79597 -10.72269 -10.60418 -10.22121 -9.94519 -9.33302 -9.24344 -8.83510 -8.64824 -8.16558 -8.02458 -6.73954 -5.48747 -2.74248 2.88334 3.17805 3.20308 3.47056 3.50331 3.51949 3.56309 4.49780 4.55658 4.65044 4.73346 4.80510 4.82266 4.85592 4.90347 4.93285 4.94969 5.08475 5.18896 5.22708 5.32822 5.37538 5.40492 5.46019 5.56006 5.56950 5.69491 5.73544 5.75099 5.77178 5.79013 5.82889 5.87699 5.92954 5.96202 5.99883 6.04558 6.09699 6.10532 6.18787 6.22342 6.41051 6.61872 6.71715 6.93563 7.27784 7.43737 7.86251 8.27775 8.63331 8.69608 8.90630 9.51262 10.24576 10.46505 11.71772 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008179 B = 0.007437 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.413514 B = 3763.940487 C = 6160.153800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.147 3.853 4 H 0.096 0.904 5 C 0.457 3.543 6 O -0.417 6.417 7 N -0.617 5.617 8 C 0.107 3.893 9 C -0.135 4.135 10 C -0.117 4.117 11 C -0.127 4.127 12 C 0.140 3.860 13 H 0.066 0.934 14 C 0.167 3.833 15 N -0.722 5.722 16 C -0.199 4.199 17 H 0.085 0.915 18 C -0.007 4.007 19 N -0.946 5.946 20 Si 0.886 3.114 21 H -0.291 1.291 22 H -0.297 1.297 23 H -0.285 1.285 24 N -0.609 5.609 25 C 0.105 3.895 26 C -0.128 4.128 27 C -0.156 4.156 28 C 0.530 3.470 29 O -0.505 6.505 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.023 0.977 45 H 0.354 0.646 46 H 0.253 0.747 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.087 0.913 50 H 0.078 0.922 51 H 0.107 0.893 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.417 -8.886 -12.799 24.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.040 3.960 4 H 0.114 0.886 5 C 0.239 3.761 6 O -0.282 6.282 7 N -0.357 5.357 8 C -0.017 4.017 9 C -0.173 4.173 10 C -0.154 4.154 11 C -0.166 4.166 12 C 0.037 3.963 13 H 0.084 0.916 14 C 0.039 3.961 15 N -0.366 5.366 16 C -0.330 4.330 17 H 0.102 0.898 18 C -0.200 4.200 19 N -0.598 5.598 20 Si 0.719 3.281 21 H -0.219 1.219 22 H -0.224 1.224 23 H -0.212 1.212 24 N -0.345 5.345 25 C -0.018 4.018 26 C -0.166 4.166 27 C -0.197 4.197 28 C 0.318 3.682 29 O -0.378 6.378 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.041 0.959 45 H 0.187 0.813 46 H 0.063 0.937 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.106 0.894 50 H 0.097 0.903 51 H 0.125 0.875 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.475 -9.269 -11.941 23.106 hybrid contribution -0.798 1.188 -0.921 1.702 sum -18.273 -8.080 -12.862 23.762 Atomic orbital electron populations 1.21706 0.95086 1.01643 1.01691 1.21911 0.96414 0.94832 1.04256 1.20811 0.93723 0.94890 0.86570 0.88588 1.20838 0.90188 0.80807 0.84230 1.91264 1.60004 1.39887 1.37085 1.47969 1.06198 1.72051 1.09465 1.21607 0.95034 0.96624 0.88442 1.21855 0.96949 0.97594 1.00895 1.21484 0.94726 1.01647 0.97566 1.21899 1.00309 0.97543 0.96832 1.21513 0.79252 0.96196 0.99334 0.91598 1.20817 0.95666 0.88833 0.90737 1.42512 1.62133 1.04575 1.27372 1.19025 1.22028 0.93913 0.98026 0.89764 1.24520 1.01266 0.96775 0.97487 1.69703 1.49873 1.16009 1.24189 0.86488 0.80258 0.81471 0.79932 1.21853 1.22433 1.21235 1.47870 1.52095 1.29197 1.05343 1.22040 0.93947 0.88099 0.97724 1.22537 0.98247 1.01842 0.94001 1.22332 0.99469 0.99748 0.98112 1.20572 0.79202 0.84617 0.83850 1.90707 1.35201 1.28198 1.83665 0.92946 0.92556 0.92558 0.90457 0.89687 0.90169 0.91972 0.91158 0.91499 0.91936 0.91936 0.90790 0.91416 0.93558 0.95938 0.81325 0.93713 0.90797 0.91363 0.89400 0.90294 0.87480 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.81 37.16 0.36 -0.96 16 2 C -0.14 -1.64 4.94 -26.73 -0.13 -1.78 16 3 C 0.15 2.09 1.80 -69.08 -0.12 1.96 16 4 H 0.10 1.09 7.06 -51.93 -0.37 0.72 16 5 C 0.46 8.35 6.45 -10.99 -0.07 8.28 16 6 O -0.42 -9.97 8.08 -14.51 -0.12 -10.09 16 7 N -0.62 -9.44 2.98 -165.48 -0.49 -9.93 16 8 C 0.11 1.11 5.49 -3.93 -0.02 1.09 16 9 C -0.13 -1.20 5.97 -26.83 -0.16 -1.36 16 10 C -0.12 -1.14 5.89 -26.69 -0.16 -1.30 16 11 C -0.13 -1.63 5.34 -26.61 -0.14 -1.77 16 12 C 0.14 2.33 2.91 -67.60 -0.20 2.14 16 13 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 14 C 0.17 3.69 4.89 -4.04 -0.02 3.67 16 15 N -0.72 -19.11 3.02 -59.91 -0.18 -19.29 16 16 C -0.20 -6.23 10.24 -15.06 -0.15 -6.38 16 17 H 0.08 2.86 8.06 -52.49 -0.42 2.44 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.95 -32.04 13.97 55.49 0.78 -31.26 16 20 Si 0.89 24.27 27.73 -169.99 -4.71 19.55 16 21 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 22 H -0.30 -8.16 7.11 56.52 0.40 -7.76 16 23 H -0.29 -7.46 6.52 56.52 0.37 -7.09 16 24 N -0.61 -9.32 2.20 -166.16 -0.37 -9.69 16 25 C 0.11 1.23 7.30 -3.13 -0.02 1.21 16 26 C -0.13 -1.31 7.18 -25.10 -0.18 -1.49 16 27 C -0.16 -2.24 6.86 -26.74 -0.18 -2.43 16 28 C 0.53 9.73 6.69 -10.86 -0.07 9.65 16 29 O -0.50 -11.47 14.93 -14.51 -0.22 -11.69 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.56 7.78 -51.93 -0.40 0.16 16 33 H 0.08 0.82 5.75 -51.93 -0.30 0.52 16 34 H 0.08 1.34 6.63 -51.93 -0.34 0.99 16 35 H 0.08 0.70 4.67 -51.93 -0.24 0.46 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.63 7.66 -51.93 -0.40 0.24 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 1.16 6.31 -51.93 -0.33 0.83 16 44 H 0.02 0.51 8.09 -51.92 -0.42 0.09 16 45 H 0.35 9.36 5.10 -40.82 -0.21 9.15 16 46 H 0.25 8.15 8.31 -40.82 -0.34 7.82 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 52 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -39.93 388.42 -9.77 -49.70 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -8.94 Total: 6.65 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -1.37 Total: 10.20 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -0.26 Total: -70.17 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.33 Total: -21.78 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -4.71 Total: 19.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.93 -9.77 -49.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566954279.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.632 kcal (2) G-P(sol) polarization free energy of solvation -39.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds