Wall clock time and date at job start Tue Mar 31 2020 19:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47035 * 2 1 4 4 H 1.09002 * 115.55067 * 29.41783 * 3 2 1 5 5 C 1.52999 * 117.51737 * 243.71817 * 3 2 1 6 6 C 1.53005 * 117.49765 * 175.08796 * 3 2 1 7 7 H 1.08992 * 117.49816 * 0.02562 * 6 3 2 8 8 C 1.50698 * 117.49376 * 215.02474 * 6 3 2 9 9 O 1.21281 * 120.00647 * 359.97438 * 8 6 3 10 10 N 1.34783 * 119.99794 * 180.02562 * 8 6 3 11 11 C 1.47029 * 125.64599 * 0.02562 * 10 8 6 12 12 C 1.54320 * 107.26794 * 181.02405 * 11 10 8 13 13 C 1.55154 * 102.94467 * 22.19712 * 12 11 10 14 14 H 1.09000 * 111.00537 * 82.56637 * 13 12 11 15 15 C 1.52998 * 111.00604 * 206.38242 * 13 12 11 16 16 N 1.46901 * 109.47158 * 293.54498 * 15 13 12 17 17 C 1.46900 * 110.99952 * 293.95380 * 16 15 13 18 18 C 1.46896 * 111.00047 * 169.99945 * 16 15 13 19 19 C 1.50705 * 109.47222 * 190.00328 * 18 16 15 20 20 O 1.21290 * 119.99630 * 359.97438 * 19 18 16 21 21 N 1.34775 * 120.00076 * 180.02562 * 19 18 16 22 22 C 1.37093 * 119.99803 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00456 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99742 * 179.97438 * 22 21 19 25 25 N 1.31409 * 120.00463 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99942 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46920 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.46916 * 119.99979 * 26 24 22 29 29 H 1.48498 * 109.47043 * 240.00258 * 26 24 22 30 30 C 1.47420 * 125.65046 * 179.71546 * 10 8 6 31 31 H 1.08997 * 109.46740 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46974 * 300.00065 * 1 2 3 33 33 H 1.08998 * 109.47193 * 60.00119 * 1 2 3 34 34 H 1.08998 * 109.47460 * 240.00099 * 2 1 3 35 35 H 1.09001 * 109.47585 * 119.99541 * 2 1 3 36 36 H 1.09003 * 117.50034 * 0.02562 * 5 3 2 37 37 H 1.08995 * 117.49797 * 145.02727 * 5 3 2 38 38 H 1.08994 * 109.88409 * 300.44615 * 11 10 8 39 39 H 1.09005 * 109.87713 * 61.61231 * 11 10 8 40 40 H 1.09006 * 110.71565 * 140.55811 * 12 11 10 41 41 H 1.08993 * 110.72534 * 263.83059 * 12 11 10 42 42 H 1.08994 * 109.46934 * 53.54205 * 15 13 12 43 43 H 1.09002 * 109.47232 * 173.54780 * 15 13 12 44 44 H 1.08998 * 109.47149 * 60.00157 * 17 16 15 45 45 H 1.09007 * 109.47120 * 179.97438 * 17 16 15 46 46 H 1.08999 * 109.47232 * 300.00173 * 17 16 15 47 47 H 1.08997 * 109.47062 * 310.00130 * 18 16 15 48 48 H 1.08999 * 109.47223 * 69.99847 * 18 16 15 49 49 H 0.97000 * 119.99725 * 359.97438 * 21 19 18 50 50 H 0.96991 * 120.00495 * 179.97438 * 25 24 22 51 51 H 1.08993 * 110.36827 * 274.74495 * 30 10 8 52 52 H 1.09003 * 110.36629 * 37.06909 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3891 2.1713 0.4830 5 6 2.8421 1.9087 -1.2166 6 6 3.5503 1.6579 0.1162 7 1 4.1806 0.7719 0.1922 8 6 4.0240 2.8610 0.8902 9 8 3.2178 3.6153 1.3921 10 7 5.3439 3.0995 1.0238 11 6 6.4247 2.2720 0.4681 12 6 7.7605 2.9153 0.8961 13 6 7.3612 3.7491 2.1421 14 1 7.3282 3.1254 3.0355 15 6 8.3112 4.9324 2.3377 16 7 9.6510 4.4339 2.6761 17 6 9.6494 3.7668 3.9850 18 6 10.6411 5.5184 2.6391 19 6 12.0273 4.9370 2.7468 20 8 12.1757 3.7372 2.8452 21 7 13.1019 5.7502 2.7348 22 6 14.3629 5.2213 2.8332 23 1 14.4952 4.1530 2.9208 24 6 15.4709 6.0598 2.8203 25 7 15.3101 7.3597 2.7143 26 14 17.1891 5.3392 2.9552 27 1 17.0987 3.8609 3.0637 28 1 17.9731 5.6994 1.7466 29 1 17.8611 5.8844 4.1620 30 6 5.9427 4.2367 1.7458 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.0062 1.1879 -2.0176 37 1 2.7188 2.9442 -1.5340 38 1 6.3572 1.2589 0.8646 39 1 6.3545 2.2521 -0.6195 40 1 8.4895 2.1497 1.1619 41 1 8.1477 3.5610 0.1080 42 1 8.3617 5.5137 1.4172 43 1 7.9435 5.5637 3.1466 44 1 8.9584 2.9242 3.9625 45 1 10.6534 3.4070 4.2106 46 1 9.3354 4.4739 4.7527 47 1 10.5477 6.0636 1.7000 48 1 10.4664 6.1984 3.4729 49 1 12.9831 6.7098 2.6565 50 1 16.0834 7.9450 2.7056 51 1 6.0069 5.1083 1.0944 52 1 5.3596 4.4700 2.6367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567738233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:29 Heat of formation + Delta-G solvation = -47.384542 kcal Electronic energy + Delta-G solvation = -28733.550888 eV Core-core repulsion = 24733.564022 eV Total energy + Delta-G solvation = -3999.986866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.53829 -38.97011 -38.23632 -37.05069 -36.05848 -33.88119 -32.59661 -31.96801 -31.23568 -29.65258 -27.95176 -26.97985 -25.20648 -24.42166 -24.04160 -22.73310 -22.15876 -20.84480 -20.13504 -19.17543 -19.12706 -17.84341 -17.57911 -16.69306 -15.93701 -15.75536 -15.41191 -15.25681 -14.89417 -14.83940 -14.64919 -14.30529 -13.94848 -13.69289 -13.61637 -13.39469 -13.32581 -13.05117 -12.72751 -12.61018 -12.52073 -12.47429 -12.12602 -11.74363 -11.72226 -11.56813 -11.43354 -11.37093 -11.27048 -11.12972 -11.00326 -10.89396 -10.68274 -10.57187 -10.41593 -10.34976 -10.23051 -10.01883 -9.49151 -8.86685 -8.45306 -7.98239 -7.85549 -6.42316 -3.83064 2.23838 2.67040 3.15601 3.26276 3.33179 3.45558 3.87819 3.91338 4.07822 4.21933 4.36128 4.39560 4.45913 4.55074 4.72286 4.79141 4.81938 4.92637 5.00266 5.04301 5.07096 5.16196 5.24066 5.26134 5.29029 5.37042 5.41156 5.50127 5.50744 5.56659 5.58660 5.67404 5.68219 5.73166 5.74071 5.75717 5.83094 5.94749 5.97318 6.00240 6.02155 6.12838 6.21413 6.28083 6.55406 7.25600 7.27788 7.37909 7.54831 7.93936 8.06249 8.61469 9.17875 9.54347 10.06089 10.75525 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034948 B = 0.001611 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.998629 B =17371.295032 C =17618.935873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.118 4.118 4 H 0.117 0.883 5 C -0.147 4.147 6 C -0.188 4.188 7 H 0.123 0.877 8 C 0.558 3.442 9 O -0.545 6.545 10 N -0.614 5.614 11 C 0.098 3.902 12 C -0.113 4.113 13 C -0.095 4.095 14 H 0.087 0.913 15 C 0.064 3.936 16 N -0.515 5.515 17 C 0.020 3.980 18 C 0.046 3.954 19 C 0.445 3.555 20 O -0.578 6.578 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 C 0.111 3.889 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.013 0.987 47 H 0.087 0.913 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.070 0.930 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.529 -9.276 -6.286 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.137 4.137 4 H 0.135 0.865 5 C -0.185 4.185 6 C -0.209 4.209 7 H 0.141 0.859 8 C 0.347 3.653 9 O -0.423 6.423 10 N -0.348 5.348 11 C -0.025 4.025 12 C -0.151 4.151 13 C -0.114 4.114 14 H 0.105 0.895 15 C -0.064 4.064 16 N -0.239 5.239 17 C -0.128 4.128 18 C -0.086 4.086 19 C 0.230 3.770 20 O -0.462 6.462 21 N -0.202 5.202 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 C -0.012 4.012 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.032 0.968 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.088 0.912 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.647 -9.901 -6.318 27.303 hybrid contribution 0.816 1.012 0.610 1.436 sum -23.831 -8.889 -5.708 26.068 Atomic orbital electron populations 1.21739 0.95112 1.01690 1.02171 1.21159 0.96334 0.93545 1.02209 1.22498 0.91336 0.98789 1.01038 0.86452 1.23101 1.01895 1.03172 0.90308 1.22268 0.97601 0.98823 1.02166 0.85940 1.19321 0.80504 0.85576 0.79908 1.90693 1.53168 1.49171 1.49227 1.48410 1.04967 1.27423 1.53960 1.22187 0.86945 0.94798 0.98564 1.22566 0.94943 1.00185 0.97406 1.22393 0.92488 0.97436 0.99126 0.89519 1.22040 0.88764 0.94915 1.00704 1.61543 1.03500 1.27733 1.31088 1.22576 1.04729 0.97703 0.87753 1.21863 0.92422 0.92612 1.01665 1.19733 0.85345 0.87551 0.84367 1.90479 1.85976 1.14832 1.54885 1.41878 1.05213 1.09017 1.64064 1.19743 0.81448 0.94606 1.46967 0.87864 1.25253 1.00175 0.95131 0.97383 1.69614 1.31657 1.02547 1.50522 0.85813 0.81608 0.79281 0.77719 1.19226 1.20770 1.20803 1.22287 0.93231 0.88950 0.96705 0.92571 0.92485 0.92503 0.91598 0.91383 0.87720 0.88326 0.91449 0.91283 0.89028 0.90195 0.90538 0.94755 0.92162 0.88605 0.96813 0.89444 0.93509 0.77518 0.91942 0.91202 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.87 37.16 0.37 -0.44 16 2 C -0.10 -0.56 6.22 -26.73 -0.17 -0.73 16 3 C -0.12 -0.92 5.25 -90.61 -0.48 -1.40 16 4 H 0.12 1.12 7.60 -51.93 -0.39 0.73 16 5 C -0.15 -1.04 9.88 -26.73 -0.26 -1.30 16 6 C -0.19 -1.59 5.26 -91.77 -0.48 -2.07 16 7 H 0.12 0.84 7.67 -51.93 -0.40 0.45 16 8 C 0.56 6.56 7.63 -10.98 -0.08 6.47 16 9 O -0.54 -8.33 16.51 5.56 0.09 -8.24 16 10 N -0.61 -6.46 3.33 -170.38 -0.57 -7.03 16 11 C 0.10 0.83 6.31 -3.06 -0.02 0.81 16 12 C -0.11 -1.11 6.25 -24.90 -0.16 -1.26 16 13 C -0.09 -0.98 2.91 -88.35 -0.26 -1.24 16 14 H 0.09 0.94 6.54 -51.93 -0.34 0.60 16 15 C 0.06 0.76 4.41 -3.82 -0.02 0.74 16 16 N -0.51 -7.96 4.32 -244.37 -1.06 -9.02 16 17 C 0.02 0.31 8.98 60.06 0.54 0.85 16 18 C 0.05 0.78 5.45 -4.98 -0.03 0.76 16 19 C 0.44 10.19 7.48 -10.98 -0.08 10.10 16 20 O -0.58 -15.05 13.91 5.55 0.08 -14.97 16 21 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 22 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 26 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 27 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 C 0.11 1.16 6.38 -2.41 -0.02 1.15 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.33 7.88 -51.93 -0.41 -0.08 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.54 8.03 -51.93 -0.42 0.12 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.50 7.98 -51.93 -0.41 0.09 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 42 H 0.08 0.84 7.90 -51.93 -0.41 0.43 16 43 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 44 H 0.06 0.81 6.45 -51.93 -0.33 0.48 16 45 H 0.10 1.83 5.82 -51.92 -0.30 1.53 16 46 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.09 1.35 7.93 -51.93 -0.41 0.94 16 48 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 49 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 50 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 51 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 52 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 LS Contribution 417.34 15.07 6.29 6.29 Total: -1.00 -32.24 417.34 -10.04 -42.29 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -9.14 Total: 7.99 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -1.38 Total: 4.59 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.96 Total: -53.75 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.17 Total: -23.21 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.24 -10.04 -42.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567738233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.098 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds