Wall clock time and date at job start Tue Mar 31 2020 19:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47035 * 2 1 4 4 H 1.09002 * 115.55067 * 29.41783 * 3 2 1 5 5 C 1.52999 * 117.51737 * 243.71817 * 3 2 1 6 6 C 1.53005 * 117.49765 * 175.08796 * 3 2 1 7 7 H 1.08992 * 117.49816 * 0.02562 * 6 3 2 8 8 C 1.50698 * 117.49376 * 215.02474 * 6 3 2 9 9 O 1.21281 * 120.00647 * 359.97438 * 8 6 3 10 10 N 1.34783 * 119.99794 * 180.02562 * 8 6 3 11 11 C 1.47029 * 125.64599 * 0.02562 * 10 8 6 12 12 C 1.54320 * 107.26794 * 181.02405 * 11 10 8 13 13 C 1.55154 * 102.94467 * 22.19712 * 12 11 10 14 14 H 1.09000 * 111.00537 * 82.56637 * 13 12 11 15 15 C 1.52998 * 111.00604 * 206.38242 * 13 12 11 16 16 N 1.46901 * 109.47158 * 293.54498 * 15 13 12 17 17 C 1.46900 * 110.99952 * 293.95380 * 16 15 13 18 18 C 1.46896 * 111.00047 * 169.99945 * 16 15 13 19 19 C 1.50705 * 109.47222 * 190.00328 * 18 16 15 20 20 O 1.21290 * 119.99630 * 359.97438 * 19 18 16 21 21 N 1.34775 * 120.00076 * 180.02562 * 19 18 16 22 22 C 1.37093 * 119.99803 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00456 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99742 * 179.97438 * 22 21 19 25 25 N 1.31409 * 120.00463 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99942 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46920 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.46916 * 119.99979 * 26 24 22 29 29 H 1.48498 * 109.47043 * 240.00258 * 26 24 22 30 30 C 1.47420 * 125.65046 * 179.71546 * 10 8 6 31 31 H 1.08997 * 109.46740 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46974 * 300.00065 * 1 2 3 33 33 H 1.08998 * 109.47193 * 60.00119 * 1 2 3 34 34 H 1.08998 * 109.47460 * 240.00099 * 2 1 3 35 35 H 1.09001 * 109.47585 * 119.99541 * 2 1 3 36 36 H 1.09003 * 117.50034 * 0.02562 * 5 3 2 37 37 H 1.08995 * 117.49797 * 145.02727 * 5 3 2 38 38 H 1.08994 * 109.88409 * 300.44615 * 11 10 8 39 39 H 1.09005 * 109.87713 * 61.61231 * 11 10 8 40 40 H 1.09006 * 110.71565 * 140.55811 * 12 11 10 41 41 H 1.08993 * 110.72534 * 263.83059 * 12 11 10 42 42 H 1.08994 * 109.46934 * 53.54205 * 15 13 12 43 43 H 1.09002 * 109.47232 * 173.54780 * 15 13 12 44 44 H 1.08998 * 109.47149 * 60.00157 * 17 16 15 45 45 H 1.09007 * 109.47120 * 179.97438 * 17 16 15 46 46 H 1.08999 * 109.47232 * 300.00173 * 17 16 15 47 47 H 1.08997 * 109.47062 * 310.00130 * 18 16 15 48 48 H 1.08999 * 109.47223 * 69.99847 * 18 16 15 49 49 H 0.97000 * 119.99725 * 359.97438 * 21 19 18 50 50 H 0.96991 * 120.00495 * 179.97438 * 25 24 22 51 51 H 1.08993 * 110.36827 * 274.74495 * 30 10 8 52 52 H 1.09003 * 110.36629 * 37.06909 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3891 2.1713 0.4830 5 6 2.8421 1.9087 -1.2166 6 6 3.5503 1.6579 0.1162 7 1 4.1806 0.7719 0.1922 8 6 4.0240 2.8610 0.8902 9 8 3.2178 3.6153 1.3921 10 7 5.3439 3.0995 1.0238 11 6 6.4247 2.2720 0.4681 12 6 7.7605 2.9153 0.8961 13 6 7.3612 3.7491 2.1421 14 1 7.3282 3.1254 3.0355 15 6 8.3112 4.9324 2.3377 16 7 9.6510 4.4339 2.6761 17 6 9.6494 3.7668 3.9850 18 6 10.6411 5.5184 2.6391 19 6 12.0273 4.9370 2.7468 20 8 12.1757 3.7372 2.8452 21 7 13.1019 5.7502 2.7348 22 6 14.3629 5.2213 2.8332 23 1 14.4952 4.1530 2.9208 24 6 15.4709 6.0598 2.8203 25 7 15.3101 7.3597 2.7143 26 14 17.1891 5.3392 2.9552 27 1 17.0987 3.8609 3.0637 28 1 17.9731 5.6994 1.7466 29 1 17.8611 5.8844 4.1620 30 6 5.9427 4.2367 1.7458 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.0062 1.1879 -2.0176 37 1 2.7188 2.9442 -1.5340 38 1 6.3572 1.2589 0.8646 39 1 6.3545 2.2521 -0.6195 40 1 8.4895 2.1497 1.1619 41 1 8.1477 3.5610 0.1080 42 1 8.3617 5.5137 1.4172 43 1 7.9435 5.5637 3.1466 44 1 8.9584 2.9242 3.9625 45 1 10.6534 3.4070 4.2106 46 1 9.3354 4.4739 4.7527 47 1 10.5477 6.0636 1.7000 48 1 10.4664 6.1984 3.4729 49 1 12.9831 6.7098 2.6565 50 1 16.0834 7.9450 2.7056 51 1 6.0069 5.1083 1.0944 52 1 5.3596 4.4700 2.6367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567738233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:28 Heat of formation + Delta-G solvation = -67.984812 kcal Electronic energy + Delta-G solvation = -28734.444183 eV Core-core repulsion = 24733.564022 eV Total energy + Delta-G solvation = -4000.880161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.37354 -40.38054 -39.36897 -37.93222 -37.26143 -35.82801 -33.36827 -33.20584 -32.68641 -30.47818 -29.39428 -27.99594 -26.76221 -25.50471 -24.65693 -23.46337 -23.31990 -21.40269 -21.04831 -20.91818 -19.94771 -19.81505 -18.36351 -17.94107 -17.19607 -16.67479 -16.56433 -16.46713 -16.41650 -15.88455 -15.47197 -15.37532 -15.21336 -15.12451 -14.80101 -14.52325 -14.18249 -13.86318 -13.72626 -13.58233 -13.43335 -13.32855 -13.31259 -13.04606 -12.99170 -12.72988 -12.58882 -12.37825 -12.34581 -12.21420 -12.10366 -12.03308 -11.93809 -11.81903 -11.48539 -11.42614 -11.26564 -11.06049 -10.81417 -10.23289 -9.96647 -9.70613 -9.16278 -8.44150 -5.92284 1.37905 1.40645 1.43148 1.56960 1.87964 2.09616 2.30123 2.75523 2.83828 3.23232 3.34542 3.47196 3.66042 3.73012 3.78527 3.82031 3.89590 4.13496 4.24525 4.26750 4.30695 4.34371 4.41233 4.44860 4.48106 4.50580 4.55491 4.57138 4.62435 4.71318 4.76112 4.76806 4.79443 4.90762 4.91925 4.94401 5.03503 5.15283 5.18212 5.21826 5.22950 5.29052 5.32012 5.41023 5.44108 5.49069 5.91050 6.09808 6.23247 6.46112 6.64097 7.07234 7.16499 7.60657 8.16520 8.73532 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034948 B = 0.001611 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.998629 B =17371.295032 C =17618.935873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.123 4.123 4 H 0.092 0.908 5 C -0.133 4.133 6 C -0.193 4.193 7 H 0.144 0.856 8 C 0.549 3.451 9 O -0.591 6.591 10 N -0.615 5.615 11 C 0.101 3.899 12 C -0.110 4.110 13 C -0.086 4.086 14 H 0.083 0.917 15 C 0.068 3.932 16 N -0.528 5.528 17 C 0.026 3.974 18 C 0.057 3.943 19 C 0.443 3.557 20 O -0.612 6.612 21 N -0.577 5.577 22 C -0.329 4.329 23 H 0.079 0.921 24 C -0.013 4.013 25 N -0.922 5.922 26 Si 0.991 3.009 27 H -0.273 1.273 28 H -0.272 1.272 29 H -0.273 1.273 30 C 0.113 3.887 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.132 0.868 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.044 0.956 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.025 0.975 47 H 0.111 0.889 48 H 0.064 0.936 49 H 0.395 0.605 50 H 0.276 0.724 51 H 0.075 0.925 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.022 -9.967 -7.471 27.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C -0.142 4.142 4 H 0.111 0.889 5 C -0.171 4.171 6 C -0.213 4.213 7 H 0.162 0.838 8 C 0.340 3.660 9 O -0.472 6.472 10 N -0.347 5.347 11 C -0.020 4.020 12 C -0.148 4.148 13 C -0.106 4.106 14 H 0.101 0.899 15 C -0.060 4.060 16 N -0.252 5.252 17 C -0.122 4.122 18 C -0.074 4.074 19 C 0.230 3.770 20 O -0.498 6.498 21 N -0.214 5.214 22 C -0.459 4.459 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.563 5.563 26 Si 0.815 3.185 27 H -0.197 1.197 28 H -0.197 1.197 29 H -0.198 1.198 30 C -0.010 4.010 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.150 0.850 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.062 0.938 44 H 0.097 0.903 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.129 0.871 48 H 0.082 0.918 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.093 0.907 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -25.140 -10.587 -7.512 28.293 hybrid contribution 0.906 1.226 0.993 1.819 sum -24.233 -9.361 -6.519 26.784 Atomic orbital electron populations 1.21746 0.94979 1.02259 1.01795 1.21157 0.96433 0.92183 1.02975 1.22495 0.90675 0.99490 1.01506 0.88945 1.23190 1.00283 1.03310 0.90277 1.22316 0.98175 0.98068 1.02778 0.83848 1.19928 0.80412 0.86036 0.79601 1.90667 1.54320 1.50958 1.51263 1.48518 1.05181 1.27517 1.53479 1.22270 0.85314 0.94886 0.99577 1.22514 0.95439 0.99853 0.97006 1.22268 0.92054 0.96971 0.99301 0.89910 1.22088 0.86782 0.95604 1.01541 1.61494 1.05023 1.27590 1.31064 1.22440 1.02730 0.98698 0.88320 1.21739 0.89134 0.93000 1.03526 1.20773 0.87082 0.87057 0.82038 1.90461 1.86986 1.16587 1.55755 1.41950 1.05139 1.09320 1.65017 1.19688 0.83298 0.93869 1.49056 0.90264 1.26000 1.03312 0.95462 0.96508 1.69674 1.32869 1.03276 1.50516 0.84895 0.77214 0.78181 0.78202 1.19737 1.19718 1.19806 1.22233 0.92940 0.89371 0.96497 0.91482 0.93466 0.92358 0.89920 0.91428 0.85026 0.89387 0.90004 0.89558 0.89965 0.90296 0.89310 0.93768 0.90286 0.92627 0.95663 0.87147 0.91801 0.77119 0.91425 0.90689 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.87 71.98 0.71 -0.74 16 2 C -0.09 -0.90 6.22 30.60 0.19 -0.71 16 3 C -0.12 -1.80 5.25 -10.79 -0.06 -1.86 16 4 H 0.09 1.84 7.60 -2.39 -0.02 1.82 16 5 C -0.13 -1.62 9.88 30.60 0.30 -1.31 16 6 C -0.19 -2.94 5.26 -11.54 -0.06 -3.00 16 7 H 0.14 1.56 7.67 -2.39 -0.02 1.54 16 8 C 0.55 12.56 7.63 87.66 0.67 13.23 16 9 O -0.59 -18.44 16.51 -3.03 -0.05 -18.49 16 10 N -0.61 -12.08 3.33 -811.34 -2.70 -14.78 16 11 C 0.10 1.47 6.31 86.73 0.55 2.02 16 12 C -0.11 -1.95 6.25 31.78 0.20 -1.75 16 13 C -0.09 -1.64 2.91 -9.32 -0.03 -1.67 16 14 H 0.08 1.67 6.54 -2.39 -0.02 1.65 16 15 C 0.07 1.44 4.41 86.30 0.38 1.82 16 16 N -0.53 -15.57 4.32 -927.05 -4.01 -19.58 16 17 C 0.03 0.79 8.98 127.69 1.15 1.94 16 18 C 0.06 1.88 5.45 85.56 0.47 2.35 16 19 C 0.44 20.47 7.48 87.66 0.66 21.12 16 20 O -0.61 -32.66 13.91 -3.06 -0.04 -32.70 16 21 N -0.58 -29.09 5.29 -306.98 -1.62 -30.71 16 22 C -0.33 -18.48 9.68 84.04 0.81 -17.67 16 23 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 24 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 25 N -0.92 -49.46 13.05 21.66 0.28 -49.17 16 26 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 29 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 30 C 0.11 2.22 6.38 86.94 0.55 2.78 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.08 0.57 7.88 -2.39 -0.02 0.55 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.13 0.89 8.03 -2.39 -0.02 0.87 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 0.99 7.98 -2.39 -0.02 0.97 16 39 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.08 1.43 8.01 -2.39 -0.02 1.41 16 42 H 0.09 1.70 7.90 -2.39 -0.02 1.68 16 43 H 0.04 0.88 8.12 -2.39 -0.02 0.86 16 44 H 0.08 2.05 6.45 -2.39 -0.02 2.03 16 45 H 0.05 2.16 5.82 -2.38 -0.01 2.15 16 46 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.11 3.16 7.93 -2.39 -0.02 3.14 16 48 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 49 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 50 H 0.28 13.87 8.31 -92.72 -0.77 13.10 16 51 H 0.07 1.41 8.04 -2.39 -0.02 1.39 16 52 H 0.07 1.45 8.04 -2.39 -0.02 1.43 16 Total: -1.00 -71.47 417.34 1.02 -70.45 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: 0.17 Total: 34.03 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 6.96 Total: 16.29 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -8.05 Total: -114.24 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -0.09 Total: -51.19 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -71.47 1.02 -70.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567738233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.465 kcal (2) G-P(sol) polarization free energy of solvation -71.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds