Wall clock time and date at job start Tue Mar 31 2020 19:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46891 * 2 1 4 4 H 1.09003 * 115.54977 * 29.33547 * 3 2 1 5 5 C 1.53072 * 117.49433 * 243.59997 * 3 2 1 6 6 C 1.52997 * 59.98691 * 252.51814 * 5 3 2 7 7 H 1.09005 * 117.49780 * 107.49841 * 6 5 3 8 8 C 1.50698 * 117.50248 * 252.50138 * 6 5 3 9 9 O 1.21281 * 119.99991 * 68.74313 * 8 6 5 10 10 N 1.34778 * 119.99895 * 248.47405 * 8 6 5 11 11 C 1.47016 * 125.64904 * 0.29611 * 10 8 6 12 12 C 1.54327 * 107.27260 * 178.90889 * 11 10 8 13 13 C 1.55160 * 102.93711 * 337.80234 * 12 11 10 14 14 H 1.08994 * 111.00229 * 277.42834 * 13 12 11 15 15 C 1.53006 * 111.00063 * 153.61851 * 13 12 11 16 16 N 1.46897 * 109.46986 * 64.27373 * 15 13 12 17 17 C 1.46903 * 110.99869 * 199.63127 * 16 15 13 18 18 C 1.46906 * 110.99731 * 75.68596 * 16 15 13 19 19 C 1.50698 * 109.47079 * 189.99780 * 18 16 15 20 20 O 1.21289 * 120.00197 * 359.97438 * 19 18 16 21 21 N 1.34782 * 119.99702 * 180.02562 * 19 18 16 22 22 C 1.37102 * 119.99529 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00028 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99431 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00366 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99611 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47281 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47582 * 119.99986 * 26 24 22 29 29 H 1.48500 * 109.47206 * 239.99928 * 26 24 22 30 30 C 1.47427 * 125.64646 * 179.97438 * 10 8 6 31 31 H 1.09003 * 109.47721 * 59.99437 * 1 2 3 32 32 H 1.09000 * 109.47495 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47281 * 300.00042 * 1 2 3 34 34 H 1.09000 * 109.46964 * 240.00618 * 2 1 3 35 35 H 1.08992 * 109.47517 * 120.00111 * 2 1 3 36 36 H 1.09005 * 117.51326 * 145.03991 * 5 3 2 37 37 H 1.09004 * 117.49637 * 0.02562 * 5 3 2 38 38 H 1.09010 * 109.88190 * 298.32280 * 11 10 8 39 39 H 1.08999 * 109.88550 * 59.32914 * 11 10 8 40 40 H 1.08994 * 110.72244 * 96.17079 * 12 11 10 41 41 H 1.09007 * 110.71571 * 219.26676 * 12 11 10 42 42 H 1.08994 * 109.46852 * 184.28373 * 15 13 12 43 43 H 1.09007 * 109.46513 * 304.27980 * 15 13 12 44 44 H 1.08997 * 109.46852 * 65.06155 * 17 16 15 45 45 H 1.09002 * 109.47019 * 185.05542 * 17 16 15 46 46 H 1.08998 * 109.46989 * 305.05834 * 17 16 15 47 47 H 1.08999 * 109.47194 * 309.99542 * 18 16 15 48 48 H 1.09003 * 109.47261 * 69.99495 * 18 16 15 49 49 H 0.96994 * 119.99932 * 0.02562 * 21 19 18 50 50 H 0.96998 * 120.00126 * 180.02562 * 25 24 22 51 51 H 1.09003 * 110.36679 * 322.99485 * 30 10 8 52 52 H 1.08999 * 110.36743 * 85.32625 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1715 0.4818 5 6 2.8447 1.9076 -1.2162 6 6 3.5501 1.6579 0.1182 7 1 4.1803 0.7719 0.1964 8 6 4.0228 2.8620 0.8915 9 8 3.2158 3.6158 1.3929 10 7 5.3425 3.0981 1.0304 11 6 6.4240 2.2703 0.4768 12 6 7.7587 2.9404 0.8655 13 6 7.3441 4.4115 1.1324 14 1 7.2849 4.9757 0.2016 15 6 8.3048 5.0821 2.1165 16 7 9.6435 5.1613 1.5169 17 6 10.6717 5.3538 2.5483 18 6 9.7057 6.2259 0.5065 19 6 11.0017 6.1205 -0.2552 20 8 11.7957 5.2450 0.0171 21 7 11.2789 6.9998 -1.2384 22 6 12.4582 6.9041 -1.9310 23 1 13.1648 6.1241 -1.6891 24 6 12.7438 7.8103 -2.9450 25 7 11.8838 8.7592 -3.2396 26 14 14.3503 7.6796 -3.8891 27 1 15.1391 6.5346 -3.3678 28 1 14.0617 7.4672 -5.3303 29 1 15.1275 8.9336 -3.7196 30 6 5.9404 4.2330 1.7570 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.7225 2.9428 -1.5350 37 1 3.0102 1.1858 -2.0161 38 1 6.3761 1.2667 0.8995 39 1 6.3340 2.2199 -0.6083 40 1 8.1702 2.4861 1.7668 41 1 8.4734 2.8811 0.0446 42 1 7.9487 6.0867 2.3444 43 1 8.3519 4.4962 3.0345 44 1 10.7106 4.4744 3.1911 45 1 11.6414 5.4988 2.0721 46 1 10.4261 6.2310 3.1469 47 1 8.8689 6.1208 -0.1840 48 1 9.6512 7.1972 0.9983 49 1 10.6444 7.7006 -1.4554 50 1 12.0830 9.3915 -3.9477 51 1 5.3431 5.1332 1.6122 52 1 6.0270 4.0006 2.8184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567738237.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:31 Heat of formation + Delta-G solvation = -68.504112 kcal Electronic energy + Delta-G solvation = -29041.792176 eV Core-core repulsion = 25040.889496 eV Total energy + Delta-G solvation = -4000.902679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.37575 -40.40429 -39.33480 -37.91996 -37.26923 -35.83237 -33.33917 -33.24528 -32.69019 -30.46939 -29.53464 -27.99530 -26.63579 -25.46387 -24.64097 -23.47989 -23.24832 -21.49221 -21.33081 -20.74147 -20.00604 -19.76626 -18.29154 -18.02102 -17.21236 -16.75435 -16.63567 -16.56018 -16.07943 -15.76972 -15.51313 -15.34086 -15.22473 -15.09656 -14.85500 -14.55952 -14.20925 -13.81104 -13.72490 -13.61153 -13.44862 -13.32396 -13.28371 -13.04825 -12.99609 -12.76105 -12.63162 -12.44538 -12.35803 -12.21616 -12.10582 -11.97967 -11.93712 -11.82573 -11.49956 -11.40780 -11.27161 -11.06227 -10.81210 -10.23146 -9.97611 -9.70295 -9.16311 -8.44922 -5.93187 1.37301 1.40482 1.42526 1.56486 1.88279 2.08378 2.29521 2.77736 2.83028 3.22253 3.34546 3.43699 3.68040 3.73612 3.78356 3.83426 3.86682 4.12477 4.23205 4.26749 4.30739 4.36129 4.38394 4.44458 4.48080 4.53641 4.55788 4.56112 4.65205 4.69939 4.76120 4.76661 4.81158 4.91239 4.94269 4.94690 5.01600 5.15324 5.19092 5.21827 5.22677 5.29764 5.32465 5.40334 5.43176 5.49314 5.90718 6.10023 6.24071 6.45961 6.62864 7.07082 7.15466 7.59487 8.15131 8.72792 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.001966 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.280109 B =14240.788395 C =15245.916105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.120 4.120 4 H 0.093 0.907 5 C -0.139 4.139 6 C -0.191 4.191 7 H 0.146 0.854 8 C 0.549 3.451 9 O -0.590 6.590 10 N -0.615 5.615 11 C 0.100 3.900 12 C -0.107 4.107 13 C -0.090 4.090 14 H 0.073 0.927 15 C 0.070 3.930 16 N -0.528 5.528 17 C 0.029 3.971 18 C 0.056 3.944 19 C 0.444 3.556 20 O -0.610 6.610 21 N -0.577 5.577 22 C -0.329 4.329 23 H 0.080 0.920 24 C -0.015 4.015 25 N -0.923 5.923 26 Si 0.992 3.008 27 H -0.272 1.272 28 H -0.272 1.272 29 H -0.273 1.273 30 C 0.114 3.886 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.130 0.870 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.053 0.947 46 H 0.030 0.970 47 H 0.104 0.896 48 H 0.063 0.937 49 H 0.394 0.606 50 H 0.276 0.724 51 H 0.064 0.936 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.712 -14.928 7.490 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C -0.139 4.139 4 H 0.111 0.889 5 C -0.176 4.176 6 C -0.212 4.212 7 H 0.163 0.837 8 C 0.340 3.660 9 O -0.471 6.471 10 N -0.347 5.347 11 C -0.022 4.022 12 C -0.145 4.145 13 C -0.110 4.110 14 H 0.092 0.908 15 C -0.058 4.058 16 N -0.252 5.252 17 C -0.119 4.119 18 C -0.075 4.075 19 C 0.231 3.769 20 O -0.496 6.496 21 N -0.215 5.215 22 C -0.458 4.458 23 H 0.098 0.902 24 C -0.214 4.214 25 N -0.564 5.564 26 Si 0.816 3.184 27 H -0.197 1.197 28 H -0.197 1.197 29 H -0.198 1.198 30 C -0.009 4.009 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.148 0.852 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.113 0.887 44 H 0.098 0.902 45 H 0.072 0.928 46 H 0.048 0.952 47 H 0.122 0.878 48 H 0.081 0.919 49 H 0.228 0.772 50 H 0.086 0.914 51 H 0.083 0.917 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.561 -15.441 7.565 25.302 hybrid contribution 0.505 1.683 -0.233 1.773 sum -18.056 -13.758 7.332 23.855 Atomic orbital electron populations 1.21749 0.94964 1.02293 1.01782 1.21158 0.96436 0.92065 1.03040 1.22510 0.90619 0.99574 1.01181 0.88877 1.23197 1.00777 1.03189 0.90449 1.22328 0.98245 0.98098 1.02525 0.83669 1.19922 0.80419 0.86096 0.79553 1.90664 1.54241 1.50836 1.51401 1.48520 1.05163 1.27641 1.53397 1.22270 0.85457 0.95043 0.99394 1.22467 0.95208 0.93693 1.03122 1.22206 0.92445 0.97412 0.98940 0.90817 1.22063 0.86821 1.00088 0.96817 1.61482 1.04547 1.45116 1.14097 1.22399 0.95644 1.00457 0.93412 1.21766 0.95583 0.94447 0.95697 1.20742 0.89849 0.83325 0.82941 1.90466 1.51933 1.37702 1.69519 1.41970 1.19081 1.28809 1.31642 1.19695 0.97075 1.14411 1.14661 0.90173 1.26023 1.02383 0.94976 0.98038 1.69680 1.37222 1.17318 1.32176 0.84883 0.77429 0.78242 0.77867 1.19663 1.19739 1.19799 1.22145 0.92951 0.89337 0.96499 0.92527 0.91391 0.93355 0.90035 0.91142 0.89695 0.85152 0.89254 0.90543 0.89737 0.90581 0.93454 0.88682 0.90155 0.92781 0.95166 0.87840 0.91945 0.77220 0.91433 0.91735 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.87 71.98 0.71 -0.84 16 2 C -0.09 -0.96 6.22 30.60 0.19 -0.77 16 3 C -0.12 -1.90 5.25 -10.77 -0.06 -1.96 16 4 H 0.09 1.95 7.60 -2.39 -0.02 1.93 16 5 C -0.14 -2.00 9.88 30.62 0.30 -1.70 16 6 C -0.19 -3.18 5.26 -11.54 -0.06 -3.24 16 7 H 0.15 1.71 7.73 -2.38 -0.02 1.69 16 8 C 0.55 13.26 7.63 87.66 0.67 13.93 16 9 O -0.59 -19.06 16.51 -3.03 -0.05 -19.11 16 10 N -0.62 -12.90 3.33 -812.25 -2.70 -15.60 16 11 C 0.10 1.61 6.28 86.73 0.55 2.16 16 12 C -0.11 -2.03 6.20 31.79 0.20 -1.83 16 13 C -0.09 -1.85 3.03 -9.48 -0.03 -1.88 16 14 H 0.07 1.71 6.87 -2.39 -0.02 1.69 16 15 C 0.07 1.47 4.45 86.31 0.38 1.86 16 16 N -0.53 -15.52 4.20 -927.02 -3.89 -19.42 16 17 C 0.03 0.85 9.16 127.69 1.17 2.02 16 18 C 0.06 1.88 5.28 85.56 0.45 2.34 16 19 C 0.44 20.57 7.42 87.66 0.65 21.23 16 20 O -0.61 -32.51 13.96 -3.06 -0.04 -32.55 16 21 N -0.58 -29.30 5.29 -306.98 -1.62 -30.92 16 22 C -0.33 -18.48 9.68 84.04 0.81 -17.66 16 23 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 24 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 25 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 26 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 29 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 30 C 0.11 2.34 6.37 86.77 0.55 2.89 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.08 0.64 7.88 -2.39 -0.02 0.63 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.13 1.21 8.03 -2.39 -0.02 1.20 16 38 H 0.09 1.08 8.05 -2.38 -0.02 1.06 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.49 8.04 -2.39 -0.02 1.48 16 41 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.05 0.94 8.00 -2.39 -0.02 0.92 16 43 H 0.09 1.68 7.94 -2.38 -0.02 1.67 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.05 2.07 5.79 -2.39 -0.01 2.05 16 46 H 0.03 0.78 8.13 -2.39 -0.02 0.76 16 47 H 0.10 3.13 6.67 -2.39 -0.02 3.12 16 48 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 49 H 0.39 19.19 7.90 -92.71 -0.73 18.46 16 50 H 0.28 13.96 8.31 -92.71 -0.77 13.18 16 51 H 0.06 1.50 8.04 -2.39 -0.02 1.48 16 52 H 0.08 1.46 8.03 -2.39 -0.02 1.45 16 Total: -1.00 -71.39 418.12 1.12 -70.27 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: 0.17 Total: 35.88 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 6.96 Total: 16.20 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -7.94 Total: -115.44 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -0.09 Total: -51.66 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -71.39 1.12 -70.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567738237.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.768 kcal (2) G-P(sol) polarization free energy of solvation -71.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds