Wall clock time and date at job start Tue Mar 31 2020 19:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47444 * 2 1 4 4 H 1.09000 * 115.56180 * 29.30783 * 3 2 1 5 5 C 1.53072 * 117.49495 * 243.60174 * 3 2 1 6 6 C 1.52997 * 117.50198 * 174.99873 * 3 2 1 7 7 H 1.08999 * 117.49665 * 359.97438 * 6 3 2 8 8 C 1.50696 * 117.50255 * 214.98016 * 6 3 2 9 9 O 1.21284 * 120.00109 * 0.08541 * 8 6 3 10 10 N 1.34777 * 120.00137 * 180.08326 * 8 6 3 11 11 C 1.46498 * 119.99828 * 0.28058 * 10 8 6 12 12 C 1.52999 * 109.47070 * 269.71859 * 11 10 8 13 13 C 1.46506 * 119.99873 * 179.97438 * 10 8 6 14 14 H 1.08993 * 110.28939 * 359.30123 * 13 10 8 15 15 C 1.54261 * 110.32145 * 237.17283 * 13 10 8 16 16 C 1.54380 * 105.05764 * 241.10293 * 15 13 10 17 17 N 1.48560 * 104.59659 * 23.86096 * 16 15 13 18 18 C 1.46901 * 110.99759 * 200.95896 * 17 16 15 19 19 C 1.50705 * 109.46981 * 290.11998 * 18 17 16 20 20 O 1.21295 * 119.99977 * 0.02562 * 19 18 17 21 21 N 1.34772 * 119.99726 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99688 * 179.97438 * 21 19 18 23 23 H 1.08006 * 120.00177 * 0.02562 * 22 21 19 24 24 C 1.38953 * 120.00131 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00226 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99631 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47356 * 89.99853 * 26 24 22 28 28 H 1.48503 * 109.46805 * 209.99356 * 26 24 22 29 29 H 1.48496 * 109.47061 * 329.98905 * 26 24 22 30 30 C 1.48825 * 104.23416 * 320.48647 * 17 16 15 31 31 H 1.09004 * 109.46807 * 59.99906 * 1 2 3 32 32 H 1.08999 * 109.46947 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46721 * 300.00167 * 1 2 3 34 34 H 1.09000 * 109.47137 * 239.99761 * 2 1 3 35 35 H 1.09004 * 109.46807 * 120.00094 * 2 1 3 36 36 H 1.09001 * 117.51595 * 145.03695 * 5 3 2 37 37 H 1.08999 * 117.51371 * 359.97438 * 5 3 2 38 38 H 1.08993 * 109.47575 * 29.72405 * 11 10 8 39 39 H 1.09001 * 109.46870 * 149.72361 * 11 10 8 40 40 H 1.09001 * 109.47317 * 59.99875 * 12 11 10 41 41 H 1.08994 * 109.47777 * 180.02562 * 12 11 10 42 42 H 1.09002 * 109.47116 * 300.00653 * 12 11 10 43 43 H 1.08993 * 110.33011 * 0.02562 * 15 13 10 44 44 H 1.09003 * 110.32002 * 122.21244 * 15 13 10 45 45 H 1.09005 * 110.40692 * 142.63403 * 16 15 13 46 46 H 1.08994 * 110.41507 * 264.95399 * 16 15 13 47 47 H 1.08998 * 109.47468 * 50.12367 * 18 17 16 48 48 H 1.08998 * 109.46821 * 170.12642 * 18 17 16 49 49 H 0.96995 * 120.00667 * 0.02562 * 21 19 18 50 50 H 0.96997 * 119.99883 * 180.02562 * 25 24 22 51 51 H 1.09001 * 110.45212 * 280.77856 * 30 17 16 52 52 H 1.08998 * 110.49708 * 158.24846 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1717 0.4813 5 6 2.8449 1.9074 -1.2162 6 6 3.5502 1.6578 0.1183 7 1 4.1803 0.7718 0.1966 8 6 4.0230 2.8618 0.8914 9 8 3.2160 3.6157 1.3928 10 7 5.3426 3.1009 1.0257 11 6 6.3172 2.1937 0.4149 12 6 6.6822 1.0915 1.4113 13 6 5.8021 4.2718 1.7769 14 1 4.9499 4.8429 2.1451 15 6 6.6988 5.1595 0.8894 16 6 8.0684 5.1848 1.6015 17 7 8.0883 3.9444 2.4188 18 6 9.0652 4.0494 3.5109 19 6 10.4602 4.0272 2.9410 20 8 10.6243 3.9337 1.7428 21 7 11.5252 4.1112 3.7626 22 6 12.7942 4.0905 3.2441 23 1 12.9404 4.0073 2.1773 24 6 13.8923 4.1777 4.0911 25 7 15.1086 4.1584 3.5942 26 14 13.6393 4.3225 5.9363 27 1 13.5961 2.9655 6.5380 28 1 14.7617 5.0920 6.5308 29 1 12.3594 5.0251 6.2068 30 6 6.7032 3.8351 2.9519 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.7228 2.9425 -1.5350 37 1 3.0112 1.1856 -2.0159 38 1 5.8857 1.7459 -0.4802 39 1 7.2141 2.7517 0.1458 40 1 5.7854 0.5335 1.6806 41 1 7.4077 0.4167 0.9572 42 1 7.1138 1.5393 2.3065 43 1 6.7967 4.7244 -0.1051 44 1 6.2877 6.1669 0.8237 45 1 8.8770 5.1715 0.8706 46 1 8.1487 6.0644 2.2400 47 1 8.9080 4.9832 4.0506 48 1 8.9384 3.2093 4.1938 49 1 11.3939 4.1857 4.7208 50 1 15.8751 4.2189 4.1855 51 1 6.5687 4.5032 3.8027 52 1 6.4840 2.8062 3.2370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567942511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:33 Heat of formation + Delta-G solvation = -33.704400 kcal Electronic energy + Delta-G solvation = -30073.077043 eV Core-core repulsion = 26073.683392 eV Total energy + Delta-G solvation = -3999.393650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.69965 -39.20237 -38.02433 -37.00398 -35.50073 -33.94199 -32.47460 -31.90117 -31.56981 -30.06772 -28.68283 -26.85859 -24.91219 -24.12024 -23.90384 -23.13955 -21.21007 -21.06851 -20.43009 -19.35340 -18.90947 -18.30882 -17.59110 -16.59981 -16.06473 -15.61533 -15.26841 -15.17610 -14.84503 -14.73052 -14.70242 -14.33990 -13.91858 -13.73226 -13.44853 -13.26518 -13.03411 -12.81733 -12.64099 -12.53490 -12.45824 -12.31820 -12.26426 -11.96401 -11.84127 -11.64241 -11.59190 -11.47673 -11.35562 -11.23206 -11.02059 -10.84289 -10.63971 -10.60759 -10.56740 -10.27977 -9.98990 -9.80885 -9.56457 -8.82940 -8.57654 -8.20172 -8.12739 -6.32228 -3.83515 2.33368 2.81317 3.01200 3.05607 3.13970 3.54478 3.72984 3.97415 4.09263 4.16244 4.44689 4.47523 4.58233 4.63601 4.77257 4.84592 4.90001 4.98788 5.01989 5.09871 5.14740 5.21900 5.29653 5.30502 5.34014 5.35028 5.44936 5.47383 5.58043 5.62505 5.65434 5.66011 5.67757 5.72238 5.74870 5.80168 5.82410 5.86745 5.91143 6.03179 6.05554 6.09531 6.33907 6.38353 6.54271 6.97890 7.05773 7.34903 7.57179 8.07700 8.13214 8.59173 8.94286 9.41581 9.82568 10.80903 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026065 B = 0.002140 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.981059 B =13079.838376 C =13237.479219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.119 4.119 4 H 0.116 0.884 5 C -0.149 4.149 6 C -0.189 4.189 7 H 0.125 0.875 8 C 0.545 3.455 9 O -0.550 6.550 10 N -0.593 5.593 11 C 0.108 3.892 12 C -0.171 4.171 13 C 0.139 3.861 14 H 0.104 0.896 15 C -0.134 4.134 16 C 0.036 3.964 17 N -0.479 5.479 18 C 0.031 3.969 19 C 0.455 3.545 20 O -0.559 6.559 21 N -0.592 5.592 22 C -0.303 4.303 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.882 5.882 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 C 0.014 3.986 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.040 0.960 47 H 0.051 0.949 48 H 0.089 0.911 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.051 0.949 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.415 -5.485 -4.329 26.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.138 4.138 4 H 0.134 0.866 5 C -0.186 4.186 6 C -0.210 4.210 7 H 0.143 0.857 8 C 0.334 3.666 9 O -0.428 6.428 10 N -0.325 5.325 11 C -0.015 4.015 12 C -0.229 4.229 13 C 0.035 3.965 14 H 0.122 0.878 15 C -0.173 4.173 16 C -0.092 4.092 17 N -0.204 5.204 18 C -0.101 4.101 19 C 0.241 3.759 20 O -0.441 6.441 21 N -0.232 5.232 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 C -0.115 4.115 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.121 0.879 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.107 0.893 49 H 0.202 0.798 50 H 0.084 0.916 51 H 0.069 0.931 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.297 -5.612 -5.158 26.420 hybrid contribution 0.138 0.791 2.192 2.335 sum -25.159 -4.821 -2.966 25.788 Atomic orbital electron populations 1.21738 0.95200 1.01619 1.02118 1.21153 0.96242 0.93660 1.02179 1.22483 0.91533 0.98644 1.01097 0.86551 1.23100 1.02088 1.03091 0.90320 1.22362 0.97425 0.99217 1.02023 0.85713 1.19701 0.81945 0.85369 0.79635 1.90659 1.53757 1.49030 1.49363 1.47921 1.05368 1.26211 1.52973 1.21573 0.93160 0.91450 0.95271 1.22297 1.00910 0.98338 1.01348 1.21788 0.97099 0.86254 0.91389 0.87786 1.22746 0.95010 0.99550 0.99961 1.23191 0.97696 0.90538 0.97779 1.65262 1.01700 1.35396 1.17995 1.22098 0.92936 1.01384 0.93697 1.19575 0.84994 0.83906 0.87475 1.90539 1.85660 1.53142 1.14714 1.42210 1.06482 1.66894 1.07611 1.19412 0.79510 1.47667 0.96625 0.86286 1.25033 0.94977 0.97719 0.98445 1.69618 0.97631 1.49374 1.35557 0.86682 0.78337 0.78893 0.85519 1.19623 1.20215 1.19587 1.23719 0.89559 1.02271 0.95943 0.92547 0.92631 0.92522 0.91633 0.91425 0.88392 0.87813 0.91027 0.88565 0.93609 0.91574 0.90550 0.90238 0.90834 0.87942 0.94168 0.93104 0.89270 0.79781 0.91637 0.93131 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.87 37.16 0.37 -0.52 16 2 C -0.09 -0.62 6.22 -26.73 -0.17 -0.79 16 3 C -0.12 -1.00 5.25 -90.59 -0.48 -1.47 16 4 H 0.12 1.17 7.60 -51.93 -0.39 0.78 16 5 C -0.15 -1.14 9.88 -26.70 -0.26 -1.41 16 6 C -0.19 -1.73 4.51 -91.78 -0.41 -2.14 16 7 H 0.13 0.98 6.50 -51.93 -0.34 0.65 16 8 C 0.54 6.61 7.46 -10.99 -0.08 6.53 16 9 O -0.55 -8.42 15.61 5.55 0.09 -8.33 16 10 N -0.59 -6.74 2.38 -164.54 -0.39 -7.13 16 11 C 0.11 1.12 5.02 -4.04 -0.02 1.10 16 12 C -0.17 -1.78 9.73 37.16 0.36 -1.42 16 13 C 0.14 1.65 3.46 -66.54 -0.23 1.42 16 14 H 0.10 1.32 6.96 -51.93 -0.36 0.96 16 15 C -0.13 -1.59 6.16 -25.35 -0.16 -1.74 16 16 C 0.04 0.52 5.80 -2.18 -0.01 0.51 16 17 N -0.48 -7.06 4.44 -231.17 -1.03 -8.09 16 18 C 0.03 0.50 5.30 -4.97 -0.03 0.47 16 19 C 0.46 9.95 7.59 -10.99 -0.08 9.87 16 20 O -0.56 -14.26 14.42 5.54 0.08 -14.18 16 21 N -0.59 -13.81 5.09 -10.96 -0.06 -13.87 16 22 C -0.30 -8.44 10.16 -14.93 -0.15 -8.59 16 23 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -25.54 13.96 55.50 0.77 -24.77 16 26 Si 0.88 19.22 27.74 -169.99 -4.71 14.51 16 27 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 28 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 29 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 30 C 0.01 0.17 5.20 -2.03 -0.01 0.16 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.37 7.88 -51.93 -0.41 -0.04 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.61 8.03 -51.93 -0.42 0.19 16 38 H 0.07 0.62 6.64 -51.93 -0.34 0.27 16 39 H 0.10 1.18 6.55 -51.93 -0.34 0.84 16 40 H 0.04 0.42 7.46 -51.93 -0.39 0.04 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.93 5.10 -51.93 -0.27 0.66 16 43 H 0.08 0.95 6.86 -51.93 -0.36 0.59 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.10 1.78 6.91 -51.93 -0.36 1.43 16 46 H 0.04 0.57 7.83 -51.93 -0.41 0.16 16 47 H 0.05 0.74 7.88 -51.93 -0.41 0.33 16 48 H 0.09 1.27 8.13 -51.93 -0.42 0.84 16 49 H 0.37 7.62 5.76 -40.82 -0.24 7.38 16 50 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 51 H 0.05 0.57 8.00 -51.93 -0.42 0.16 16 52 H 0.09 1.09 5.76 -51.93 -0.30 0.79 16 LS Contribution 404.01 15.07 6.09 6.09 Total: -1.00 -32.47 404.01 -9.29 -41.76 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -8.67 Total: 11.01 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.46 Total: 3.01 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.70 Total: -53.86 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.17 Total: -22.51 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.47 -9.29 -41.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567942511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.059 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds