Wall clock time and date at job start Tue Mar 31 2020 19:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47444 * 2 1 4 4 H 1.09000 * 115.56180 * 29.30783 * 3 2 1 5 5 C 1.53072 * 117.49495 * 243.60174 * 3 2 1 6 6 C 1.52997 * 117.50198 * 174.99873 * 3 2 1 7 7 H 1.08999 * 117.49665 * 359.97438 * 6 3 2 8 8 C 1.50696 * 117.50255 * 214.98016 * 6 3 2 9 9 O 1.21284 * 120.00109 * 0.08541 * 8 6 3 10 10 N 1.34777 * 120.00137 * 180.08326 * 8 6 3 11 11 C 1.46498 * 119.99828 * 0.28058 * 10 8 6 12 12 C 1.52999 * 109.47070 * 269.71859 * 11 10 8 13 13 C 1.46506 * 119.99873 * 179.97438 * 10 8 6 14 14 H 1.08993 * 110.28939 * 359.30123 * 13 10 8 15 15 C 1.54261 * 110.32145 * 237.17283 * 13 10 8 16 16 C 1.54380 * 105.05764 * 241.10293 * 15 13 10 17 17 N 1.48560 * 104.59659 * 23.86096 * 16 15 13 18 18 C 1.46901 * 110.99759 * 200.95896 * 17 16 15 19 19 C 1.50705 * 109.46981 * 290.11998 * 18 17 16 20 20 O 1.21295 * 119.99977 * 0.02562 * 19 18 17 21 21 N 1.34772 * 119.99726 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99688 * 179.97438 * 21 19 18 23 23 H 1.08006 * 120.00177 * 0.02562 * 22 21 19 24 24 C 1.38953 * 120.00131 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00226 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99631 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47356 * 89.99853 * 26 24 22 28 28 H 1.48503 * 109.46805 * 209.99356 * 26 24 22 29 29 H 1.48496 * 109.47061 * 329.98905 * 26 24 22 30 30 C 1.48825 * 104.23416 * 320.48647 * 17 16 15 31 31 H 1.09004 * 109.46807 * 59.99906 * 1 2 3 32 32 H 1.08999 * 109.46947 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46721 * 300.00167 * 1 2 3 34 34 H 1.09000 * 109.47137 * 239.99761 * 2 1 3 35 35 H 1.09004 * 109.46807 * 120.00094 * 2 1 3 36 36 H 1.09001 * 117.51595 * 145.03695 * 5 3 2 37 37 H 1.08999 * 117.51371 * 359.97438 * 5 3 2 38 38 H 1.08993 * 109.47575 * 29.72405 * 11 10 8 39 39 H 1.09001 * 109.46870 * 149.72361 * 11 10 8 40 40 H 1.09001 * 109.47317 * 59.99875 * 12 11 10 41 41 H 1.08994 * 109.47777 * 180.02562 * 12 11 10 42 42 H 1.09002 * 109.47116 * 300.00653 * 12 11 10 43 43 H 1.08993 * 110.33011 * 0.02562 * 15 13 10 44 44 H 1.09003 * 110.32002 * 122.21244 * 15 13 10 45 45 H 1.09005 * 110.40692 * 142.63403 * 16 15 13 46 46 H 1.08994 * 110.41507 * 264.95399 * 16 15 13 47 47 H 1.08998 * 109.47468 * 50.12367 * 18 17 16 48 48 H 1.08998 * 109.46821 * 170.12642 * 18 17 16 49 49 H 0.96995 * 120.00667 * 0.02562 * 21 19 18 50 50 H 0.96997 * 119.99883 * 180.02562 * 25 24 22 51 51 H 1.09001 * 110.45212 * 280.77856 * 30 17 16 52 52 H 1.08998 * 110.49708 * 158.24846 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1717 0.4813 5 6 2.8449 1.9074 -1.2162 6 6 3.5502 1.6578 0.1183 7 1 4.1803 0.7718 0.1966 8 6 4.0230 2.8618 0.8914 9 8 3.2160 3.6157 1.3928 10 7 5.3426 3.1009 1.0257 11 6 6.3172 2.1937 0.4149 12 6 6.6822 1.0915 1.4113 13 6 5.8021 4.2718 1.7769 14 1 4.9499 4.8429 2.1451 15 6 6.6988 5.1595 0.8894 16 6 8.0684 5.1848 1.6015 17 7 8.0883 3.9444 2.4188 18 6 9.0652 4.0494 3.5109 19 6 10.4602 4.0272 2.9410 20 8 10.6243 3.9337 1.7428 21 7 11.5252 4.1112 3.7626 22 6 12.7942 4.0905 3.2441 23 1 12.9404 4.0073 2.1773 24 6 13.8923 4.1777 4.0911 25 7 15.1086 4.1584 3.5942 26 14 13.6393 4.3225 5.9363 27 1 13.5961 2.9655 6.5380 28 1 14.7617 5.0920 6.5308 29 1 12.3594 5.0251 6.2068 30 6 6.7032 3.8351 2.9519 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.7228 2.9425 -1.5350 37 1 3.0112 1.1856 -2.0159 38 1 5.8857 1.7459 -0.4802 39 1 7.2141 2.7517 0.1458 40 1 5.7854 0.5335 1.6806 41 1 7.4077 0.4167 0.9572 42 1 7.1138 1.5393 2.3065 43 1 6.7967 4.7244 -0.1051 44 1 6.2877 6.1669 0.8237 45 1 8.8770 5.1715 0.8706 46 1 8.1487 6.0644 2.2400 47 1 8.9080 4.9832 4.0506 48 1 8.9384 3.2093 4.1938 49 1 11.3939 4.1857 4.7208 50 1 15.8751 4.2189 4.1855 51 1 6.5687 4.5032 3.8027 52 1 6.4840 2.8062 3.2370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567942511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:32 Heat of formation + Delta-G solvation = -55.425685 kcal Electronic energy + Delta-G solvation = -30074.018949 eV Core-core repulsion = 26073.683392 eV Total energy + Delta-G solvation = -4000.335556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.64809 -40.52303 -39.39437 -37.86704 -36.57638 -35.87596 -33.76014 -33.19527 -32.66915 -31.04806 -29.73292 -28.32910 -26.08867 -25.35538 -24.62905 -24.00304 -22.38273 -21.86315 -21.25399 -21.13497 -20.16647 -19.79452 -18.51745 -17.72169 -17.50939 -16.92526 -16.50405 -16.29637 -16.13833 -15.83834 -15.41641 -15.35250 -15.09305 -14.92887 -14.71276 -14.50067 -14.42041 -13.96886 -13.87281 -13.59356 -13.40115 -13.24545 -13.10616 -13.00820 -12.96807 -12.94334 -12.64650 -12.41169 -12.40626 -12.20138 -12.13604 -11.97730 -11.90674 -11.77786 -11.64617 -11.46376 -11.22747 -10.92945 -10.70566 -10.39391 -10.21831 -9.69552 -9.38032 -8.39740 -5.99779 1.30180 1.35529 1.43927 1.45085 1.93282 1.99053 2.23355 2.64437 2.86599 3.15912 3.26458 3.39275 3.62453 3.72720 3.79167 3.86568 4.07545 4.11101 4.16443 4.21319 4.29378 4.30014 4.39057 4.39597 4.45240 4.49832 4.50973 4.57814 4.65154 4.68167 4.72319 4.79454 4.85251 4.93690 4.98662 5.03446 5.04601 5.12861 5.15750 5.17466 5.24048 5.31308 5.49367 5.51717 5.54035 5.62654 5.86258 5.87658 6.01095 6.44172 6.61687 6.90973 7.15189 7.42575 7.99897 8.77831 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026065 B = 0.002140 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.981059 B =13079.838376 C =13237.479219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.120 4.120 4 H 0.094 0.906 5 C -0.137 4.137 6 C -0.196 4.196 7 H 0.142 0.858 8 C 0.541 3.459 9 O -0.587 6.587 10 N -0.590 5.590 11 C 0.112 3.888 12 C -0.166 4.166 13 C 0.140 3.860 14 H 0.100 0.900 15 C -0.123 4.123 16 C 0.038 3.962 17 N -0.494 5.494 18 C 0.042 3.958 19 C 0.456 3.544 20 O -0.602 6.602 21 N -0.595 5.595 22 C -0.323 4.323 23 H 0.057 0.943 24 C -0.016 4.016 25 N -0.935 5.935 26 Si 0.963 3.037 27 H -0.258 1.258 28 H -0.277 1.277 29 H -0.233 1.233 30 C 0.022 3.978 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.079 0.921 48 H 0.118 0.882 49 H 0.388 0.612 50 H 0.278 0.722 51 H 0.067 0.933 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.865 -6.363 -2.379 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.128 4.128 3 C -0.139 4.139 4 H 0.112 0.888 5 C -0.174 4.174 6 C -0.217 4.217 7 H 0.160 0.840 8 C 0.331 3.669 9 O -0.468 6.468 10 N -0.321 5.321 11 C -0.010 4.010 12 C -0.224 4.224 13 C 0.036 3.964 14 H 0.118 0.882 15 C -0.161 4.161 16 C -0.090 4.090 17 N -0.218 5.218 18 C -0.090 4.090 19 C 0.243 3.757 20 O -0.485 6.485 21 N -0.237 5.237 22 C -0.452 4.452 23 H 0.075 0.925 24 C -0.214 4.214 25 N -0.576 5.576 26 Si 0.783 3.217 27 H -0.182 1.182 28 H -0.202 1.202 29 H -0.156 1.156 30 C -0.106 4.106 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.147 0.853 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.096 0.904 48 H 0.136 0.864 49 H 0.223 0.777 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -27.771 -6.498 -3.216 28.701 hybrid contribution 0.882 1.066 1.418 1.981 sum -26.888 -5.431 -1.799 27.490 Atomic orbital electron populations 1.21742 0.94949 1.02212 1.01805 1.21155 0.96441 0.92316 1.02892 1.22478 0.90703 0.99370 1.01318 0.88763 1.23193 1.00640 1.03257 0.90310 1.22392 0.98113 0.98443 1.02736 0.84019 1.20211 0.81634 0.85779 0.79255 1.90641 1.54593 1.50547 1.51017 1.47967 1.05477 1.26038 1.52607 1.21570 0.92258 0.91075 0.96139 1.22237 1.01448 0.98212 1.00502 1.21726 0.96743 0.86521 0.91438 0.88209 1.22647 0.93579 1.00484 0.99433 1.23058 0.97784 0.90824 0.97329 1.65192 1.02930 1.35601 1.18083 1.22021 0.88884 1.03989 0.94074 1.20763 0.86972 0.81046 0.86899 1.90532 1.86807 1.54132 1.17033 1.42044 1.05152 1.67842 1.08654 1.18981 0.82325 1.49597 0.94342 0.92528 1.26073 0.93887 0.96374 1.05084 1.69801 0.99010 1.50547 1.38262 0.85393 0.79863 0.79793 0.76643 1.18208 1.20219 1.15646 1.23700 0.87531 1.03036 0.96324 0.92422 0.91558 0.93348 0.90141 0.91412 0.89366 0.85314 0.88863 0.90664 0.92168 0.91502 0.92147 0.90641 0.89382 0.91727 0.93551 0.90368 0.86385 0.77690 0.91262 0.91438 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.87 71.98 0.71 -0.82 16 2 C -0.09 -0.98 6.22 30.59 0.19 -0.79 16 3 C -0.12 -1.83 5.25 -10.77 -0.06 -1.89 16 4 H 0.09 1.89 7.60 -2.39 -0.02 1.87 16 5 C -0.14 -1.81 9.88 30.62 0.30 -1.51 16 6 C -0.20 -3.19 4.51 -11.54 -0.05 -3.24 16 7 H 0.14 1.81 6.50 -2.39 -0.02 1.79 16 8 C 0.54 12.47 7.46 87.66 0.65 13.12 16 9 O -0.59 -17.71 15.61 -3.04 -0.05 -17.76 16 10 N -0.59 -12.62 2.38 -792.87 -1.89 -14.51 16 11 C 0.11 2.18 5.02 86.38 0.43 2.61 16 12 C -0.17 -3.16 9.73 71.98 0.70 -2.46 16 13 C 0.14 3.14 3.46 45.89 0.16 3.30 16 14 H 0.10 2.40 6.96 -2.39 -0.02 2.38 16 15 C -0.12 -2.82 6.16 31.49 0.19 -2.62 16 16 C 0.04 1.09 5.80 86.45 0.50 1.59 16 17 N -0.49 -13.87 4.44 -885.29 -3.93 -17.80 16 18 C 0.04 1.24 5.30 85.56 0.45 1.70 16 19 C 0.46 19.91 7.59 87.66 0.66 20.57 16 20 O -0.60 -31.96 14.42 -3.08 -0.04 -32.01 16 21 N -0.59 -27.52 5.09 -306.97 -1.56 -29.09 16 22 C -0.32 -18.68 10.16 84.04 0.85 -17.82 16 23 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 24 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 25 N -0.94 -56.13 13.96 21.66 0.30 -55.83 16 26 Si 0.96 38.61 27.74 68.60 1.90 40.52 16 27 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 28 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 29 H -0.23 -7.88 6.52 99.48 0.65 -7.23 16 30 C 0.02 0.49 5.20 86.40 0.45 0.93 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 34 H 0.08 0.65 7.88 -2.39 -0.02 0.63 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.13 1.08 8.03 -2.39 -0.02 1.06 16 38 H 0.09 1.41 6.64 -2.39 -0.02 1.40 16 39 H 0.07 1.83 6.55 -2.39 -0.02 1.81 16 40 H 0.06 0.97 7.46 -2.39 -0.02 0.95 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.06 1.36 5.10 -2.39 -0.01 1.34 16 43 H 0.07 1.79 6.86 -2.39 -0.02 1.78 16 44 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.06 2.35 6.91 -2.38 -0.02 2.34 16 46 H 0.05 1.25 7.83 -2.39 -0.02 1.23 16 47 H 0.08 1.96 7.88 -2.39 -0.02 1.94 16 48 H 0.12 2.89 8.13 -2.39 -0.02 2.87 16 49 H 0.39 14.94 5.76 -92.71 -0.53 14.40 16 50 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 51 H 0.07 1.29 8.00 -2.39 -0.02 1.27 16 52 H 0.10 2.05 5.76 -2.39 -0.01 2.04 16 Total: -1.00 -76.45 404.01 1.68 -74.76 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: 0.33 Total: 39.44 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 6.62 Total: 12.27 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -7.08 Total: -117.22 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -0.09 Total: -49.77 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 1.90 Total: 40.52 kcal Total: -76.45 1.68 -74.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567942511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.337 kcal (2) G-P(sol) polarization free energy of solvation -76.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds