Wall clock time and date at job start Tue Mar 31 2020 20:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47023 * 2 1 4 4 H 1.08998 * 109.46982 * 305.35641 * 3 2 1 5 5 C 1.50702 * 109.46873 * 185.35932 * 3 2 1 6 6 O 1.21287 * 119.99651 * 239.99549 * 5 3 2 7 7 N 1.34778 * 120.00367 * 60.00025 * 5 3 2 8 8 C 1.46494 * 120.00201 * 180.02562 * 7 5 3 9 9 C 1.52995 * 109.47281 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.47500 * 64.99383 * 9 8 7 11 11 N 1.46501 * 109.46864 * 304.99357 * 9 8 7 12 12 C 1.36937 * 120.00061 * 154.99791 * 11 9 8 13 13 H 1.07998 * 119.99746 * 0.02562 * 12 11 9 14 14 C 1.38812 * 120.00029 * 180.02562 * 12 11 9 15 15 N 1.31619 * 120.00000 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 120.00088 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.46827 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47337 * 119.99782 * 16 14 12 19 19 H 1.48501 * 109.46941 * 239.99940 * 16 14 12 20 20 C 1.53003 * 109.47399 * 184.99924 * 9 8 7 21 21 C 1.52994 * 109.47082 * 179.97438 * 20 9 8 22 22 C 1.53004 * 109.46880 * 299.99619 * 20 9 8 23 23 C 1.50693 * 109.47204 * 65.35910 * 3 2 1 24 24 C 1.41381 * 128.00929 * 63.84700 * 23 3 2 25 25 C 1.50697 * 126.80314 * 0.03448 * 24 23 3 26 26 N 1.30172 * 106.39862 * 180.02562 * 24 23 3 27 27 O 1.20929 * 111.60418 * 359.72578 * 26 24 23 28 28 C 1.34041 * 111.56221 * 0.45024 * 27 26 24 29 29 C 1.50697 * 126.77416 * 179.83051 * 28 27 26 30 30 H 1.09005 * 109.47334 * 299.99952 * 1 2 3 31 31 H 1.09000 * 109.47458 * 60.00285 * 1 2 3 32 32 H 1.08999 * 109.47071 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47334 * 240.00048 * 2 1 3 34 34 H 1.09001 * 109.46984 * 119.99956 * 2 1 3 35 35 H 0.97006 * 119.99555 * 359.97438 * 7 5 3 36 36 H 1.09007 * 109.47163 * 299.99850 * 8 7 5 37 37 H 1.08998 * 109.47325 * 59.99533 * 8 7 5 38 38 H 0.97006 * 120.00260 * 335.00408 * 11 9 8 39 39 H 0.97007 * 119.99645 * 179.97438 * 15 14 12 40 40 H 1.09000 * 109.47237 * 59.99297 * 20 9 8 41 41 H 1.09000 * 109.47485 * 59.99661 * 21 20 9 42 42 H 1.09003 * 109.47020 * 179.97438 * 21 20 9 43 43 H 1.09000 * 109.47456 * 299.99194 * 21 20 9 44 44 H 1.09004 * 109.46861 * 59.99869 * 22 20 9 45 45 H 1.08995 * 109.46691 * 179.97438 * 22 20 9 46 46 H 1.09000 * 109.46923 * 299.99871 * 22 20 9 47 47 H 1.09001 * 109.47156 * 95.33580 * 25 24 23 48 48 H 1.08995 * 109.47496 * 215.33913 * 25 24 23 49 49 H 1.09000 * 109.47136 * 335.34359 * 25 24 23 50 50 H 1.09007 * 109.47001 * 269.68856 * 29 28 27 51 51 H 1.09001 * 109.47145 * 29.68094 * 29 28 27 52 52 H 1.08998 * 109.47666 * 149.68319 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6004 1.9833 -0.8381 5 6 3.5411 1.4446 -0.1327 6 8 4.2260 1.9421 0.7359 7 7 4.1226 0.8937 -1.2166 8 6 5.5819 0.8951 -1.3453 9 6 5.9789 0.2145 -2.6568 10 1 5.6147 0.8050 -3.4974 11 7 5.3894 -1.1255 -2.7094 12 6 5.1542 -1.7231 -3.9189 13 1 5.4038 -1.2066 -4.8339 14 6 4.5951 -2.9926 -3.9688 15 7 4.2914 -3.6223 -2.8536 16 14 4.2749 -3.8081 -5.6187 17 1 4.7022 -2.8982 -6.7116 18 1 5.0428 -5.0764 -5.7013 19 1 2.8248 -4.0976 -5.7546 20 6 7.5031 0.1044 -2.7332 21 6 7.9000 -0.5768 -4.0444 22 6 8.1189 1.5040 -2.6782 23 6 1.6489 2.1136 1.2914 24 6 2.0612 1.7846 2.6031 25 6 2.9975 0.6737 3.0032 26 7 1.4721 2.6316 3.3968 27 8 0.7832 3.4127 2.7822 28 6 0.8205 3.1712 1.4642 29 6 0.0902 3.9307 0.3868 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.5748 0.4955 -1.9112 36 1 5.9456 1.9227 -1.3451 37 1 6.0211 0.3541 -0.5072 38 1 5.1655 -1.5896 -1.8875 39 1 3.9003 -4.5093 -2.8885 40 1 7.8674 -0.4861 -1.8926 41 1 7.5357 0.0134 -4.8853 42 1 8.9859 -0.6548 -4.0991 43 1 7.4614 -1.5739 -4.0832 44 1 7.8360 1.9889 -1.7439 45 1 9.2047 1.4255 -2.7323 46 1 7.7546 2.0945 -3.5189 47 1 4.0088 1.0684 3.1014 48 1 2.6771 0.2541 3.9568 49 1 2.9841 -0.1051 2.2407 50 1 -0.8847 3.4735 0.2172 51 1 -0.0437 4.9663 0.6994 52 1 0.6705 3.9017 -0.5354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568465326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:25 Heat of formation + Delta-G solvation = 7.349192 kcal Electronic energy + Delta-G solvation = -31033.160518 eV Core-core repulsion = 27035.547085 eV Total energy + Delta-G solvation = -3997.613433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.83722 -39.75196 -37.43162 -35.97065 -34.13635 -33.65693 -33.16707 -32.75723 -30.44725 -29.05155 -28.52494 -27.99886 -26.87358 -26.07280 -23.83146 -22.77827 -22.17236 -21.22349 -20.12600 -19.92253 -19.20866 -17.71197 -17.42691 -16.86915 -16.46128 -15.82211 -15.32743 -15.09003 -14.53675 -14.26375 -14.02669 -13.88690 -13.59153 -13.51913 -13.41910 -13.31298 -13.08520 -12.90714 -12.87194 -12.65733 -12.37350 -12.25101 -12.13420 -12.05706 -11.84866 -11.66326 -11.28651 -11.10337 -11.01553 -10.95547 -10.86747 -10.67521 -10.55953 -10.32980 -10.12585 -9.98803 -9.72071 -9.60218 -9.50417 -9.05119 -8.95863 -8.62531 -7.08036 -5.87437 -3.16446 1.50665 2.31918 2.88902 3.13881 3.34737 3.41941 3.43832 3.57087 4.27884 4.48622 4.49011 4.65636 4.78206 4.98757 5.09903 5.11123 5.22617 5.29148 5.30203 5.34210 5.41652 5.44783 5.50093 5.59650 5.64013 5.68577 5.71138 5.72136 5.78720 5.86573 5.87560 5.96793 5.98376 6.05497 6.13224 6.17137 6.20279 6.21227 6.34249 6.41529 6.42089 6.50350 6.59246 6.64854 6.90324 7.03470 7.25543 7.62432 7.90549 8.29851 8.39303 8.54380 9.42330 9.96703 10.32891 11.34224 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.003403 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.633416 B = 8226.818314 C = 9524.721583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.028 4.028 4 H 0.104 0.896 5 C 0.514 3.486 6 O -0.543 6.543 7 N -0.710 5.710 8 C 0.115 3.885 9 C 0.170 3.830 10 H 0.053 0.947 11 N -0.721 5.721 12 C -0.237 4.237 13 H 0.073 0.927 14 C -0.009 4.009 15 N -0.928 5.928 16 Si 0.900 3.100 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.109 4.109 21 C -0.139 4.139 22 C -0.149 4.149 23 C -0.167 4.167 24 C 0.057 3.943 25 C -0.073 4.073 26 N -0.377 5.377 27 O 0.091 5.909 28 C -0.037 4.037 29 C -0.072 4.072 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.410 0.590 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.062 0.938 41 H 0.040 0.960 42 H 0.031 0.969 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.045 0.955 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.068 0.932 49 H 0.079 0.921 50 H 0.087 0.913 51 H 0.082 0.918 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.080 12.013 4.370 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.050 4.050 4 H 0.122 0.878 5 C 0.299 3.701 6 O -0.421 6.421 7 N -0.362 5.362 8 C -0.010 4.010 9 C 0.060 3.940 10 H 0.071 0.929 11 N -0.362 5.362 12 C -0.367 4.367 13 H 0.091 0.909 14 C -0.205 4.205 15 N -0.576 5.576 16 Si 0.731 3.269 17 H -0.206 1.206 18 H -0.220 1.220 19 H -0.219 1.219 20 C -0.131 4.131 21 C -0.196 4.196 22 C -0.207 4.207 23 C -0.172 4.172 24 C -0.102 4.102 25 C -0.131 4.131 26 N -0.084 5.084 27 O 0.028 5.972 28 C -0.100 4.100 29 C -0.130 4.130 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.246 0.754 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.105 0.895 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.105 0.895 48 H 0.087 0.913 49 H 0.097 0.903 50 H 0.105 0.895 51 H 0.101 0.899 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.621 12.503 6.114 15.010 hybrid contribution -0.197 -1.182 -1.744 2.115 sum -5.818 11.321 4.371 13.458 Atomic orbital electron populations 1.21732 0.95018 1.02105 1.01539 1.21618 0.96707 0.93021 1.04203 1.19647 0.93314 0.98013 0.94061 0.87760 1.20301 0.89611 0.78244 0.81955 1.90674 1.65014 1.45915 1.40480 1.45968 1.08407 1.59008 1.22786 1.21720 0.79618 1.00326 0.99306 1.20542 0.91517 0.88180 0.93798 0.92915 1.42462 1.73503 1.13719 1.06542 1.19233 1.33760 0.98028 0.85725 0.90906 1.24704 1.01855 0.97446 0.96542 1.69665 1.48638 1.14357 1.24926 0.86229 0.77530 0.79487 0.83605 1.20572 1.21953 1.21944 1.21727 0.97563 0.94951 0.98856 1.21819 0.98591 1.03294 0.95942 1.21940 0.99992 0.97713 1.01038 1.20261 1.02136 0.99324 0.95440 1.23251 0.98974 0.98493 0.89514 1.20224 0.97389 0.93814 1.01635 1.73789 1.09486 1.04407 1.20764 1.84769 1.51824 1.44211 1.16398 1.24094 1.01496 0.98206 0.86244 1.20315 0.99713 0.99607 0.93340 0.93088 0.92500 0.92135 0.89533 0.90962 0.75364 0.91718 0.91965 0.78098 0.93550 0.91929 0.94080 0.95017 0.89495 0.93077 0.93583 0.93213 0.89513 0.91318 0.90267 0.89484 0.89947 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.73 37.16 0.36 -1.17 16 2 C -0.12 -1.44 5.30 -26.73 -0.14 -1.58 16 3 C -0.03 -0.35 2.46 -92.92 -0.23 -0.58 16 4 H 0.10 1.06 7.10 -51.93 -0.37 0.69 16 5 C 0.51 7.81 6.84 -10.98 -0.08 7.73 16 6 O -0.54 -9.83 14.00 5.55 0.08 -9.75 16 7 N -0.71 -10.75 5.25 -60.30 -0.32 -11.07 16 8 C 0.11 1.82 4.73 -4.05 -0.02 1.81 16 9 C 0.17 2.94 2.18 -67.93 -0.15 2.79 16 10 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 11 N -0.72 -15.34 4.44 -53.43 -0.24 -15.58 16 12 C -0.24 -5.67 7.57 -15.06 -0.11 -5.79 16 13 H 0.07 1.73 7.39 -52.49 -0.39 1.34 16 14 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 15 N -0.93 -25.43 13.06 55.49 0.72 -24.71 16 16 Si 0.90 20.70 29.55 -169.99 -5.02 15.67 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.11 -1.78 2.69 -90.62 -0.24 -2.03 16 21 C -0.14 -2.41 8.26 37.15 0.31 -2.10 16 22 C -0.15 -2.03 8.84 37.16 0.33 -1.70 16 23 C -0.17 -2.24 3.53 -104.43 -0.37 -2.61 16 24 C 0.06 0.85 6.66 -82.10 -0.55 0.31 16 25 C -0.07 -1.02 9.01 36.00 0.32 -0.70 16 26 N -0.38 -5.90 12.07 33.42 0.40 -5.49 16 27 O 0.09 1.27 11.20 17.17 0.19 1.46 16 28 C -0.04 -0.44 7.49 -35.30 -0.26 -0.70 16 29 C -0.07 -0.53 10.19 36.00 0.37 -0.16 16 30 H 0.05 0.54 7.39 -51.93 -0.38 0.16 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.15 7.42 -51.93 -0.39 0.77 16 34 H 0.07 0.95 5.76 -51.93 -0.30 0.65 16 35 H 0.41 6.23 7.49 -40.82 -0.31 5.92 16 36 H 0.06 0.99 6.71 -51.92 -0.35 0.64 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.38 9.02 7.80 -40.82 -0.32 8.70 16 39 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 1.79 6.01 -51.93 -0.31 1.48 16 44 H 0.05 0.66 6.54 -51.93 -0.34 0.32 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.09 1.30 7.72 -51.93 -0.40 0.90 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.08 1.09 5.74 -51.93 -0.30 0.79 16 50 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.09 0.58 7.34 -51.93 -0.38 0.20 16 LS Contribution 408.24 15.07 6.15 6.15 Total: -1.00 -29.11 408.24 -7.32 -36.43 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -8.73 Total: 13.70 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.56 Total: -6.82 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.57 Total: -56.85 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.27 Total: -8.29 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -29.11 -7.32 -36.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568465326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.781 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds