Wall clock time and date at job start Tue Mar 31 2020 20:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47343 * 2 1 4 4 H 1.09003 * 109.46804 * 54.46839 * 3 2 1 5 5 C 1.50692 * 109.47404 * 174.47238 * 3 2 1 6 6 O 1.21278 * 120.00296 * 122.43255 * 5 3 2 7 7 N 1.34781 * 120.00045 * 302.42903 * 5 3 2 8 8 C 1.46495 * 120.00079 * 175.30940 * 7 5 3 9 9 C 1.52998 * 109.47141 * 180.02562 * 8 7 5 10 10 H 1.08994 * 109.47661 * 64.99930 * 9 8 7 11 11 N 1.46508 * 109.46976 * 304.99982 * 9 8 7 12 12 C 1.36939 * 119.99450 * 154.99956 * 11 9 8 13 13 H 1.08000 * 120.00449 * 359.97438 * 12 11 9 14 14 C 1.38812 * 119.99433 * 179.97438 * 12 11 9 15 15 N 1.31618 * 120.00183 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99968 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47201 * 90.00229 * 16 14 12 18 18 H 1.48499 * 109.47336 * 210.00147 * 16 14 12 19 19 H 1.48498 * 109.47316 * 330.00287 * 16 14 12 20 20 C 1.53005 * 109.47344 * 185.00147 * 9 8 7 21 21 C 1.52998 * 109.47344 * 180.02562 * 20 9 8 22 22 C 1.52994 * 109.46807 * 300.00107 * 20 9 8 23 23 C 1.50696 * 109.46874 * 294.47489 * 3 2 1 24 24 C 1.41379 * 128.01075 * 119.99981 * 23 3 2 25 25 C 1.50692 * 126.80318 * 359.97438 * 24 23 3 26 26 N 1.30184 * 106.39632 * 179.97438 * 24 23 3 27 27 O 1.20922 * 111.60388 * 0.02562 * 26 24 23 28 28 C 1.34040 * 111.56610 * 359.75747 * 27 26 24 29 29 C 1.50706 * 126.77561 * 180.28833 * 28 27 26 30 30 H 1.09003 * 109.47188 * 185.28858 * 1 2 3 31 31 H 1.08996 * 109.46943 * 305.28957 * 1 2 3 32 32 H 1.09003 * 109.46892 * 65.28744 * 1 2 3 33 33 H 1.08999 * 109.47455 * 239.99209 * 2 1 3 34 34 H 1.09003 * 109.46937 * 119.99620 * 2 1 3 35 35 H 0.97006 * 119.99953 * 355.31157 * 7 5 3 36 36 H 1.08999 * 109.47523 * 300.00027 * 8 7 5 37 37 H 1.09003 * 109.47185 * 60.00085 * 8 7 5 38 38 H 0.96994 * 119.99805 * 334.99923 * 11 9 8 39 39 H 0.97006 * 120.00388 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.47059 * 60.00061 * 20 9 8 41 41 H 1.09004 * 109.47292 * 59.99358 * 21 20 9 42 42 H 1.08996 * 109.47458 * 180.02562 * 21 20 9 43 43 H 1.09009 * 109.47307 * 300.00224 * 21 20 9 44 44 H 1.09001 * 109.47354 * 59.99857 * 22 20 9 45 45 H 1.09000 * 109.47228 * 180.02562 * 22 20 9 46 46 H 1.09008 * 109.47061 * 299.99820 * 22 20 9 47 47 H 1.09002 * 109.46947 * 90.00101 * 25 24 23 48 48 H 1.08998 * 109.47792 * 210.00422 * 25 24 23 49 49 H 1.09003 * 109.47537 * 330.00367 * 25 24 23 50 50 H 1.08996 * 109.47131 * 270.11214 * 29 28 27 51 51 H 1.09003 * 109.46928 * 30.11989 * 29 28 27 52 52 H 1.08997 * 109.46543 * 150.11405 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5981 1.9841 0.8363 5 6 3.5408 1.4447 0.1369 6 8 4.2260 1.9801 -0.7085 7 7 4.1215 0.8517 1.1988 8 6 5.5815 0.7635 1.2808 9 6 5.9774 0.0495 2.5747 10 1 5.6276 -0.9822 2.5422 11 7 5.3686 0.7358 3.7170 12 6 5.1330 0.0524 4.8801 13 1 5.3956 -0.9925 4.9551 14 6 4.5567 0.7027 5.9625 15 7 4.2362 1.9760 5.8709 16 14 4.2346 -0.2296 7.5489 17 1 5.4216 -0.1239 8.4349 18 1 3.0524 0.3522 8.2338 19 1 3.9737 -1.6583 7.2392 20 6 7.5003 0.0673 2.7217 21 6 7.8963 -0.6472 4.0153 22 6 8.1361 -0.6493 1.5287 23 6 1.6526 2.1122 -1.2931 24 6 0.8485 3.2613 -1.4716 25 6 0.1920 4.0806 -0.3905 26 7 0.7875 3.4715 -2.7549 27 8 1.4172 2.6439 -3.3720 28 6 1.9980 1.7556 -2.5534 29 6 2.8632 0.5890 -2.9558 30 1 -0.3634 -1.0233 0.0947 31 1 -0.3633 0.5937 0.8388 32 1 -0.3633 0.4296 -0.9336 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.5727 0.4833 1.9088 36 1 5.9602 0.2026 0.4263 37 1 6.0071 1.7670 1.2741 38 1 5.1324 1.6741 3.6494 39 1 3.8330 2.4304 6.6272 40 1 7.8502 1.0991 2.7543 41 1 7.5464 -1.6790 3.9823 42 1 8.9811 -0.6342 4.1202 43 1 7.4432 -0.1371 4.8655 44 1 7.8540 -0.1406 0.6069 45 1 9.2209 -0.6371 1.6336 46 1 7.7862 -1.6811 1.4961 47 1 0.8702 4.8724 -0.0724 48 1 -0.7266 4.5224 -0.7765 49 1 -0.0423 3.4397 0.4594 50 1 2.2380 -0.2899 -3.1126 51 1 3.3906 0.8293 -3.8790 52 1 3.5868 0.3842 -2.1668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568465327.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:28 Heat of formation + Delta-G solvation = 6.343129 kcal Electronic energy + Delta-G solvation = -30950.328914 eV Core-core repulsion = 26952.671854 eV Total energy + Delta-G solvation = -3997.657059 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.85831 -39.81260 -37.44403 -36.01087 -34.15268 -33.90736 -33.16819 -32.50710 -30.45279 -29.09226 -28.64867 -28.00543 -26.88409 -26.07914 -23.83650 -22.83618 -22.18930 -21.28924 -20.44271 -19.69795 -19.09869 -17.68953 -17.35133 -17.11052 -16.56889 -15.78407 -15.41411 -15.02890 -14.68024 -14.12190 -13.97433 -13.92137 -13.72027 -13.54879 -13.44449 -13.28667 -13.08398 -13.02458 -12.86754 -12.68419 -12.46599 -12.28850 -12.08710 -12.06124 -11.94753 -11.67075 -11.49974 -11.09422 -10.99425 -10.90374 -10.87198 -10.79818 -10.66759 -10.32943 -10.15137 -10.00090 -9.85561 -9.59923 -9.48995 -9.03433 -8.95081 -8.64553 -7.08235 -5.86993 -3.16382 1.54496 2.22796 2.85659 3.14638 3.35409 3.41542 3.43368 3.56560 4.17788 4.46986 4.49197 4.63702 4.74044 4.89975 5.10047 5.13635 5.27707 5.29348 5.31018 5.35324 5.38325 5.45029 5.48212 5.49999 5.58057 5.59306 5.63726 5.70999 5.75532 5.80673 5.84693 5.86310 5.96174 5.97790 6.01290 6.08685 6.14677 6.19933 6.23458 6.33308 6.41107 6.49248 6.58634 6.64082 6.88797 7.03017 7.25337 7.61691 7.88168 8.30141 8.34401 8.50754 9.42392 9.96959 10.32819 11.34668 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011959 B = 0.003369 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.854125 B = 8310.150575 C = 9672.589718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.030 4.030 4 H 0.110 0.890 5 C 0.514 3.486 6 O -0.545 6.545 7 N -0.709 5.709 8 C 0.114 3.886 9 C 0.170 3.830 10 H 0.053 0.947 11 N -0.721 5.721 12 C -0.238 4.238 13 H 0.073 0.927 14 C -0.009 4.009 15 N -0.929 5.929 16 Si 0.901 3.099 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.282 1.282 20 C -0.109 4.109 21 C -0.139 4.139 22 C -0.149 4.149 23 C -0.176 4.176 24 C 0.029 3.971 25 C -0.078 4.078 26 N -0.373 5.373 27 O 0.090 5.910 28 C -0.003 4.003 29 C -0.075 4.075 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.410 0.590 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.062 0.938 41 H 0.040 0.960 42 H 0.031 0.969 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.045 0.955 46 H 0.049 0.951 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.080 0.920 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.523 -4.716 -13.818 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.052 4.052 4 H 0.128 0.872 5 C 0.300 3.700 6 O -0.423 6.423 7 N -0.361 5.361 8 C -0.010 4.010 9 C 0.060 3.940 10 H 0.071 0.929 11 N -0.363 5.363 12 C -0.369 4.369 13 H 0.091 0.909 14 C -0.206 4.206 15 N -0.577 5.577 16 Si 0.732 3.268 17 H -0.218 1.218 18 H -0.219 1.219 19 H -0.208 1.208 20 C -0.131 4.131 21 C -0.197 4.197 22 C -0.207 4.207 23 C -0.180 4.180 24 C -0.130 4.130 25 C -0.135 4.135 26 N -0.081 5.081 27 O 0.027 5.973 28 C -0.066 4.066 29 C -0.132 4.132 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.247 0.753 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.105 0.895 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.099 0.901 48 H 0.094 0.906 49 H 0.100 0.900 50 H 0.100 0.900 51 H 0.099 0.901 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.666 -3.559 -15.040 16.144 hybrid contribution -0.077 -0.586 2.007 2.092 sum -4.743 -4.145 -13.033 14.476 Atomic orbital electron populations 1.21742 0.94855 1.01920 1.02034 1.21592 0.96920 0.93453 1.03330 1.19628 0.93238 0.97586 0.94744 0.87223 1.20313 0.89629 0.78239 0.81851 1.90677 1.65013 1.44452 1.42123 1.45974 1.08371 1.58919 1.22816 1.21735 0.79566 1.01123 0.98614 1.20542 0.91405 0.95766 0.86302 0.92879 1.42465 1.72498 1.11288 1.10008 1.19187 1.33370 0.94157 0.90144 0.90927 1.24716 1.01733 0.95898 0.98216 1.69657 1.47909 1.08959 1.31125 0.86288 0.77489 0.78863 0.84114 1.21764 1.21867 1.20761 1.21733 0.97492 0.99297 0.94621 1.21821 0.98658 0.99858 0.99333 1.21939 0.99963 1.00311 0.98442 1.20175 1.04262 0.98788 0.94778 1.23355 1.00228 0.96667 0.92717 1.20187 1.00172 0.98795 0.94379 1.73801 1.15402 1.11656 1.07206 1.84754 1.48603 1.29642 1.34289 1.24050 0.98026 0.95271 0.89253 1.20435 0.97364 0.91323 1.04064 0.92290 0.92235 0.92919 0.91192 0.90287 0.75277 0.91677 0.91926 0.78100 0.93475 0.91932 0.94055 0.95003 0.89512 0.93080 0.93583 0.93199 0.90053 0.90630 0.89953 0.89975 0.90085 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.65 37.16 0.36 -1.00 16 2 C -0.12 -1.16 5.28 -26.73 -0.14 -1.30 16 3 C -0.03 -0.37 2.47 -92.93 -0.23 -0.60 16 4 H 0.11 1.32 7.34 -51.93 -0.38 0.94 16 5 C 0.51 7.70 6.27 -10.99 -0.07 7.63 16 6 O -0.54 -9.68 14.09 5.56 0.08 -9.60 16 7 N -0.71 -10.62 5.18 -60.30 -0.31 -10.94 16 8 C 0.11 1.79 4.73 -4.05 -0.02 1.77 16 9 C 0.17 2.92 2.18 -67.92 -0.15 2.77 16 10 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 11 N -0.72 -15.50 4.44 -53.42 -0.24 -15.74 16 12 C -0.24 -5.74 7.57 -15.06 -0.11 -5.85 16 13 H 0.07 1.72 7.40 -52.49 -0.39 1.34 16 14 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 15 N -0.93 -25.81 13.06 55.49 0.72 -25.09 16 16 Si 0.90 20.79 29.55 -169.99 -5.02 15.77 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 C -0.11 -1.78 2.69 -90.62 -0.24 -2.02 16 21 C -0.14 -2.40 8.26 37.16 0.31 -2.10 16 22 C -0.15 -1.97 8.84 37.15 0.33 -1.64 16 23 C -0.18 -2.34 3.63 -104.42 -0.38 -2.72 16 24 C 0.03 0.40 7.33 -82.10 -0.60 -0.20 16 25 C -0.08 -0.85 10.25 36.00 0.37 -0.48 16 26 N -0.37 -5.63 12.07 33.42 0.40 -5.22 16 27 O 0.09 1.29 11.20 17.18 0.19 1.48 16 28 C 0.00 -0.03 6.85 -35.30 -0.24 -0.27 16 29 C -0.07 -0.75 8.70 36.01 0.31 -0.44 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.51 7.57 -51.93 -0.39 0.12 16 33 H 0.07 0.66 6.34 -51.93 -0.33 0.33 16 34 H 0.08 0.79 7.37 -51.93 -0.38 0.40 16 35 H 0.41 6.22 7.49 -40.82 -0.31 5.92 16 36 H 0.07 0.94 6.71 -51.93 -0.35 0.59 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.38 9.19 7.80 -40.82 -0.32 8.87 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 1.79 6.01 -51.92 -0.31 1.48 16 44 H 0.05 0.64 6.54 -51.93 -0.34 0.30 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.08 0.77 7.55 -51.93 -0.39 0.38 16 50 H 0.08 0.63 7.95 -51.93 -0.41 0.21 16 51 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 52 H 0.10 1.11 5.67 -51.93 -0.29 0.82 16 LS Contribution 408.80 15.07 6.16 6.16 Total: -1.00 -29.26 408.80 -7.42 -36.68 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -8.80 Total: 13.27 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.61 Total: -6.78 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.58 Total: -56.98 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.27 Total: -8.12 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -29.26 -7.42 -36.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568465327.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.026 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds