Wall clock time and date at job start Tue Mar 31 2020 20:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46966 * 2 1 4 4 H 1.09002 * 109.47099 * 305.35832 * 3 2 1 5 5 C 1.50707 * 109.46800 * 185.36300 * 3 2 1 6 6 O 1.21281 * 119.99734 * 239.99558 * 5 3 2 7 7 N 1.34772 * 120.00111 * 59.99613 * 5 3 2 8 8 C 1.46493 * 120.00208 * 179.97438 * 7 5 3 9 9 C 1.53000 * 109.47484 * 180.02562 * 8 7 5 10 10 H 1.09010 * 109.46894 * 294.99960 * 9 8 7 11 11 N 1.46491 * 109.47164 * 55.00130 * 9 8 7 12 12 C 1.36942 * 120.00102 * 205.00188 * 11 9 8 13 13 H 1.07994 * 119.99640 * 359.97438 * 12 11 9 14 14 C 1.38809 * 119.99918 * 179.97438 * 12 11 9 15 15 N 1.31617 * 120.00078 * 359.72659 * 14 12 11 16 16 Si 1.86800 * 119.99746 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47124 * 179.72460 * 16 14 12 18 18 H 1.48502 * 109.47337 * 299.72731 * 16 14 12 19 19 H 1.48498 * 109.47283 * 59.72805 * 16 14 12 20 20 C 1.53004 * 109.47135 * 175.00164 * 9 8 7 21 21 C 1.53002 * 109.47140 * 60.00196 * 20 9 8 22 22 C 1.52995 * 109.46850 * 179.97438 * 20 9 8 23 23 C 1.50702 * 109.47318 * 65.36153 * 3 2 1 24 24 C 1.41379 * 128.00425 * 63.87796 * 23 3 2 25 25 C 1.50695 * 126.80432 * 359.97438 * 24 23 3 26 26 N 1.30180 * 106.39235 * 179.97438 * 24 23 3 27 27 O 1.20924 * 111.60412 * 0.02562 * 26 24 23 28 28 C 1.34045 * 111.56734 * 359.76146 * 27 26 24 29 29 C 1.50695 * 126.77659 * 180.29509 * 28 27 26 30 30 H 1.09005 * 109.46899 * 60.00070 * 1 2 3 31 31 H 1.09000 * 109.46869 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47234 * 300.00226 * 1 2 3 33 33 H 1.09001 * 109.47234 * 239.99774 * 2 1 3 34 34 H 1.08997 * 109.46717 * 119.99689 * 2 1 3 35 35 H 0.97002 * 120.00069 * 0.02562 * 7 5 3 36 36 H 1.08999 * 109.47198 * 60.00070 * 8 7 5 37 37 H 1.09001 * 109.47571 * 300.00440 * 8 7 5 38 38 H 0.97003 * 120.00395 * 24.99638 * 11 9 8 39 39 H 0.96995 * 120.00591 * 0.27564 * 15 14 12 40 40 H 1.08992 * 109.47116 * 299.99686 * 20 9 8 41 41 H 1.08992 * 109.47533 * 59.99745 * 21 20 9 42 42 H 1.08992 * 109.46907 * 180.02562 * 21 20 9 43 43 H 1.09004 * 109.46517 * 299.99587 * 21 20 9 44 44 H 1.09002 * 109.47221 * 59.99938 * 22 20 9 45 45 H 1.09004 * 109.47378 * 179.97438 * 22 20 9 46 46 H 1.08998 * 109.47557 * 300.00046 * 22 20 9 47 47 H 1.09000 * 109.47108 * 95.37028 * 25 24 23 48 48 H 1.09001 * 109.47303 * 215.36327 * 25 24 23 49 49 H 1.09003 * 109.47516 * 335.36827 * 25 24 23 50 50 H 1.09003 * 109.46635 * 264.95878 * 29 28 27 51 51 H 1.09003 * 109.47194 * 24.95421 * 29 28 27 52 52 H 1.08994 * 109.47543 * 144.95966 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6004 1.9833 -0.8381 5 6 3.5412 1.4446 -0.1328 6 8 4.2261 1.9421 0.7357 7 7 4.1226 0.8936 -1.2167 8 6 5.5818 0.8961 -1.3461 9 6 5.9787 0.2152 -2.6574 10 1 5.6942 -0.8365 -2.6214 11 7 5.2923 0.8688 -3.7743 12 6 5.0615 0.1787 -4.9345 13 1 5.3861 -0.8472 -5.0260 14 6 4.4106 0.7979 -5.9926 15 7 4.0104 2.0466 -5.8790 16 14 4.0965 -0.1432 -7.5753 17 1 3.3852 0.7337 -8.5398 18 1 5.3917 -0.5743 -8.1602 19 1 3.2631 -1.3372 -7.2842 20 6 7.4921 0.3277 -2.8528 21 6 8.2090 -0.3551 -1.6863 22 6 7.8890 -0.3538 -4.1638 23 6 1.6490 2.1136 1.2915 24 6 2.0619 1.7850 2.6031 25 6 2.9978 0.6737 3.0031 26 7 1.4734 2.6326 3.3967 27 8 0.7799 3.4099 2.7826 28 6 0.8244 3.1743 1.4638 29 6 0.0990 3.9378 0.3859 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.5747 0.4961 -1.9115 36 1 6.0218 0.3556 -0.5080 37 1 5.9448 1.9238 -1.3463 38 1 5.0010 1.7904 -3.6922 39 1 4.1738 2.5355 -5.0573 40 1 7.7766 1.3792 -2.8888 41 1 7.9246 -1.4066 -1.6502 42 1 9.2871 -0.2745 -1.8252 43 1 7.9262 0.1301 -0.7520 44 1 7.3782 0.1322 -4.9951 45 1 8.9671 -0.2733 -4.3033 46 1 7.6046 -1.4054 -4.1274 47 1 4.0092 1.0681 3.1011 48 1 2.6774 0.2544 3.9568 49 1 2.9839 -0.1052 2.2407 50 1 -0.8374 3.4321 0.1501 51 1 -0.1118 4.9484 0.7357 52 1 0.7215 3.9849 -0.5076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568465328.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:31 Heat of formation + Delta-G solvation = 7.945901 kcal Electronic energy + Delta-G solvation = -31009.039899 eV Core-core repulsion = 27011.452342 eV Total energy + Delta-G solvation = -3997.587558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.88281 -39.84061 -37.54908 -36.05809 -34.22674 -33.72064 -33.48927 -32.83106 -30.33891 -29.09103 -28.60192 -27.96478 -26.91052 -26.01732 -23.68385 -22.90017 -22.32134 -21.34769 -20.19066 -19.99721 -19.29658 -17.75602 -17.53073 -17.06912 -16.56444 -15.94134 -15.39755 -14.93908 -14.76948 -14.37173 -14.22283 -13.78204 -13.71983 -13.61763 -13.50941 -13.38255 -13.32371 -13.09503 -12.85769 -12.74535 -12.41823 -12.31511 -12.24117 -12.07587 -11.93584 -11.70445 -11.38799 -11.24244 -11.13738 -10.96805 -10.84061 -10.68106 -10.45110 -10.20819 -10.11842 -9.94398 -9.79534 -9.58516 -9.26657 -9.09063 -8.96210 -8.72001 -7.15466 -6.18146 -3.20025 1.46961 2.25184 2.81931 3.10299 3.45197 3.45979 3.48646 3.64974 4.20716 4.44962 4.56832 4.57777 4.68153 4.85477 5.02236 5.08076 5.21036 5.24333 5.24654 5.26887 5.31245 5.37942 5.45389 5.53582 5.54176 5.57880 5.65751 5.67326 5.71550 5.75019 5.78520 5.84656 5.88242 5.91205 5.99920 6.05936 6.08475 6.12615 6.26462 6.27082 6.33609 6.43645 6.52257 6.58083 6.82008 6.96122 7.21893 7.72830 7.81342 8.34038 8.45752 8.65540 9.10101 9.96993 10.11927 11.28700 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011938 B = 0.003398 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.910927 B = 8236.983679 C = 9645.319411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.030 4.030 4 H 0.109 0.891 5 C 0.514 3.486 6 O -0.541 6.541 7 N -0.712 5.712 8 C 0.113 3.887 9 C 0.176 3.824 10 H 0.054 0.946 11 N -0.732 5.732 12 C -0.328 4.328 13 H 0.067 0.933 14 C -0.041 4.041 15 N -0.941 5.941 16 Si 1.074 2.926 17 H -0.286 1.286 18 H -0.295 1.295 19 H -0.296 1.296 20 C -0.109 4.109 21 C -0.149 4.149 22 C -0.138 4.138 23 C -0.171 4.171 24 C 0.054 3.946 25 C -0.071 4.071 26 N -0.376 5.376 27 O 0.091 5.909 28 C -0.030 4.030 29 C -0.075 4.075 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.367 0.633 39 H 0.255 0.745 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.046 0.954 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.031 0.969 46 H 0.041 0.959 47 H 0.086 0.914 48 H 0.068 0.932 49 H 0.075 0.925 50 H 0.088 0.912 51 H 0.083 0.917 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.288 -3.198 12.370 13.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.052 4.052 4 H 0.127 0.873 5 C 0.299 3.701 6 O -0.419 6.419 7 N -0.364 5.364 8 C -0.011 4.011 9 C 0.066 3.934 10 H 0.072 0.928 11 N -0.375 5.375 12 C -0.458 4.458 13 H 0.085 0.915 14 C -0.239 4.239 15 N -0.586 5.586 16 Si 0.905 3.095 17 H -0.211 1.211 18 H -0.223 1.223 19 H -0.223 1.223 20 C -0.131 4.131 21 C -0.207 4.207 22 C -0.196 4.196 23 C -0.175 4.175 24 C -0.105 4.105 25 C -0.128 4.128 26 N -0.084 5.084 27 O 0.029 5.971 28 C -0.094 4.094 29 C -0.133 4.133 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.246 0.754 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.201 0.799 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.105 0.895 45 H 0.050 0.950 46 H 0.060 0.940 47 H 0.105 0.895 48 H 0.087 0.913 49 H 0.094 0.906 50 H 0.107 0.893 51 H 0.102 0.898 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.415 -2.777 12.722 14.103 hybrid contribution 0.721 -0.232 0.404 0.858 sum -4.694 -3.009 13.126 14.261 Atomic orbital electron populations 1.21751 0.94761 1.02019 1.02073 1.21588 0.97015 0.93428 1.03257 1.19643 0.93286 0.97808 0.94439 0.87324 1.20313 0.89637 0.78174 0.81963 1.90676 1.64990 1.45477 1.40749 1.45984 1.08401 1.59513 1.22469 1.21742 0.79616 1.01174 0.98575 1.20476 0.90872 0.96134 0.85949 0.92776 1.42466 1.69055 1.13198 1.12765 1.19982 1.35753 0.97025 0.93072 0.91493 1.25665 0.98546 0.97811 1.01893 1.70891 1.49042 1.09720 1.28949 0.83314 0.76010 0.74360 0.75795 1.21146 1.22294 1.22301 1.21716 0.97031 0.99412 0.94910 1.21935 0.99803 1.00443 0.98471 1.21811 0.98815 0.99943 0.98984 1.20222 1.02560 0.99469 0.95279 1.23215 0.99185 0.98514 0.89569 1.20194 0.97513 0.93739 1.01390 1.73787 1.09337 1.04434 1.20851 1.84774 1.51376 1.44583 1.16400 1.24151 1.01225 0.97897 0.86117 1.20360 0.99889 0.99614 0.93403 0.92128 0.92262 0.92834 0.90358 0.91115 0.75440 0.91516 0.92128 0.79912 0.93371 0.92128 0.93142 0.93494 0.93093 0.89491 0.95008 0.94030 0.89536 0.91329 0.90598 0.89341 0.89830 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.73 37.16 0.36 -1.01 16 2 C -0.12 -1.21 5.30 -26.73 -0.14 -1.35 16 3 C -0.03 -0.37 2.46 -92.92 -0.23 -0.60 16 4 H 0.11 1.24 7.24 -51.93 -0.38 0.86 16 5 C 0.51 7.78 6.84 -10.98 -0.08 7.71 16 6 O -0.54 -9.76 13.99 5.56 0.08 -9.68 16 7 N -0.71 -10.78 5.25 -60.30 -0.32 -11.10 16 8 C 0.11 1.81 4.73 -4.05 -0.02 1.79 16 9 C 0.18 3.09 2.18 -67.93 -0.15 2.94 16 10 H 0.05 0.98 8.08 -51.92 -0.42 0.56 16 11 N -0.73 -15.73 4.44 -53.43 -0.24 -15.97 16 12 C -0.33 -8.00 7.57 -15.06 -0.11 -8.12 16 13 H 0.07 1.63 7.39 -52.49 -0.39 1.25 16 14 C -0.04 -1.08 5.50 -17.43 -0.10 -1.17 16 15 N -0.94 -26.73 13.70 55.49 0.76 -25.97 16 16 Si 1.07 24.05 29.92 -169.99 -5.09 18.97 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.30 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.30 -6.32 7.11 56.52 0.40 -5.92 16 20 C -0.11 -1.81 2.69 -90.62 -0.24 -2.05 16 21 C -0.15 -2.04 8.84 37.16 0.33 -1.71 16 22 C -0.14 -2.45 8.26 37.16 0.31 -2.14 16 23 C -0.17 -2.27 3.53 -104.42 -0.37 -2.64 16 24 C 0.05 0.78 6.66 -82.10 -0.55 0.24 16 25 C -0.07 -0.90 9.01 36.00 0.32 -0.57 16 26 N -0.38 -5.77 12.07 33.42 0.40 -5.37 16 27 O 0.09 1.28 11.20 17.16 0.19 1.47 16 28 C -0.03 -0.37 7.49 -35.31 -0.26 -0.63 16 29 C -0.08 -0.62 10.11 36.00 0.36 -0.26 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.52 7.39 -51.93 -0.38 0.13 16 33 H 0.08 0.81 7.42 -51.93 -0.39 0.42 16 34 H 0.07 0.74 5.76 -51.93 -0.30 0.44 16 35 H 0.41 6.26 7.50 -40.82 -0.31 5.96 16 36 H 0.07 1.01 6.71 -51.93 -0.35 0.66 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.37 8.47 6.63 -40.82 -0.27 8.20 16 39 H 0.25 7.16 6.77 -40.82 -0.28 6.88 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.66 6.54 -51.93 -0.34 0.32 16 44 H 0.09 1.84 6.01 -51.93 -0.31 1.53 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 1.19 7.72 -51.93 -0.40 0.79 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.08 0.88 5.74 -51.93 -0.30 0.58 16 50 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.09 0.76 7.56 -51.93 -0.39 0.37 16 LS Contribution 406.81 15.07 6.13 6.13 Total: -1.00 -30.15 406.81 -7.28 -37.43 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -8.64 Total: 13.65 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.56 Total: -9.57 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.61 Total: -58.40 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.27 Total: -8.21 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.09 Total: 18.97 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.15 -7.28 -37.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568465328.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.377 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds