Wall clock time and date at job start Tue Mar 31 2020 20:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46907 * 2 1 4 4 H 1.09001 * 109.47062 * 304.97530 * 3 2 1 5 5 C 1.50694 * 109.47349 * 64.97990 * 3 2 1 6 6 O 1.21283 * 120.00157 * 21.47098 * 5 3 2 7 7 N 1.34777 * 119.99986 * 201.46458 * 5 3 2 8 8 C 1.46500 * 119.99962 * 174.98217 * 7 5 3 9 9 C 1.52997 * 109.47131 * 180.02562 * 8 7 5 10 10 H 1.09002 * 109.47229 * 294.99579 * 9 8 7 11 11 N 1.46496 * 109.47330 * 55.00008 * 9 8 7 12 12 C 1.36940 * 120.00123 * 205.00537 * 11 9 8 13 13 H 1.08005 * 119.99643 * 359.97438 * 12 11 9 14 14 C 1.38816 * 120.00253 * 179.97438 * 12 11 9 15 15 N 1.31615 * 119.99662 * 179.71920 * 14 12 11 16 16 Si 1.86794 * 119.99777 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47331 * 269.72503 * 16 14 12 18 18 H 1.48503 * 109.47192 * 29.72641 * 16 14 12 19 19 H 1.48505 * 109.46860 * 149.72291 * 16 14 12 20 20 C 1.53001 * 109.47184 * 175.00151 * 9 8 7 21 21 C 1.52996 * 109.47470 * 59.99851 * 20 9 8 22 22 C 1.53004 * 109.47178 * 179.97438 * 20 9 8 23 23 C 1.50698 * 109.46951 * 184.98289 * 3 2 1 24 24 C 1.41387 * 128.00953 * 119.99688 * 23 3 2 25 25 C 1.50697 * 126.80018 * 359.97438 * 24 23 3 26 26 N 1.30170 * 106.39369 * 179.97438 * 24 23 3 27 27 O 1.20922 * 111.61091 * 359.97438 * 26 24 23 28 28 C 1.34048 * 111.56394 * 359.76483 * 27 26 24 29 29 C 1.50694 * 126.77814 * 180.28650 * 28 27 26 30 30 H 1.08997 * 109.47582 * 294.74164 * 1 2 3 31 31 H 1.09003 * 109.46838 * 54.74597 * 1 2 3 32 32 H 1.09002 * 109.46851 * 174.73490 * 1 2 3 33 33 H 1.09000 * 109.47269 * 239.99181 * 2 1 3 34 34 H 1.09004 * 109.46915 * 119.99600 * 2 1 3 35 35 H 0.96999 * 120.00075 * 354.99156 * 7 5 3 36 36 H 1.08994 * 109.47556 * 60.00367 * 8 7 5 37 37 H 1.09009 * 109.47057 * 300.00229 * 8 7 5 38 38 H 0.97000 * 120.00585 * 24.99711 * 11 9 8 39 39 H 0.97002 * 119.99667 * 180.27220 * 15 14 12 40 40 H 1.09002 * 109.47162 * 299.99098 * 20 9 8 41 41 H 1.09000 * 109.47048 * 59.99640 * 21 20 9 42 42 H 1.08997 * 109.47542 * 180.02562 * 21 20 9 43 43 H 1.09005 * 109.46918 * 300.00297 * 21 20 9 44 44 H 1.09009 * 109.46818 * 59.99627 * 22 20 9 45 45 H 1.08995 * 109.47493 * 179.97438 * 22 20 9 46 46 H 1.09000 * 109.46932 * 300.00110 * 22 20 9 47 47 H 1.09004 * 109.46791 * 89.99963 * 25 24 23 48 48 H 1.08993 * 109.47112 * 209.99772 * 25 24 23 49 49 H 1.08998 * 109.47144 * 330.00375 * 25 24 23 50 50 H 1.09004 * 109.46824 * 270.11365 * 29 28 27 51 51 H 1.08997 * 109.47270 * 30.10834 * 29 28 27 52 52 H 1.09001 * 109.47366 * 150.11152 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9814 -0.8421 5 6 1.6409 2.1164 1.2874 6 8 1.3717 1.4486 2.2634 7 7 1.5833 3.4613 1.3543 8 6 1.0903 4.1138 2.5699 9 6 1.1271 5.6320 2.3845 10 1 2.1612 5.9604 2.2802 11 7 0.3755 5.9954 1.1807 12 6 0.6643 7.1587 0.5183 13 1 1.4458 7.8084 0.8837 14 6 -0.0475 7.5028 -0.6227 15 7 0.2264 8.6235 -1.2561 16 14 -1.3987 6.3786 -1.2551 17 1 -0.8226 5.4044 -2.2164 18 1 -2.0084 5.6478 -0.1152 19 1 -2.4392 7.1901 -1.9363 20 6 0.4972 6.3100 3.6029 21 6 1.2821 5.9305 4.8603 22 6 0.5346 7.8283 3.4179 23 6 3.5419 1.4443 -0.1234 24 6 4.3313 2.0300 -1.1397 25 6 3.8354 2.7923 -2.3414 26 7 5.5711 1.7803 -0.8317 27 8 5.6561 1.1463 0.1945 28 6 4.4484 0.8908 0.7172 29 6 4.1568 0.1345 1.9875 30 1 -0.3634 0.4301 0.9333 31 1 -0.3633 0.5932 -0.8392 32 1 -0.3633 -1.0234 -0.0943 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.8681 3.9972 0.5977 36 1 1.7216 3.8350 3.4135 37 1 0.0654 3.7963 2.7625 38 1 -0.3265 5.4120 0.8526 39 1 -0.2737 8.8659 -2.0512 40 1 -0.5370 5.9818 3.7072 41 1 2.3162 6.2588 4.7559 42 1 0.8331 6.4132 5.7283 43 1 1.2558 4.8488 4.9923 44 1 -0.0243 8.0990 2.5220 45 1 0.0855 8.3113 4.2856 46 1 1.5689 8.1563 3.3137 47 1 3.7586 3.8510 -2.0936 48 1 4.5341 2.6623 -3.1678 49 1 2.8549 2.4151 -2.6317 50 1 4.0437 -0.9258 1.7613 51 1 4.9803 0.2705 2.6885 52 1 3.2356 0.5117 2.4316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568465329.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:34 Heat of formation + Delta-G solvation = 8.361034 kcal Electronic energy + Delta-G solvation = -31391.350606 eV Core-core repulsion = 27393.781050 eV Total energy + Delta-G solvation = -3997.569556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.99635 -40.01463 -37.62085 -35.91333 -34.27000 -33.87293 -33.18935 -32.85058 -30.91384 -29.32646 -28.70468 -28.04585 -26.82716 -26.26001 -23.83276 -22.49475 -22.30870 -21.36575 -20.61813 -19.84472 -19.26083 -17.80881 -17.65339 -17.15030 -16.91467 -15.89023 -15.54879 -15.15560 -14.65919 -14.15169 -14.09221 -13.98419 -13.69128 -13.63024 -13.47962 -13.31447 -13.14505 -12.99375 -12.92154 -12.68973 -12.53039 -12.42847 -12.33006 -12.18515 -11.68917 -11.65400 -11.44002 -11.22484 -11.14994 -11.06880 -10.93958 -10.93461 -10.69590 -10.28934 -10.20994 -10.08842 -10.02970 -9.69697 -9.54529 -9.12903 -8.97739 -8.77901 -7.39543 -5.86833 -3.23171 1.37146 2.08383 2.67521 3.05379 3.26419 3.31525 3.35977 3.39320 4.10243 4.38526 4.48607 4.53205 4.72112 4.79017 5.04159 5.09551 5.10449 5.20172 5.25274 5.30828 5.36562 5.37663 5.41354 5.49416 5.53783 5.57572 5.63246 5.67201 5.68733 5.72058 5.75076 5.83712 5.86361 5.93684 6.01479 6.07609 6.13862 6.14794 6.22116 6.24879 6.34755 6.45433 6.52924 6.58188 6.77871 6.96000 7.29174 7.71753 7.89034 8.22668 8.30981 8.34043 9.09041 9.81095 10.00396 11.30728 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009729 B = 0.004213 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.333188 B = 6644.903095 C = 7406.636727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.102 4.102 3 C -0.030 4.030 4 H 0.104 0.896 5 C 0.521 3.479 6 O -0.544 6.544 7 N -0.712 5.712 8 C 0.110 3.890 9 C 0.175 3.825 10 H 0.062 0.938 11 N -0.746 5.746 12 C -0.242 4.242 13 H 0.094 0.906 14 C 0.009 3.991 15 N -0.929 5.929 16 Si 0.877 3.123 17 H -0.285 1.285 18 H -0.277 1.277 19 H -0.292 1.292 20 C -0.108 4.108 21 C -0.149 4.149 22 C -0.139 4.139 23 C -0.199 4.199 24 C 0.034 3.966 25 C -0.083 4.083 26 N -0.367 5.367 27 O 0.094 5.906 28 C -0.012 4.012 29 C -0.091 4.091 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.410 0.590 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.361 0.639 39 H 0.260 0.740 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.050 0.950 44 H 0.088 0.912 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.089 0.911 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.087 0.913 51 H 0.080 0.920 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.519 -16.600 4.752 17.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.140 4.140 3 C -0.052 4.052 4 H 0.122 0.878 5 C 0.307 3.693 6 O -0.423 6.423 7 N -0.363 5.363 8 C -0.014 4.014 9 C 0.065 3.935 10 H 0.080 0.920 11 N -0.389 5.389 12 C -0.371 4.371 13 H 0.112 0.888 14 C -0.188 4.188 15 N -0.577 5.577 16 Si 0.708 3.292 17 H -0.211 1.211 18 H -0.204 1.204 19 H -0.218 1.218 20 C -0.130 4.130 21 C -0.207 4.207 22 C -0.197 4.197 23 C -0.203 4.203 24 C -0.125 4.125 25 C -0.140 4.140 26 N -0.074 5.074 27 O 0.031 5.969 28 C -0.076 4.076 29 C -0.148 4.148 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.246 0.754 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.194 0.806 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.107 0.893 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.108 0.892 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.105 0.895 51 H 0.099 0.901 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.597 -16.527 4.786 18.094 hybrid contribution -1.675 -0.310 -0.804 1.884 sum 3.922 -16.838 3.982 17.741 Atomic orbital electron populations 1.21826 0.95048 1.01872 1.02603 1.21412 0.96439 0.93205 1.02927 1.19682 0.89168 0.98785 0.97531 0.87778 1.20304 0.77009 0.82528 0.89469 1.90603 1.50065 1.64228 1.37393 1.46075 1.64787 1.06175 1.19236 1.21809 0.99241 0.93748 0.86621 1.20525 0.96243 0.89488 0.87275 0.92049 1.42830 1.42040 1.25448 1.28546 1.19044 1.16270 0.96970 1.04839 0.88795 1.24647 0.99179 0.96997 0.97931 1.69688 1.43544 1.23404 1.21023 0.86670 0.83052 0.80678 0.78806 1.21123 1.20370 1.21831 1.21695 0.99337 0.97476 0.94483 1.21936 1.00322 1.00581 0.97842 1.21823 1.01696 0.94040 1.02105 1.20425 0.95987 1.06508 0.97369 1.23458 0.88710 1.00888 0.99425 1.20261 1.01565 0.99819 0.92366 1.73849 1.20757 1.12388 1.00413 1.84807 1.29979 1.53547 1.28590 1.24320 0.84050 1.00662 0.98535 1.20704 1.04981 0.99169 0.89930 0.91670 0.92832 0.92437 0.91378 0.90328 0.75415 0.91113 0.91865 0.80557 0.93010 0.92026 0.93032 0.93398 0.93102 0.89299 0.94960 0.93792 0.89224 0.90405 0.89967 0.89500 0.90144 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.61 37.16 0.36 -1.29 16 2 C -0.10 -1.07 4.91 -26.73 -0.13 -1.20 16 3 C -0.03 -0.35 2.46 -92.93 -0.23 -0.58 16 4 H 0.10 1.18 7.34 -51.93 -0.38 0.80 16 5 C 0.52 7.28 5.69 -10.99 -0.06 7.22 16 6 O -0.54 -8.35 12.87 5.55 0.07 -8.28 16 7 N -0.71 -10.49 5.39 -60.30 -0.32 -10.81 16 8 C 0.11 1.65 4.73 -4.04 -0.02 1.63 16 9 C 0.17 2.96 2.18 -67.93 -0.15 2.81 16 10 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 11 N -0.75 -15.27 4.24 -53.43 -0.23 -15.50 16 12 C -0.24 -6.00 8.05 -15.06 -0.12 -6.12 16 13 H 0.09 2.55 7.62 -52.48 -0.40 2.15 16 14 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 15 N -0.93 -27.27 13.97 55.49 0.78 -26.50 16 16 Si 0.88 20.51 27.74 -169.99 -4.72 15.80 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.20 6.51 56.52 0.37 -5.83 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 C -0.11 -1.73 2.69 -90.62 -0.24 -1.97 16 21 C -0.15 -1.97 8.84 37.16 0.33 -1.64 16 22 C -0.14 -2.47 8.26 37.16 0.31 -2.16 16 23 C -0.20 -2.48 4.97 -104.42 -0.52 -3.00 16 24 C 0.03 0.46 7.33 -82.10 -0.60 -0.14 16 25 C -0.08 -0.93 10.26 36.00 0.37 -0.56 16 26 N -0.37 -5.37 12.07 33.42 0.40 -4.97 16 27 O 0.09 1.28 11.20 17.16 0.19 1.47 16 28 C -0.01 -0.15 7.34 -35.30 -0.26 -0.41 16 29 C -0.09 -0.87 9.03 36.00 0.33 -0.54 16 30 H 0.06 0.81 6.87 -51.93 -0.36 0.45 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.83 6.27 -51.93 -0.33 0.51 16 35 H 0.41 6.27 8.14 -40.82 -0.33 5.93 16 36 H 0.07 1.01 6.71 -51.93 -0.35 0.66 16 37 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.36 7.51 5.65 -40.82 -0.23 7.28 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.62 6.54 -51.93 -0.34 0.28 16 44 H 0.09 1.89 6.01 -51.92 -0.31 1.58 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.08 0.79 7.55 -51.93 -0.39 0.40 16 50 H 0.09 0.66 8.11 -51.93 -0.42 0.24 16 51 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 52 H 0.11 1.28 4.87 -51.93 -0.25 1.03 16 LS Contribution 405.85 15.07 6.12 6.12 Total: -1.00 -29.25 405.85 -7.21 -36.46 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -8.76 Total: 14.02 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -0.74 Total: -7.81 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.63 Total: -57.78 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: 0.26 Total: -6.81 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.72 Total: 15.80 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.25 -7.21 -36.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568465329.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.823 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds