Wall clock time and date at job start Tue Mar 31 2020 20:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47347 * 2 1 4 4 H 1.08999 * 109.47427 * 305.00468 * 3 2 1 5 5 C 1.53003 * 109.47231 * 65.00271 * 3 2 1 6 6 C 1.52999 * 109.47255 * 184.99655 * 3 2 1 7 7 C 1.50699 * 109.47370 * 174.99873 * 6 3 2 8 8 O 1.21288 * 120.00153 * 0.02562 * 7 6 3 9 9 N 1.34776 * 120.00362 * 180.02562 * 7 6 3 10 10 C 1.46503 * 120.00068 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46718 * 180.02562 * 10 9 7 12 12 H 1.08990 * 115.52003 * 29.58079 * 11 10 9 13 13 C 1.53006 * 117.40731 * 244.21485 * 11 10 9 14 14 H 1.09003 * 119.52038 * 4.07691 * 13 11 10 15 15 C 1.54376 * 118.12820 * 160.67107 * 13 11 10 16 16 N 1.48565 * 104.59130 * 87.23144 * 15 13 11 17 17 C 1.46907 * 110.99899 * 200.95940 * 16 15 13 18 18 C 1.50696 * 109.46917 * 189.99966 * 17 16 15 19 19 O 1.21288 * 120.00198 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99689 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99829 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00188 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99620 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00337 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99870 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47276 * 89.99988 * 25 23 21 27 27 H 1.48499 * 109.47570 * 210.00030 * 25 23 21 28 28 H 1.48507 * 109.47408 * 330.00424 * 25 23 21 29 29 C 1.52142 * 104.44326 * 320.24918 * 16 15 13 30 30 C 1.53003 * 117.43889 * 175.00275 * 11 10 9 31 31 H 1.09002 * 119.52639 * 355.86343 * 30 11 10 32 32 H 1.08999 * 109.47271 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46802 * 299.99979 * 1 2 3 34 34 H 1.08997 * 109.46910 * 59.99343 * 1 2 3 35 35 H 1.08994 * 109.46980 * 239.99833 * 2 1 3 36 36 H 1.09004 * 109.47270 * 120.00073 * 2 1 3 37 37 H 1.09006 * 109.46643 * 299.99721 * 5 3 2 38 38 H 1.08998 * 109.47495 * 59.99850 * 5 3 2 39 39 H 1.08999 * 109.47274 * 180.02562 * 5 3 2 40 40 H 1.09000 * 109.46985 * 55.00498 * 6 3 2 41 41 H 1.08999 * 109.47799 * 295.00413 * 6 3 2 42 42 H 0.97002 * 119.99733 * 0.02562 * 9 7 6 43 43 H 1.09000 * 109.47224 * 60.00365 * 10 9 7 44 44 H 1.08992 * 109.47398 * 299.99853 * 10 9 7 45 45 H 1.08999 * 110.41445 * 206.00579 * 15 13 11 46 46 H 1.08994 * 110.41205 * 328.45896 * 15 13 11 47 47 H 1.09001 * 109.46903 * 310.00160 * 17 16 15 48 48 H 1.08994 * 109.46880 * 69.99933 * 17 16 15 49 49 H 0.96995 * 120.00421 * 0.02562 * 20 18 17 50 50 H 0.97004 * 119.99606 * 179.97438 * 24 23 21 51 51 H 1.08997 * 110.22960 * 281.87154 * 29 16 15 52 52 H 1.09003 * 112.21772 * 158.30499 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6354 2.1265 1.3074 6 6 3.5649 1.4442 -0.1256 7 6 4.0571 2.8632 -0.2492 8 8 3.2662 3.7827 -0.2374 9 7 5.3762 3.1106 -0.3728 10 6 5.8547 4.4901 -0.4923 11 6 7.3794 4.4918 -0.6194 12 1 7.8122 3.6104 -1.0925 13 6 8.1792 5.1527 0.5052 14 1 7.6571 5.5366 1.3817 15 6 9.6721 4.7871 0.6486 16 7 10.3777 5.7340 -0.2529 17 6 11.7064 5.2237 -0.6166 18 6 12.4840 6.3051 -1.3215 19 8 11.9808 7.3935 -1.5035 20 7 13.7387 6.0626 -1.7498 21 6 14.4460 7.0462 -2.3916 22 1 13.9980 8.0154 -2.5536 23 6 15.7394 6.7961 -2.8335 24 7 16.2844 5.6166 -2.6368 25 14 16.7034 8.1364 -3.7073 26 1 17.4640 8.9301 -2.7089 27 1 17.6483 7.5181 -4.6717 28 1 15.7644 9.0268 -4.4359 29 6 9.4836 5.8268 -1.4804 30 6 8.0644 5.8362 -0.8729 31 1 7.4569 6.7288 -1.0224 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 1.8933 -0.5138 -0.8899 36 1 1.8934 -0.5139 0.8900 37 1 0.5490 2.1253 1.3969 38 1 2.0700 1.5875 2.1492 39 1 1.9983 3.1543 1.3072 40 1 3.8571 0.8800 -1.0113 41 1 4.0030 0.9835 0.7597 42 1 6.0087 2.3753 -0.3826 43 1 5.5630 5.0540 0.3937 44 1 5.4163 4.9514 -1.3772 45 1 10.0005 4.9266 1.6785 46 1 9.8441 3.7591 0.3297 47 1 12.2391 4.9221 0.2852 48 1 11.5969 4.3646 -1.2784 49 1 14.1410 5.1921 -1.6046 50 1 17.1872 5.4420 -2.9457 51 1 9.6204 4.9501 -2.1134 52 1 9.6593 6.7393 -2.0502 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570917355.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:13 Heat of formation + Delta-G solvation = -52.804108 kcal Electronic energy + Delta-G solvation = -28147.619789 eV Core-core repulsion = 24147.397913 eV Total energy + Delta-G solvation = -4000.221876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.39846 -39.75639 -37.99853 -36.85631 -35.37779 -34.04300 -33.45961 -31.27924 -31.17060 -29.07171 -28.33996 -27.78103 -26.18020 -24.58381 -24.00861 -21.86355 -21.21979 -20.55756 -20.23144 -19.96215 -19.09993 -17.83436 -17.39619 -16.51732 -16.10982 -16.01845 -15.48259 -15.33472 -14.95856 -14.68874 -14.52886 -14.34367 -14.14320 -13.98065 -13.60966 -13.44044 -13.27865 -12.95981 -12.88610 -12.71040 -12.36045 -12.29932 -12.12298 -11.90584 -11.74044 -11.54654 -11.43828 -11.32016 -11.24198 -11.11725 -11.02529 -10.94727 -10.88030 -10.39093 -10.27854 -10.21450 -10.08932 -9.85300 -9.48555 -9.30975 -8.50355 -8.02562 -7.94142 -6.40852 -3.81524 2.35607 2.79465 3.18417 3.26906 3.32623 3.41964 3.90046 3.97878 4.20184 4.28682 4.32024 4.34162 4.46636 4.54463 4.74493 4.85698 4.87708 4.91475 4.99193 5.05281 5.12165 5.19839 5.23946 5.25539 5.25884 5.29700 5.35564 5.38094 5.46491 5.55780 5.58706 5.62722 5.67101 5.67989 5.75460 5.81054 5.82984 5.85883 6.01472 6.05106 6.06724 6.11845 6.21763 6.27833 6.37678 6.92284 7.16421 7.18046 7.56029 7.93359 8.07354 8.63262 9.19490 9.55807 10.08075 10.77036 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034936 B = 0.001449 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.276670 B =19319.480373 C =19518.564728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.076 4.076 4 H 0.078 0.922 5 C -0.155 4.155 6 C -0.138 4.138 7 C 0.511 3.489 8 O -0.537 6.537 9 N -0.729 5.729 10 C 0.153 3.847 11 C -0.145 4.145 12 H 0.106 0.894 13 C -0.152 4.152 14 H 0.118 0.882 15 C 0.059 3.941 16 N -0.483 5.483 17 C 0.032 3.968 18 C 0.446 3.554 19 O -0.576 6.576 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.068 3.932 30 C -0.144 4.144 31 H 0.119 0.881 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.401 0.599 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.042 0.958 47 H 0.089 0.911 48 H 0.050 0.950 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.043 0.957 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.978 -14.653 6.607 29.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.096 0.904 5 C -0.212 4.212 6 C -0.178 4.178 7 C 0.298 3.702 8 O -0.414 6.414 9 N -0.382 5.382 10 C 0.030 3.970 11 C -0.164 4.164 12 H 0.124 0.876 13 C -0.171 4.171 14 H 0.136 0.864 15 C -0.069 4.069 16 N -0.208 5.208 17 C -0.100 4.100 18 C 0.231 3.769 19 O -0.459 6.459 20 N -0.204 5.204 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.059 4.059 30 C -0.163 4.163 31 H 0.137 0.863 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.235 0.765 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.060 0.940 47 H 0.107 0.893 48 H 0.068 0.932 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.061 0.939 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -25.574 -12.766 6.694 29.356 hybrid contribution 1.265 -1.165 -0.703 1.858 sum -24.308 -13.931 5.991 28.651 Atomic orbital electron populations 1.21808 0.95684 1.01484 1.02134 1.21596 0.96258 0.96032 1.01917 1.20922 0.92604 0.96053 0.99955 0.90386 1.21998 1.01260 1.02096 0.95818 1.21782 0.97972 0.93808 1.04251 1.20743 0.81901 0.91816 0.75738 1.90686 1.54621 1.46704 1.49433 1.46066 1.07739 1.09187 1.75169 1.20808 0.90923 0.82912 1.02352 1.22677 0.93025 0.97739 1.02993 0.87648 1.23566 0.95829 1.04640 0.93061 0.86377 1.22643 0.90991 0.94316 0.98912 1.66252 1.00704 1.42381 1.11426 1.22054 0.91297 0.96303 1.00306 1.19687 0.83214 0.89280 0.84733 1.90514 1.69674 1.25208 1.60511 1.41860 1.12073 1.15074 1.51348 1.19700 0.95727 0.95161 1.32158 0.87940 1.25241 0.97096 0.97432 0.98157 1.69615 1.16055 1.21416 1.47395 0.85869 0.79219 0.80271 0.78995 1.20411 1.20970 1.19440 1.23303 0.88127 1.02518 0.91946 1.23479 0.97914 0.95411 0.99544 0.86330 0.92865 0.92371 0.92712 0.92017 0.91949 0.92687 0.93416 0.90770 0.88906 0.88868 0.76459 0.91075 0.90814 0.89548 0.93995 0.89325 0.93240 0.77564 0.91933 0.93853 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.67 37.16 0.36 -0.43 16 2 C -0.12 -0.61 5.40 -26.73 -0.14 -0.76 16 3 C -0.08 -0.51 2.04 -90.62 -0.18 -0.69 16 4 H 0.08 0.64 7.96 -51.93 -0.41 0.23 16 5 C -0.15 -1.16 8.69 37.16 0.32 -0.84 16 6 C -0.14 -0.79 5.17 -27.88 -0.14 -0.93 16 7 C 0.51 4.51 7.55 -10.99 -0.08 4.42 16 8 O -0.54 -6.80 13.97 5.55 0.08 -6.72 16 9 N -0.73 -5.39 5.56 -60.29 -0.33 -5.73 16 10 C 0.15 1.35 5.95 -4.04 -0.02 1.33 16 11 C -0.15 -1.32 5.38 -90.61 -0.49 -1.81 16 12 H 0.11 0.90 8.04 -51.93 -0.42 0.48 16 13 C -0.15 -1.62 6.73 -89.24 -0.60 -2.22 16 14 H 0.12 1.17 8.12 -51.93 -0.42 0.75 16 15 C 0.06 0.73 6.27 -2.18 -0.01 0.71 16 16 N -0.48 -7.97 5.03 -228.13 -1.15 -9.12 16 17 C 0.03 0.57 5.32 -4.97 -0.03 0.55 16 18 C 0.45 10.53 7.63 -10.99 -0.08 10.44 16 19 O -0.58 -15.62 14.90 5.55 0.08 -15.54 16 20 N -0.57 -14.33 5.29 -10.97 -0.06 -14.39 16 21 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 25 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 29 C 0.07 1.03 5.91 -0.11 0.00 1.03 16 30 C -0.14 -1.71 6.75 -89.23 -0.60 -2.31 16 31 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.31 6.57 -51.93 -0.34 -0.04 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 0.38 6.57 -51.93 -0.34 0.04 16 38 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.74 5.95 -51.93 -0.31 0.43 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.40 1.98 8.40 -40.82 -0.34 1.64 16 43 H 0.07 0.69 7.94 -51.93 -0.41 0.28 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.04 0.46 8.00 -51.93 -0.42 0.05 16 47 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 48 H 0.05 0.79 7.80 -51.93 -0.41 0.38 16 49 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 50 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 51 H 0.04 0.63 7.80 -51.93 -0.41 0.22 16 52 H 0.10 1.86 7.41 -51.93 -0.38 1.48 16 LS Contribution 415.72 15.07 6.26 6.26 Total: -1.00 -33.08 415.72 -10.46 -43.53 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -9.09 Total: 8.92 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.95 Total: 0.53 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.82 Total: -53.02 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.16 Total: -22.26 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.08 -10.46 -43.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570917355.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.270 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds