Wall clock time and date at job start Tue Mar 31 2020 20:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47347 * 2 1 4 4 H 1.08999 * 109.47427 * 305.00468 * 3 2 1 5 5 C 1.53003 * 109.47231 * 65.00271 * 3 2 1 6 6 C 1.52999 * 109.47255 * 184.99655 * 3 2 1 7 7 C 1.50699 * 109.47370 * 174.99873 * 6 3 2 8 8 O 1.21288 * 120.00153 * 0.02562 * 7 6 3 9 9 N 1.34776 * 120.00362 * 180.02562 * 7 6 3 10 10 C 1.46503 * 120.00068 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46718 * 180.02562 * 10 9 7 12 12 H 1.08990 * 115.52003 * 29.58079 * 11 10 9 13 13 C 1.53006 * 117.40731 * 244.21485 * 11 10 9 14 14 H 1.09003 * 119.52038 * 4.07691 * 13 11 10 15 15 C 1.54376 * 118.12820 * 160.67107 * 13 11 10 16 16 N 1.48565 * 104.59130 * 87.23144 * 15 13 11 17 17 C 1.46907 * 110.99899 * 200.95940 * 16 15 13 18 18 C 1.50696 * 109.46917 * 189.99966 * 17 16 15 19 19 O 1.21288 * 120.00198 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99689 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99829 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00188 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99620 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00337 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99870 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47276 * 89.99988 * 25 23 21 27 27 H 1.48499 * 109.47570 * 210.00030 * 25 23 21 28 28 H 1.48507 * 109.47408 * 330.00424 * 25 23 21 29 29 C 1.52142 * 104.44326 * 320.24918 * 16 15 13 30 30 C 1.53003 * 117.43889 * 175.00275 * 11 10 9 31 31 H 1.09002 * 119.52639 * 355.86343 * 30 11 10 32 32 H 1.08999 * 109.47271 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46802 * 299.99979 * 1 2 3 34 34 H 1.08997 * 109.46910 * 59.99343 * 1 2 3 35 35 H 1.08994 * 109.46980 * 239.99833 * 2 1 3 36 36 H 1.09004 * 109.47270 * 120.00073 * 2 1 3 37 37 H 1.09006 * 109.46643 * 299.99721 * 5 3 2 38 38 H 1.08998 * 109.47495 * 59.99850 * 5 3 2 39 39 H 1.08999 * 109.47274 * 180.02562 * 5 3 2 40 40 H 1.09000 * 109.46985 * 55.00498 * 6 3 2 41 41 H 1.08999 * 109.47799 * 295.00413 * 6 3 2 42 42 H 0.97002 * 119.99733 * 0.02562 * 9 7 6 43 43 H 1.09000 * 109.47224 * 60.00365 * 10 9 7 44 44 H 1.08992 * 109.47398 * 299.99853 * 10 9 7 45 45 H 1.08999 * 110.41445 * 206.00579 * 15 13 11 46 46 H 1.08994 * 110.41205 * 328.45896 * 15 13 11 47 47 H 1.09001 * 109.46903 * 310.00160 * 17 16 15 48 48 H 1.08994 * 109.46880 * 69.99933 * 17 16 15 49 49 H 0.96995 * 120.00421 * 0.02562 * 20 18 17 50 50 H 0.97004 * 119.99606 * 179.97438 * 24 23 21 51 51 H 1.08997 * 110.22960 * 281.87154 * 29 16 15 52 52 H 1.09003 * 112.21772 * 158.30499 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6354 2.1265 1.3074 6 6 3.5649 1.4442 -0.1256 7 6 4.0571 2.8632 -0.2492 8 8 3.2662 3.7827 -0.2374 9 7 5.3762 3.1106 -0.3728 10 6 5.8547 4.4901 -0.4923 11 6 7.3794 4.4918 -0.6194 12 1 7.8122 3.6104 -1.0925 13 6 8.1792 5.1527 0.5052 14 1 7.6571 5.5366 1.3817 15 6 9.6721 4.7871 0.6486 16 7 10.3777 5.7340 -0.2529 17 6 11.7064 5.2237 -0.6166 18 6 12.4840 6.3051 -1.3215 19 8 11.9808 7.3935 -1.5035 20 7 13.7387 6.0626 -1.7498 21 6 14.4460 7.0462 -2.3916 22 1 13.9980 8.0154 -2.5536 23 6 15.7394 6.7961 -2.8335 24 7 16.2844 5.6166 -2.6368 25 14 16.7034 8.1364 -3.7073 26 1 17.4640 8.9301 -2.7089 27 1 17.6483 7.5181 -4.6717 28 1 15.7644 9.0268 -4.4359 29 6 9.4836 5.8268 -1.4804 30 6 8.0644 5.8362 -0.8729 31 1 7.4569 6.7288 -1.0224 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 1.8933 -0.5138 -0.8899 36 1 1.8934 -0.5139 0.8900 37 1 0.5490 2.1253 1.3969 38 1 2.0700 1.5875 2.1492 39 1 1.9983 3.1543 1.3072 40 1 3.8571 0.8800 -1.0113 41 1 4.0030 0.9835 0.7597 42 1 6.0087 2.3753 -0.3826 43 1 5.5630 5.0540 0.3937 44 1 5.4163 4.9514 -1.3772 45 1 10.0005 4.9266 1.6785 46 1 9.8441 3.7591 0.3297 47 1 12.2391 4.9221 0.2852 48 1 11.5969 4.3646 -1.2784 49 1 14.1410 5.1921 -1.6046 50 1 17.1872 5.4420 -2.9457 51 1 9.6204 4.9501 -2.1134 52 1 9.6593 6.7393 -2.0502 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570917355.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:12 Heat of formation + Delta-G solvation = -76.011395 kcal Electronic energy + Delta-G solvation = -28148.626133 eV Core-core repulsion = 24147.397913 eV Total energy + Delta-G solvation = -4001.228219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.24882 -40.68639 -39.74996 -37.40767 -36.37793 -35.84400 -34.61084 -33.23972 -31.73019 -30.01945 -29.38307 -28.70325 -27.33906 -26.08049 -24.68413 -23.02326 -21.96308 -21.30627 -21.14813 -20.86700 -20.57928 -19.84477 -18.07313 -17.70343 -17.27001 -16.78681 -16.60223 -16.47132 -16.15273 -15.97935 -15.70284 -15.32364 -15.22811 -14.85894 -14.77573 -14.55875 -14.31555 -13.97433 -13.85988 -13.56827 -13.49361 -13.36314 -13.15513 -12.96096 -12.78332 -12.69879 -12.55418 -12.42011 -12.26477 -12.16318 -12.14970 -12.09290 -11.74247 -11.52693 -11.48794 -11.37961 -11.11066 -10.99119 -10.61210 -10.30851 -10.02186 -9.99602 -9.32836 -8.46056 -5.94493 1.37933 1.41605 1.54067 1.70722 2.06993 2.13722 2.28628 2.55764 2.82280 3.20813 3.32917 3.41606 3.65834 3.79342 3.87403 4.01744 4.02737 4.11837 4.13903 4.22284 4.28977 4.34105 4.42207 4.47305 4.49672 4.55586 4.58085 4.65395 4.69221 4.70147 4.76330 4.76633 4.85844 4.94100 4.94813 5.06059 5.16541 5.18344 5.20438 5.25125 5.27070 5.33299 5.41366 5.46297 5.56862 5.62112 5.72805 5.89279 6.09636 6.60837 6.62127 7.14289 7.32592 7.57910 8.14566 8.71404 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034936 B = 0.001449 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.276670 B =19319.480373 C =19518.564728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.076 4.076 4 H 0.055 0.945 5 C -0.152 4.152 6 C -0.131 4.131 7 C 0.506 3.494 8 O -0.582 6.582 9 N -0.718 5.718 10 C 0.158 3.842 11 C -0.110 4.110 12 H 0.122 0.878 13 C -0.145 4.145 14 H 0.128 0.872 15 C 0.061 3.939 16 N -0.513 5.513 17 C 0.046 3.954 18 C 0.441 3.559 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.274 1.274 29 C 0.068 3.932 30 C -0.163 4.163 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.417 0.583 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.064 0.936 47 H 0.110 0.890 48 H 0.073 0.927 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.052 0.948 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.013 -17.357 7.251 31.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.095 4.095 4 H 0.074 0.926 5 C -0.209 4.209 6 C -0.171 4.171 7 C 0.295 3.705 8 O -0.463 6.463 9 N -0.371 5.371 10 C 0.034 3.966 11 C -0.128 4.128 12 H 0.140 0.860 13 C -0.163 4.163 14 H 0.146 0.854 15 C -0.066 4.066 16 N -0.238 5.238 17 C -0.085 4.085 18 C 0.228 3.772 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.463 4.463 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.199 1.199 29 C -0.059 4.059 30 C -0.182 4.182 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.254 0.746 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.113 0.887 46 H 0.082 0.918 47 H 0.128 0.872 48 H 0.091 0.909 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.070 0.930 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.588 -15.526 7.353 30.820 hybrid contribution 1.220 -0.296 -0.880 1.532 sum -24.369 -15.822 6.473 29.767 Atomic orbital electron populations 1.21831 0.96046 1.01870 1.01629 1.21560 0.95943 0.94832 1.02910 1.20895 0.93471 0.96748 0.98431 0.92605 1.21951 1.01266 1.00718 0.96969 1.21816 0.97051 0.91845 1.06372 1.21354 0.81785 0.92712 0.74696 1.90680 1.55792 1.48301 1.51485 1.45952 1.07787 1.09005 1.74384 1.20635 0.90570 0.83791 1.01584 1.22564 0.92778 0.96480 1.01026 0.85978 1.23623 0.95432 1.04314 0.92964 0.85381 1.22709 0.91178 0.94460 0.98285 1.66175 1.00620 1.44592 1.12450 1.21891 0.91547 0.94276 1.00820 1.20807 0.82708 0.90127 0.83514 1.90487 1.70447 1.27563 1.61822 1.41922 1.12783 1.14809 1.51773 1.19644 0.96977 0.95199 1.34470 0.90537 1.25988 0.97297 0.99603 0.98190 1.69668 1.16532 1.22489 1.47440 0.84959 0.77770 0.77685 0.78106 1.19701 1.19439 1.19914 1.23129 0.90106 1.00825 0.91836 1.23316 0.96758 0.97309 1.00864 0.86658 0.91994 0.92788 0.93398 0.90987 0.90875 0.92745 0.92227 0.93518 0.86582 0.86558 0.74622 0.91821 0.91885 0.88727 0.91819 0.87183 0.90941 0.77017 0.91325 0.93020 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.67 71.98 0.70 -0.72 16 2 C -0.12 -0.91 5.40 30.59 0.17 -0.75 16 3 C -0.08 -0.92 2.04 -10.79 -0.02 -0.94 16 4 H 0.06 0.92 7.96 -2.39 -0.02 0.90 16 5 C -0.15 -2.20 8.69 71.98 0.63 -1.57 16 6 C -0.13 -1.15 5.17 29.85 0.15 -0.99 16 7 C 0.51 8.15 7.55 87.66 0.66 8.81 16 8 O -0.58 -14.79 13.97 -3.05 -0.04 -14.84 16 9 N -0.72 -8.87 5.56 -463.05 -2.57 -11.44 16 10 C 0.16 2.54 5.95 86.38 0.51 3.05 16 11 C -0.11 -1.72 5.38 -10.79 -0.06 -1.78 16 12 H 0.12 1.60 8.04 -2.39 -0.02 1.58 16 13 C -0.14 -2.74 6.73 -9.90 -0.07 -2.81 16 14 H 0.13 2.22 8.12 -2.39 -0.02 2.20 16 15 C 0.06 1.32 6.27 86.45 0.54 1.86 16 16 N -0.51 -16.45 5.03 -875.67 -4.40 -20.86 16 17 C 0.05 1.58 5.32 85.55 0.46 2.04 16 18 C 0.44 21.21 7.63 87.66 0.67 21.88 16 19 O -0.62 -34.87 14.90 -3.05 -0.05 -34.91 16 20 N -0.58 -29.64 5.29 -306.99 -1.62 -31.26 16 21 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 22 H 0.08 4.70 7.16 -2.91 -0.02 4.67 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 24 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 25 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 29 C 0.07 2.08 5.91 85.73 0.51 2.58 16 30 C -0.16 -3.75 6.75 -9.90 -0.07 -3.82 16 31 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.05 0.52 6.57 -2.39 -0.02 0.51 16 34 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 37 H 0.05 0.76 6.57 -2.38 -0.02 0.74 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.05 0.95 5.95 -2.39 -0.01 0.94 16 40 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.42 2.58 8.40 -92.71 -0.78 1.80 16 43 H 0.06 1.16 7.94 -2.39 -0.02 1.14 16 44 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.06 1.14 8.00 -2.39 -0.02 1.12 16 47 H 0.11 3.29 8.08 -2.39 -0.02 3.27 16 48 H 0.07 2.15 7.80 -2.39 -0.02 2.13 16 49 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 50 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 51 H 0.05 1.45 7.80 -2.39 -0.02 1.43 16 52 H 0.06 2.38 7.41 -2.39 -0.02 2.37 16 Total: -1.00 -74.83 415.72 -0.91 -75.75 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -0.59 Total: 33.19 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 6.06 Total: 8.46 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -8.31 Total: -112.81 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.09 Total: -49.75 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -74.83 -0.91 -75.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570917355.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.266 kcal (2) G-P(sol) polarization free energy of solvation -74.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds