Wall clock time and date at job start Tue Mar 31 2020 20:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46967 * 2 1 4 4 H 1.09005 * 109.46899 * 55.00216 * 3 2 1 5 5 C 1.52996 * 109.47549 * 295.00176 * 3 2 1 6 6 C 1.52999 * 109.47162 * 174.99760 * 3 2 1 7 7 C 1.50699 * 109.47370 * 185.00106 * 6 3 2 8 8 O 1.21288 * 120.00153 * 0.02562 * 7 6 3 9 9 N 1.34776 * 120.00362 * 180.02562 * 7 6 3 10 10 C 1.46503 * 120.00068 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46718 * 180.02562 * 10 9 7 12 12 H 1.08990 * 115.52003 * 29.58079 * 11 10 9 13 13 C 1.53006 * 117.40731 * 244.21485 * 11 10 9 14 14 H 1.09003 * 119.52038 * 4.07691 * 13 11 10 15 15 C 1.54376 * 118.12820 * 160.67107 * 13 11 10 16 16 N 1.48565 * 104.59130 * 87.23144 * 15 13 11 17 17 C 1.46907 * 110.99899 * 200.95940 * 16 15 13 18 18 C 1.50696 * 109.46917 * 189.99966 * 17 16 15 19 19 O 1.21288 * 120.00198 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99689 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99829 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00188 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99620 * 180.02562 * 21 20 18 24 24 N 1.31419 * 119.99737 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00562 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.46858 * 89.99664 * 25 23 21 27 27 H 1.48496 * 109.47189 * 210.00053 * 25 23 21 28 28 H 1.48503 * 109.46655 * 329.99924 * 25 23 21 29 29 C 1.52142 * 104.44326 * 320.24918 * 16 15 13 30 30 C 1.53003 * 117.43889 * 175.00275 * 11 10 9 31 31 H 1.09002 * 119.52639 * 355.86343 * 30 11 10 32 32 H 1.08999 * 109.46473 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47158 * 299.99407 * 1 2 3 34 34 H 1.09003 * 109.47246 * 59.99788 * 1 2 3 35 35 H 1.08998 * 109.47158 * 240.00593 * 2 1 3 36 36 H 1.08995 * 109.47457 * 120.00518 * 2 1 3 37 37 H 1.09007 * 109.46781 * 60.00118 * 5 3 2 38 38 H 1.08999 * 109.47286 * 179.97438 * 5 3 2 39 39 H 1.08991 * 109.47220 * 299.99929 * 5 3 2 40 40 H 1.09000 * 109.46985 * 65.00731 * 6 3 2 41 41 H 1.08999 * 109.47799 * 305.00646 * 6 3 2 42 42 H 0.97002 * 119.99733 * 0.02562 * 9 7 6 43 43 H 1.09000 * 109.47224 * 60.00365 * 10 9 7 44 44 H 1.08992 * 109.47398 * 299.99853 * 10 9 7 45 45 H 1.08999 * 110.41445 * 206.00579 * 15 13 11 46 46 H 1.08994 * 110.41205 * 328.45896 * 15 13 11 47 47 H 1.09001 * 109.46903 * 310.00160 * 17 16 15 48 48 H 1.08994 * 109.46880 * 69.99933 * 17 16 15 49 49 H 0.96995 * 120.00421 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99546 * 180.02562 * 24 23 21 51 51 H 1.08997 * 110.22960 * 281.87154 * 29 16 15 52 52 H 1.09003 * 112.21772 * 158.30499 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1258 7 6 4.0569 2.8634 0.2493 8 8 3.2659 3.7828 0.2384 9 7 5.3761 3.1109 0.3720 10 6 5.8544 4.4904 0.4927 11 6 7.3794 4.4923 0.6170 12 1 7.8919 3.6676 0.1220 13 6 7.9786 5.0109 1.9258 14 1 7.3169 5.2956 2.7439 15 6 9.4317 4.6170 2.2675 16 7 10.2656 5.6552 1.6089 17 6 11.6407 5.1779 1.4101 18 6 12.5125 6.3262 0.9715 19 8 12.0352 7.4331 0.8372 20 7 13.8225 6.1231 0.7285 21 6 14.6155 7.1677 0.3289 22 1 14.1906 8.1534 0.2093 23 6 15.9660 6.9581 0.0778 24 7 16.7263 7.9595 -0.3047 25 14 16.7009 5.2532 0.2840 26 1 16.6020 4.5131 -0.9997 27 1 18.1277 5.3735 0.6775 28 1 15.9570 4.5178 1.3380 29 6 9.5829 5.8980 0.2711 30 6 8.0835 5.8505 0.6360 31 1 7.5000 6.7601 0.4939 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5137 -0.8900 36 1 1.8934 -0.5139 0.8899 37 1 0.5488 2.1253 -1.3968 38 1 1.9981 3.1544 -1.3070 39 1 2.0698 1.5877 -2.1491 40 1 4.0029 0.9838 -0.7596 41 1 3.8571 0.8801 1.0113 42 1 6.0087 2.3757 0.3804 43 1 5.4167 4.9506 1.3785 44 1 5.5617 5.0552 -0.3924 45 1 9.5864 4.6332 3.3463 46 1 9.6632 3.6313 1.8640 47 1 12.0221 4.7689 2.3457 48 1 11.6489 4.4023 0.6444 49 1 14.2041 5.2378 0.8355 50 1 17.6689 7.8131 -0.4803 51 1 9.8294 5.0993 -0.4283 52 1 9.8403 6.8687 -0.1529 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570917357.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:16 Heat of formation + Delta-G solvation = -45.508339 kcal Electronic energy + Delta-G solvation = -28202.767250 eV Core-core repulsion = 24202.861742 eV Total energy + Delta-G solvation = -3999.905508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.44014 -39.81837 -38.18968 -36.88387 -35.43446 -34.09588 -33.53868 -31.65481 -31.26456 -29.15474 -28.40870 -27.87387 -26.27764 -24.54257 -23.95392 -21.85264 -21.25443 -20.60520 -20.27839 -19.99616 -19.31233 -18.23888 -17.42997 -16.57637 -16.17433 -15.93159 -15.60307 -15.28945 -15.19554 -14.80723 -14.69045 -14.33041 -14.21105 -13.94714 -13.57367 -13.42657 -13.25125 -13.00655 -12.91403 -12.75531 -12.47324 -12.33174 -12.28269 -12.15292 -11.91432 -11.76147 -11.53013 -11.41528 -11.25555 -11.23579 -11.05246 -10.99214 -10.96369 -10.60475 -10.29283 -10.15700 -9.97498 -9.90517 -9.55568 -9.33800 -8.62979 -8.18452 -8.11803 -6.30660 -3.82010 2.32960 2.76173 3.01683 3.05511 3.14157 3.36755 3.74073 3.88879 4.10017 4.20321 4.28571 4.31831 4.44315 4.46704 4.70273 4.75040 4.83185 4.87057 4.89088 5.02908 5.05483 5.10724 5.16971 5.19640 5.24073 5.27751 5.30514 5.35773 5.42975 5.49026 5.54329 5.56992 5.60266 5.65230 5.66077 5.68869 5.77496 5.81444 5.91792 5.98888 6.00420 6.02777 6.08305 6.19395 6.31770 6.82566 7.04272 7.14283 7.58857 7.90623 8.14987 8.61087 8.96079 9.43085 9.84690 10.82611 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028552 B = 0.001521 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.424940 B =18400.898041 C =18775.848166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.076 4.076 4 H 0.078 0.922 5 C -0.155 4.155 6 C -0.138 4.138 7 C 0.511 3.489 8 O -0.537 6.537 9 N -0.730 5.730 10 C 0.153 3.847 11 C -0.145 4.145 12 H 0.105 0.895 13 C -0.153 4.153 14 H 0.119 0.881 15 C 0.060 3.940 16 N -0.484 5.484 17 C 0.030 3.970 18 C 0.455 3.545 19 O -0.557 6.557 20 N -0.593 5.593 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.067 3.933 30 C -0.144 4.144 31 H 0.120 0.880 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.401 0.599 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.042 0.958 47 H 0.090 0.910 48 H 0.051 0.949 49 H 0.369 0.631 50 H 0.273 0.727 51 H 0.044 0.956 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.492 -20.163 1.555 33.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.096 0.904 5 C -0.212 4.212 6 C -0.178 4.178 7 C 0.298 3.702 8 O -0.414 6.414 9 N -0.382 5.382 10 C 0.030 3.970 11 C -0.164 4.164 12 H 0.123 0.877 13 C -0.171 4.171 14 H 0.137 0.863 15 C -0.068 4.068 16 N -0.208 5.208 17 C -0.103 4.103 18 C 0.240 3.760 19 O -0.438 6.438 20 N -0.233 5.233 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.060 4.060 30 C -0.163 4.163 31 H 0.138 0.862 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.235 0.765 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.060 0.940 47 H 0.108 0.892 48 H 0.069 0.931 49 H 0.202 0.798 50 H 0.084 0.916 51 H 0.062 0.938 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -27.099 -18.135 1.728 32.652 hybrid contribution 1.309 -2.459 -0.288 2.801 sum -25.790 -20.594 1.440 33.035 Atomic orbital electron populations 1.21808 0.95670 1.01493 1.02145 1.21596 0.96273 0.96025 1.01905 1.20923 0.92585 0.96059 0.99967 0.90382 1.21998 1.01287 1.02101 0.95809 1.21782 0.97995 0.93795 1.04234 1.20744 0.81899 0.91821 0.75737 1.90689 1.54606 1.46703 1.49382 1.46063 1.07749 1.09176 1.75202 1.20810 0.90850 0.82929 1.02431 1.22675 0.93933 0.98720 1.01044 0.87665 1.23565 0.97435 1.04716 0.91418 0.86311 1.22642 0.90343 0.93355 1.00484 1.66249 1.00045 1.37039 1.17453 1.22088 0.90460 0.96367 1.01341 1.19584 0.82553 0.89788 0.84082 1.90557 1.73231 1.24922 1.55080 1.42210 1.08145 1.10713 1.62261 1.19430 0.90253 0.91714 1.41861 0.86283 1.25026 0.95937 0.97649 0.97527 1.69625 1.06629 1.30555 1.45439 0.86680 0.79833 0.84191 0.78718 1.19712 1.20177 1.19535 1.23325 0.89350 1.03042 0.90267 1.23477 0.96854 0.94295 1.01687 0.86231 0.92862 0.92702 0.92363 0.91953 0.92026 0.92664 0.90761 0.93412 0.88890 0.88902 0.76485 0.91046 0.90778 0.89485 0.93991 0.89197 0.93122 0.79801 0.91649 0.93787 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.67 37.16 0.36 -0.41 16 2 C -0.12 -0.59 5.40 -26.73 -0.14 -0.73 16 3 C -0.08 -0.49 2.04 -90.62 -0.18 -0.68 16 4 H 0.08 0.62 7.96 -51.93 -0.41 0.21 16 5 C -0.15 -1.15 8.69 37.16 0.32 -0.82 16 6 C -0.14 -0.75 5.17 -27.88 -0.14 -0.90 16 7 C 0.51 4.36 7.55 -10.99 -0.08 4.28 16 8 O -0.54 -6.67 13.97 5.55 0.08 -6.59 16 9 N -0.73 -5.14 5.56 -60.29 -0.33 -5.47 16 10 C 0.15 1.30 5.95 -4.04 -0.02 1.27 16 11 C -0.14 -1.24 5.38 -90.61 -0.49 -1.73 16 12 H 0.11 0.83 8.04 -51.93 -0.42 0.42 16 13 C -0.15 -1.54 6.73 -89.24 -0.60 -2.14 16 14 H 0.12 1.12 8.12 -51.93 -0.42 0.70 16 15 C 0.06 0.68 6.27 -2.18 -0.01 0.67 16 16 N -0.48 -7.59 5.03 -228.13 -1.15 -8.73 16 17 C 0.03 0.49 5.32 -4.97 -0.03 0.46 16 18 C 0.45 10.28 7.63 -10.99 -0.08 10.20 16 19 O -0.56 -14.91 14.90 5.55 0.08 -14.82 16 20 N -0.59 -14.07 5.09 -10.97 -0.06 -14.13 16 21 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 22 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 25 Si 0.88 19.25 27.74 -169.99 -4.71 14.53 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 29 C 0.07 0.97 5.91 -0.11 0.00 0.97 16 30 C -0.14 -1.63 6.75 -89.23 -0.60 -2.23 16 31 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.30 6.57 -51.93 -0.34 -0.04 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.05 0.38 6.57 -51.93 -0.34 0.04 16 38 H 0.07 0.73 5.95 -51.93 -0.31 0.42 16 39 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.40 1.82 8.40 -40.82 -0.34 1.48 16 43 H 0.07 0.67 7.94 -51.93 -0.41 0.26 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.04 0.42 8.00 -51.93 -0.42 0.01 16 47 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16 48 H 0.05 0.73 7.80 -51.93 -0.41 0.32 16 49 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 50 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 51 H 0.04 0.60 7.80 -51.93 -0.41 0.19 16 52 H 0.10 1.83 7.41 -51.93 -0.38 1.44 16 LS Contribution 412.60 15.07 6.22 6.22 Total: -1.00 -34.39 412.60 -10.11 -44.50 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -9.05 Total: 8.96 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.96 Total: 0.52 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.76 Total: -53.32 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: 0.16 Total: -21.41 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.39 -10.11 -44.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570917357.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.005 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds