Wall clock time and date at job start Tue Mar 31 2020 20:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46967 * 2 1 4 4 H 1.09005 * 109.46899 * 55.00216 * 3 2 1 5 5 C 1.52996 * 109.47549 * 295.00176 * 3 2 1 6 6 C 1.52999 * 109.47162 * 174.99760 * 3 2 1 7 7 C 1.50699 * 109.47370 * 185.00106 * 6 3 2 8 8 O 1.21288 * 120.00153 * 0.02562 * 7 6 3 9 9 N 1.34776 * 120.00362 * 180.02562 * 7 6 3 10 10 C 1.46503 * 120.00068 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46718 * 180.02562 * 10 9 7 12 12 H 1.08990 * 115.52003 * 29.58079 * 11 10 9 13 13 C 1.53006 * 117.40731 * 244.21485 * 11 10 9 14 14 H 1.09003 * 119.52038 * 4.07691 * 13 11 10 15 15 C 1.54376 * 118.12820 * 160.67107 * 13 11 10 16 16 N 1.48565 * 104.59130 * 87.23144 * 15 13 11 17 17 C 1.46907 * 110.99899 * 200.95940 * 16 15 13 18 18 C 1.50696 * 109.46917 * 189.99966 * 17 16 15 19 19 O 1.21288 * 120.00198 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99689 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99829 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00188 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99620 * 180.02562 * 21 20 18 24 24 N 1.31419 * 119.99737 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00562 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.46858 * 89.99664 * 25 23 21 27 27 H 1.48496 * 109.47189 * 210.00053 * 25 23 21 28 28 H 1.48503 * 109.46655 * 329.99924 * 25 23 21 29 29 C 1.52142 * 104.44326 * 320.24918 * 16 15 13 30 30 C 1.53003 * 117.43889 * 175.00275 * 11 10 9 31 31 H 1.09002 * 119.52639 * 355.86343 * 30 11 10 32 32 H 1.08999 * 109.46473 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47158 * 299.99407 * 1 2 3 34 34 H 1.09003 * 109.47246 * 59.99788 * 1 2 3 35 35 H 1.08998 * 109.47158 * 240.00593 * 2 1 3 36 36 H 1.08995 * 109.47457 * 120.00518 * 2 1 3 37 37 H 1.09007 * 109.46781 * 60.00118 * 5 3 2 38 38 H 1.08999 * 109.47286 * 179.97438 * 5 3 2 39 39 H 1.08991 * 109.47220 * 299.99929 * 5 3 2 40 40 H 1.09000 * 109.46985 * 65.00731 * 6 3 2 41 41 H 1.08999 * 109.47799 * 305.00646 * 6 3 2 42 42 H 0.97002 * 119.99733 * 0.02562 * 9 7 6 43 43 H 1.09000 * 109.47224 * 60.00365 * 10 9 7 44 44 H 1.08992 * 109.47398 * 299.99853 * 10 9 7 45 45 H 1.08999 * 110.41445 * 206.00579 * 15 13 11 46 46 H 1.08994 * 110.41205 * 328.45896 * 15 13 11 47 47 H 1.09001 * 109.46903 * 310.00160 * 17 16 15 48 48 H 1.08994 * 109.46880 * 69.99933 * 17 16 15 49 49 H 0.96995 * 120.00421 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99546 * 180.02562 * 24 23 21 51 51 H 1.08997 * 110.22960 * 281.87154 * 29 16 15 52 52 H 1.09003 * 112.21772 * 158.30499 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1258 7 6 4.0569 2.8634 0.2493 8 8 3.2659 3.7828 0.2384 9 7 5.3761 3.1109 0.3720 10 6 5.8544 4.4904 0.4927 11 6 7.3794 4.4923 0.6170 12 1 7.8919 3.6676 0.1220 13 6 7.9786 5.0109 1.9258 14 1 7.3169 5.2956 2.7439 15 6 9.4317 4.6170 2.2675 16 7 10.2656 5.6552 1.6089 17 6 11.6407 5.1779 1.4101 18 6 12.5125 6.3262 0.9715 19 8 12.0352 7.4331 0.8372 20 7 13.8225 6.1231 0.7285 21 6 14.6155 7.1677 0.3289 22 1 14.1906 8.1534 0.2093 23 6 15.9660 6.9581 0.0778 24 7 16.7263 7.9595 -0.3047 25 14 16.7009 5.2532 0.2840 26 1 16.6020 4.5131 -0.9997 27 1 18.1277 5.3735 0.6775 28 1 15.9570 4.5178 1.3380 29 6 9.5829 5.8980 0.2711 30 6 8.0835 5.8505 0.6360 31 1 7.5000 6.7601 0.4939 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5137 -0.8900 36 1 1.8934 -0.5139 0.8899 37 1 0.5488 2.1253 -1.3968 38 1 1.9981 3.1544 -1.3070 39 1 2.0698 1.5877 -2.1491 40 1 4.0029 0.9838 -0.7596 41 1 3.8571 0.8801 1.0113 42 1 6.0087 2.3757 0.3804 43 1 5.4167 4.9506 1.3785 44 1 5.5617 5.0552 -0.3924 45 1 9.5864 4.6332 3.3463 46 1 9.6632 3.6313 1.8640 47 1 12.0221 4.7689 2.3457 48 1 11.6489 4.4023 0.6444 49 1 14.2041 5.2378 0.8355 50 1 17.6689 7.8131 -0.4803 51 1 9.8294 5.0993 -0.4283 52 1 9.8403 6.8687 -0.1529 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570917357.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:15 Heat of formation + Delta-G solvation = -71.353162 kcal Electronic energy + Delta-G solvation = -28203.887966 eV Core-core repulsion = 24202.861742 eV Total energy + Delta-G solvation = -4001.026223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.26214 -40.71187 -39.86875 -37.41072 -36.39330 -35.88056 -34.63162 -33.72105 -31.73469 -30.08552 -29.37801 -28.76068 -27.36413 -25.94678 -24.66748 -22.96272 -21.96316 -21.34293 -21.19614 -21.08388 -20.58258 -20.12499 -18.07398 -17.69824 -17.29335 -16.81472 -16.68961 -16.52402 -16.19105 -15.89932 -15.72432 -15.25007 -14.99972 -14.88338 -14.76609 -14.59332 -14.40984 -14.30662 -13.98036 -13.79022 -13.53057 -13.35446 -13.19646 -13.00031 -12.78635 -12.72102 -12.55806 -12.40609 -12.26811 -12.17740 -12.10837 -11.97052 -11.74615 -11.53127 -11.49047 -11.37991 -11.08502 -10.99501 -10.62783 -10.39218 -10.23330 -10.01860 -9.32530 -8.40380 -6.01398 1.30403 1.36132 1.45293 1.70794 1.98049 2.13640 2.23921 2.52108 2.71102 3.15709 3.21447 3.38506 3.64239 3.79097 3.87486 4.00729 4.03294 4.09012 4.13296 4.20672 4.24372 4.33718 4.36382 4.46569 4.47732 4.53306 4.57890 4.65288 4.68117 4.70746 4.75857 4.77065 4.85990 4.93593 4.96057 5.06849 5.16339 5.18456 5.20337 5.25202 5.27307 5.33123 5.46256 5.53513 5.56825 5.61757 5.72696 5.91106 6.04002 6.61143 6.61383 6.89935 7.33002 7.41443 7.99855 8.77548 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028552 B = 0.001521 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.424940 B =18400.898041 C =18775.848166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C -0.076 4.076 4 H 0.056 0.944 5 C -0.153 4.153 6 C -0.131 4.131 7 C 0.506 3.494 8 O -0.583 6.583 9 N -0.718 5.718 10 C 0.157 3.843 11 C -0.108 4.108 12 H 0.125 0.875 13 C -0.145 4.145 14 H 0.126 0.874 15 C 0.062 3.938 16 N -0.518 5.518 17 C 0.043 3.957 18 C 0.451 3.549 19 O -0.609 6.609 20 N -0.593 5.593 21 C -0.329 4.329 22 H 0.052 0.948 23 C -0.016 4.016 24 N -0.937 5.937 25 Si 0.966 3.034 26 H -0.256 1.256 27 H -0.276 1.276 28 H -0.230 1.230 29 C 0.067 3.933 30 C -0.166 4.166 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.058 0.942 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.417 0.583 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.120 0.880 48 H 0.084 0.916 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.057 0.943 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.691 -25.843 2.533 37.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.095 4.095 4 H 0.075 0.925 5 C -0.210 4.210 6 C -0.170 4.170 7 C 0.294 3.706 8 O -0.463 6.463 9 N -0.371 5.371 10 C 0.033 3.967 11 C -0.127 4.127 12 H 0.143 0.857 13 C -0.164 4.164 14 H 0.144 0.856 15 C -0.064 4.064 16 N -0.243 5.243 17 C -0.089 4.089 18 C 0.239 3.761 19 O -0.493 6.493 20 N -0.235 5.235 21 C -0.458 4.458 22 H 0.071 0.929 23 C -0.214 4.214 24 N -0.577 5.577 25 Si 0.786 3.214 26 H -0.181 1.181 27 H -0.201 1.201 28 H -0.153 1.153 29 C -0.060 4.060 30 C -0.185 4.185 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.254 0.746 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.138 0.862 48 H 0.102 0.898 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.075 0.925 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -27.305 -23.861 2.721 36.364 hybrid contribution 1.268 -0.511 -0.613 1.498 sum -26.037 -24.372 2.108 35.726 Atomic orbital electron populations 1.21833 0.96086 1.01870 1.01615 1.21558 0.95911 0.94813 1.02935 1.20897 0.93536 0.96751 0.98361 0.92535 1.21954 1.01263 1.00705 0.97046 1.21814 0.96992 0.91829 1.06407 1.21366 0.81818 0.92715 0.74689 1.90684 1.55825 1.48337 1.51483 1.45937 1.07769 1.08985 1.74371 1.20635 0.90743 0.83787 1.01514 1.22560 0.93563 0.97085 0.99472 0.85678 1.23640 0.97310 1.03912 0.91521 0.85586 1.22706 0.89787 0.93264 1.00667 1.66154 1.00288 1.39670 1.18170 1.21988 0.89740 0.93630 1.03519 1.20936 0.82520 0.90995 0.81668 1.90542 1.74220 1.27933 1.56565 1.42028 1.08364 1.10396 1.62742 1.18996 0.91649 0.90854 1.44288 0.92936 1.26128 0.95610 1.03652 0.95991 1.69817 1.07328 1.34131 1.46458 0.85350 0.78619 0.77049 0.80394 1.18086 1.20101 1.15298 1.23138 0.91423 1.01027 0.90386 1.23309 0.95363 0.95921 1.03941 0.87035 0.91990 0.93343 0.92881 0.90941 0.90852 0.92762 0.93570 0.92300 0.86649 0.86384 0.74557 0.91943 0.92028 0.88593 0.91293 0.86160 0.89777 0.77490 0.91191 0.92499 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.67 71.98 0.70 -0.65 16 2 C -0.11 -0.84 5.40 30.59 0.17 -0.68 16 3 C -0.08 -0.87 2.04 -10.80 -0.02 -0.90 16 4 H 0.06 0.89 7.96 -2.38 -0.02 0.87 16 5 C -0.15 -2.19 8.69 71.98 0.63 -1.56 16 6 C -0.13 -1.05 5.17 29.85 0.15 -0.89 16 7 C 0.51 7.80 7.55 87.66 0.66 8.46 16 8 O -0.58 -14.56 13.97 -3.05 -0.04 -14.60 16 9 N -0.72 -8.18 5.56 -463.05 -2.57 -10.75 16 10 C 0.16 2.40 5.95 86.38 0.51 2.91 16 11 C -0.11 -1.55 5.38 -10.79 -0.06 -1.61 16 12 H 0.13 1.39 8.04 -2.39 -0.02 1.37 16 13 C -0.15 -2.54 6.73 -9.90 -0.07 -2.60 16 14 H 0.13 2.05 8.12 -2.39 -0.02 2.03 16 15 C 0.06 1.19 6.27 86.45 0.54 1.74 16 16 N -0.52 -15.34 5.03 -875.67 -4.40 -19.75 16 17 C 0.04 1.29 5.32 85.55 0.46 1.74 16 18 C 0.45 20.49 7.63 87.66 0.67 21.16 16 19 O -0.61 -34.38 14.90 -3.05 -0.05 -34.43 16 20 N -0.59 -27.95 5.09 -306.99 -1.56 -29.52 16 21 C -0.33 -19.39 10.16 84.04 0.85 -18.53 16 22 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 23 C -0.02 -0.86 5.50 84.92 0.47 -0.39 16 24 N -0.94 -56.76 13.96 21.66 0.30 -56.46 16 25 Si 0.97 38.41 27.74 68.60 1.90 40.32 16 26 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 27 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 28 H -0.23 -7.60 6.52 99.48 0.65 -6.95 16 29 C 0.07 1.94 5.91 85.73 0.51 2.45 16 30 C -0.17 -3.64 6.75 -9.90 -0.07 -3.71 16 31 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.05 0.50 6.57 -2.39 -0.02 0.48 16 35 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.05 0.75 6.57 -2.38 -0.02 0.73 16 38 H 0.05 0.94 5.95 -2.39 -0.01 0.92 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.42 2.04 8.40 -92.71 -0.78 1.26 16 43 H 0.06 1.10 7.94 -2.39 -0.02 1.08 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.07 0.99 8.00 -2.39 -0.02 0.97 16 47 H 0.12 2.92 8.08 -2.39 -0.02 2.90 16 48 H 0.08 2.01 7.80 -2.39 -0.02 1.99 16 49 H 0.39 14.99 5.76 -92.71 -0.53 14.46 16 50 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 51 H 0.06 1.45 7.80 -2.39 -0.02 1.43 16 52 H 0.06 2.21 7.41 -2.39 -0.02 2.19 16 Total: -1.00 -84.07 412.60 -0.78 -84.85 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: -0.45 Total: 33.40 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 6.10 Total: 6.93 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -8.24 Total: -116.47 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -0.09 Total: -49.03 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.90 Total: 40.32 kcal Total: -84.07 -0.78 -84.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570917357.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.492 kcal (2) G-P(sol) polarization free energy of solvation -84.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds