Wall clock time and date at job start Tue Mar 31 2020 19:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47133 * 2 1 4 4 C 1.50698 * 109.46987 * 179.97438 * 3 2 1 5 5 O 1.21277 * 120.00330 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99919 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00027 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.73095 * 34.35162 * 7 6 4 9 9 C 1.53328 * 109.73632 * 273.64391 * 7 6 4 10 10 C 1.52600 * 108.41242 * 176.24428 * 9 7 6 11 11 C 1.53003 * 111.04271 * 62.34793 * 10 9 7 12 12 H 1.08993 * 112.06015 * 73.89306 * 11 10 9 13 13 C 1.55339 * 106.43295 * 197.06520 * 11 10 9 14 14 N 1.47600 * 106.92827 * 91.55840 * 13 11 10 15 15 C 1.46897 * 111.00115 * 238.74492 * 14 13 11 16 16 C 1.50703 * 109.47082 * 290.12779 * 15 14 13 17 17 O 1.21288 * 120.00236 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99845 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00010 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99553 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00146 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00241 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99885 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.46937 * 90.00186 * 23 21 19 25 25 H 1.48500 * 109.46669 * 209.99944 * 23 21 19 26 26 H 1.48498 * 109.46989 * 329.99845 * 23 21 19 27 27 C 1.48229 * 108.56255 * 1.01015 * 14 13 11 28 28 C 1.53906 * 104.03070 * 23.33240 * 27 14 13 29 29 H 1.09000 * 108.64981 * 77.03427 * 28 27 14 30 30 C 1.50748 * 112.99752 * 198.46750 * 28 27 14 31 31 H 1.09005 * 109.47213 * 299.99916 * 1 2 3 32 32 H 1.08996 * 109.47181 * 60.00342 * 1 2 3 33 33 H 1.09005 * 109.47271 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47372 * 240.00044 * 2 1 3 35 35 H 1.08996 * 109.47181 * 119.99658 * 2 1 3 36 36 H 1.08996 * 109.46955 * 59.99789 * 3 2 1 37 37 H 1.08996 * 109.46807 * 299.99886 * 3 2 1 38 38 H 0.97006 * 119.99930 * 0.02562 * 6 4 3 39 39 H 1.08998 * 109.68174 * 295.97465 * 9 7 6 40 40 H 1.09000 * 109.67241 * 56.51903 * 9 7 6 41 41 H 1.08990 * 109.16157 * 182.74837 * 10 9 7 42 42 H 1.08996 * 109.16148 * 301.94249 * 10 9 7 43 43 H 1.08991 * 109.97082 * 210.92757 * 13 11 10 44 44 H 1.08999 * 109.96648 * 332.19451 * 13 11 10 45 45 H 1.09003 * 109.47306 * 50.12549 * 15 14 13 46 46 H 1.08994 * 109.47227 * 170.12394 * 15 14 13 47 47 H 0.97000 * 120.00126 * 359.97438 * 18 16 15 48 48 H 0.96989 * 120.00237 * 179.97438 * 22 21 19 49 49 H 1.09000 * 110.51530 * 141.96899 * 27 14 13 50 50 H 1.09001 * 110.52422 * 264.69630 * 27 14 13 51 51 H 1.09000 * 109.03225 * 304.51977 * 30 28 27 52 52 H 1.09002 * 109.02823 * 185.68405 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0015 6 7 4.2209 2.6097 0.0002 7 6 5.6859 2.6097 0.0014 8 1 6.0543 1.7622 -0.5765 9 6 6.2025 2.5191 1.4422 10 6 7.7252 2.4266 1.4033 11 6 8.3361 3.6826 0.7787 12 1 8.2905 4.5384 1.4521 13 6 9.7942 3.3149 0.3891 14 7 9.7577 2.8322 -1.0053 15 6 10.2747 1.4606 -1.1012 16 6 11.7605 1.4650 -0.8490 17 8 12.3325 2.5081 -0.6130 18 7 12.4536 0.3097 -0.8857 19 6 13.8053 0.3137 -0.6567 20 1 14.3147 1.2427 -0.4474 21 6 14.5200 -0.8773 -0.6950 22 7 15.8158 -0.8734 -0.4761 23 14 13.6389 -2.4841 -1.0577 24 1 13.6362 -2.7273 -2.5226 25 1 14.3404 -3.5989 -0.3721 26 1 12.2397 -2.4031 -0.5667 27 6 8.3607 2.9088 -1.4948 28 6 7.7086 3.9752 -0.5968 29 1 8.0301 4.9601 -0.9356 30 6 6.2025 3.9129 -0.6071 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9563 0.8899 37 1 1.6766 1.9563 -0.8900 38 1 3.7358 3.4498 -0.0001 39 1 5.9029 3.4088 1.9962 40 1 5.7930 1.6311 1.9237 41 1 8.1027 2.3125 2.4194 42 1 8.0158 1.5566 0.8147 43 1 10.4322 4.1956 0.4615 44 1 10.1679 2.5290 1.0454 45 1 9.7819 0.8337 -0.3581 46 1 10.0765 1.0665 -2.0979 47 1 11.9961 -0.5247 -1.0740 48 1 16.3146 -1.7048 -0.5024 49 1 8.3382 3.2225 -2.5384 50 1 7.8598 1.9484 -1.3726 51 1 5.8506 3.9888 -1.6360 52 1 5.8081 4.7530 -0.0354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571011021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:23 Heat of formation + Delta-G solvation = -84.025089 kcal Electronic energy + Delta-G solvation = -29921.406923 eV Core-core repulsion = 25919.831204 eV Total energy + Delta-G solvation = -4001.575719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.86573 -39.73266 -38.18395 -36.27206 -34.70842 -34.02573 -33.53836 -31.84659 -31.61286 -30.58541 -28.37286 -27.41990 -26.43438 -24.33053 -22.84213 -22.62941 -21.76590 -20.86513 -20.56595 -19.26952 -18.97529 -18.14847 -17.39197 -16.82206 -16.25217 -16.01852 -15.56415 -15.07616 -14.83858 -14.75291 -14.59757 -14.32133 -14.05916 -14.00045 -13.51038 -13.38441 -13.29070 -12.91181 -12.62854 -12.54802 -12.42416 -12.41303 -12.12076 -12.11411 -11.84445 -11.75702 -11.61971 -11.59012 -11.35063 -11.15379 -11.13770 -10.80296 -10.75075 -10.54755 -10.43750 -10.21056 -10.00088 -9.92541 -9.50280 -9.30685 -8.50021 -8.11891 -7.88438 -6.25974 -3.76926 2.35608 2.82514 3.07549 3.11525 3.19140 3.81356 4.02331 4.15309 4.28932 4.32254 4.38567 4.46158 4.57313 4.65442 4.75436 4.84508 4.97075 4.99092 5.04312 5.06179 5.15871 5.17748 5.22151 5.27423 5.28343 5.31667 5.38021 5.48892 5.60029 5.63557 5.68327 5.72808 5.74089 5.74591 5.79650 5.83436 5.90091 5.91803 5.97528 6.01809 6.12465 6.16293 6.21837 6.30900 6.46347 7.17606 7.22463 7.23812 7.64558 7.94188 8.20100 8.66514 9.01122 9.48581 9.90652 10.87310 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013989 B = 0.002406 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.067336 B =11632.464530 C =13092.815558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.510 3.490 5 O -0.537 6.537 6 N -0.729 5.729 7 C 0.142 3.858 8 H 0.091 0.909 9 C -0.125 4.125 10 C -0.113 4.113 11 C -0.108 4.108 12 H 0.088 0.912 13 C 0.058 3.942 14 N -0.503 5.503 15 C 0.037 3.963 16 C 0.454 3.546 17 O -0.558 6.558 18 N -0.594 5.594 19 C -0.302 4.302 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.883 5.883 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.044 3.956 28 C -0.087 4.087 29 H 0.085 0.915 30 C -0.110 4.110 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.398 0.602 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.049 0.951 46 H 0.087 0.913 47 H 0.370 0.630 48 H 0.272 0.728 49 H 0.079 0.921 50 H 0.047 0.953 51 H 0.069 0.931 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.065 7.295 1.386 32.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.181 4.181 4 C 0.296 3.704 5 O -0.413 6.413 6 N -0.380 5.380 7 C 0.038 3.962 8 H 0.109 0.891 9 C -0.163 4.163 10 C -0.151 4.151 11 C -0.127 4.127 12 H 0.107 0.893 13 C -0.069 4.069 14 N -0.227 5.227 15 C -0.095 4.095 16 C 0.240 3.760 17 O -0.439 6.439 18 N -0.234 5.234 19 C -0.431 4.431 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.524 5.524 23 Si 0.705 3.295 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.083 4.083 28 C -0.106 4.106 29 H 0.103 0.897 30 C -0.149 4.149 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.232 0.768 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.106 0.894 47 H 0.202 0.798 48 H 0.083 0.917 49 H 0.098 0.902 50 H 0.065 0.935 51 H 0.088 0.912 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -30.675 7.419 1.242 31.584 hybrid contribution -1.178 -1.544 0.218 1.954 sum -31.852 5.875 1.460 32.423 Atomic orbital electron populations 1.21795 0.95462 1.02061 1.01713 1.21285 0.95259 0.94641 1.03686 1.21731 0.91762 1.00317 1.04275 1.20803 0.90339 0.83667 0.75574 1.90732 1.70492 1.31280 1.48817 1.46126 1.07325 1.08613 1.75920 1.21052 0.78833 0.99328 0.97030 0.89093 1.21882 0.96073 1.02095 0.96272 1.21562 0.94280 0.97934 1.01366 1.22501 0.96131 0.97953 0.96115 0.89339 1.23063 0.94331 1.01368 0.88177 1.63377 1.18143 1.20722 1.20469 1.22121 0.95439 0.90091 1.01834 1.19668 0.87838 0.84504 0.84035 1.90554 1.70425 1.31024 1.51883 1.42222 1.09078 1.07170 1.64971 1.19415 0.80945 0.97442 1.45271 0.86325 1.25027 0.95491 0.97928 0.97787 1.69619 1.06043 1.27879 1.48834 0.86685 0.79574 0.83999 0.79230 1.19631 1.20233 1.19525 1.23044 0.88154 0.97771 0.99367 1.21306 0.93144 1.00619 0.95542 0.89700 1.21147 0.95620 0.96720 1.01396 0.92717 0.92692 0.92346 0.91188 0.91217 0.89001 0.88969 0.76794 0.91741 0.91664 0.91464 0.91963 0.90045 0.92348 0.93292 0.89430 0.79785 0.91698 0.90245 0.93525 0.91192 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.11 -0.75 5.22 -26.73 -0.14 -0.89 16 3 C -0.14 -0.78 5.70 -27.88 -0.16 -0.94 16 4 C 0.51 4.60 7.81 -10.99 -0.09 4.51 16 5 O -0.54 -7.36 15.64 5.56 0.09 -7.27 16 6 N -0.73 -5.11 5.09 -53.73 -0.27 -5.39 16 7 C 0.14 1.25 2.30 -67.85 -0.16 1.09 16 8 H 0.09 1.05 6.23 -51.93 -0.32 0.73 16 9 C -0.12 -1.17 5.53 -26.77 -0.15 -1.32 16 10 C -0.11 -1.24 4.62 -26.93 -0.12 -1.36 16 11 C -0.11 -1.18 3.60 -88.86 -0.32 -1.50 16 12 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 13 C 0.06 0.90 4.96 -2.20 -0.01 0.89 16 14 N -0.50 -8.18 4.86 -232.21 -1.13 -9.31 16 15 C 0.04 0.65 5.04 -4.98 -0.03 0.63 16 16 C 0.45 10.65 7.40 -10.98 -0.08 10.57 16 17 O -0.56 -15.24 15.12 5.55 0.08 -15.16 16 18 N -0.59 -14.62 5.09 -10.96 -0.06 -14.68 16 19 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 20 H 0.12 3.90 7.39 -52.49 -0.39 3.52 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -26.28 13.96 55.50 0.77 -25.51 16 23 Si 0.88 19.97 27.74 -169.99 -4.71 15.26 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -5.65 6.52 56.52 0.37 -5.28 16 27 C 0.04 0.54 5.63 -2.62 -0.01 0.53 16 28 C -0.09 -0.85 2.81 -90.76 -0.25 -1.11 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 C -0.11 -0.81 4.86 -27.95 -0.14 -0.95 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.40 1.56 8.61 -40.82 -0.35 1.21 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.79 6.55 -51.93 -0.34 0.45 16 43 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.06 1.00 6.89 -51.93 -0.36 0.64 16 45 H 0.05 0.79 7.38 -51.93 -0.38 0.41 16 46 H 0.09 1.38 8.07 -51.93 -0.42 0.97 16 47 H 0.37 8.07 5.76 -40.82 -0.24 7.84 16 48 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 49 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 50 H 0.05 0.56 5.82 -51.93 -0.30 0.26 16 51 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -35.31 400.49 -9.76 -45.07 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -9.03 Total: 9.03 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.54 Total: 1.93 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.68 Total: -54.88 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.17 Total: -22.43 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.71 Total: 15.26 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.31 -9.76 -45.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571011021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.957 kcal (2) G-P(sol) polarization free energy of solvation -35.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds