Wall clock time and date at job start Tue Mar 31 2020 19:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.47062 * 2 1 4 4 C 1.50705 * 109.47125 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99570 * 359.97438 * 4 3 2 6 6 N 1.34769 * 120.00012 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99880 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.67434 * 34.50393 * 7 6 4 9 9 C 1.53329 * 109.67957 * 273.95566 * 7 6 4 10 10 C 1.52829 * 108.10723 * 176.17374 * 9 7 6 11 11 C 1.50748 * 111.73093 * 58.91236 * 10 9 7 12 12 H 1.09000 * 109.25829 * 186.91673 * 11 10 9 13 13 C 1.53907 * 113.00557 * 65.12931 * 11 10 9 14 14 N 1.48232 * 104.02704 * 198.45658 * 13 11 10 15 15 C 1.46896 * 111.00207 * 145.60079 * 14 13 11 16 16 C 1.50702 * 109.47348 * 183.34006 * 15 14 13 17 17 O 1.21299 * 119.99694 * 353.86017 * 16 15 14 18 18 N 1.34776 * 120.00212 * 173.85737 * 16 15 14 19 19 C 1.37097 * 119.99780 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00418 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99830 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99775 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00192 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.46912 * 90.00435 * 23 21 19 25 25 H 1.48501 * 109.47055 * 210.00139 * 23 21 19 26 26 H 1.48496 * 109.46694 * 330.00218 * 23 21 19 27 27 C 1.47600 * 108.56638 * 23.33282 * 14 13 11 28 28 C 1.53971 * 113.88401 * 308.60219 * 11 10 9 29 29 H 1.08997 * 112.21878 * 281.49153 * 28 11 10 30 30 C 1.52602 * 109.67539 * 155.00347 * 7 6 4 31 31 H 1.08999 * 109.46618 * 300.00299 * 1 2 3 32 32 H 1.09001 * 109.47239 * 59.99758 * 1 2 3 33 33 H 1.09003 * 109.47017 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.46778 * 240.00334 * 2 1 3 35 35 H 1.09001 * 109.47239 * 120.00241 * 2 1 3 36 36 H 1.09000 * 109.47163 * 60.00123 * 3 2 1 37 37 H 1.09001 * 109.47291 * 300.00210 * 3 2 1 38 38 H 0.97003 * 120.00439 * 359.97438 * 6 4 3 39 39 H 1.09001 * 109.73515 * 295.82289 * 9 7 6 40 40 H 1.08996 * 109.73179 * 56.51964 * 9 7 6 41 41 H 1.09000 * 109.02492 * 179.49691 * 10 9 7 42 42 H 1.09000 * 109.02214 * 298.40763 * 10 9 7 43 43 H 1.09004 * 110.51348 * 317.09116 * 13 11 10 44 44 H 1.08992 * 110.52028 * 79.67884 * 13 11 10 45 45 H 1.08996 * 109.47211 * 303.34167 * 15 14 13 46 46 H 1.08996 * 109.46848 * 63.34310 * 15 14 13 47 47 H 0.96997 * 119.99832 * 359.97438 * 18 16 15 48 48 H 0.96999 * 120.00058 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.96472 * 120.37040 * 27 14 13 50 50 H 1.08991 * 109.97295 * 241.63752 * 27 14 13 51 51 H 1.09008 * 109.16254 * 302.48483 * 30 7 6 52 52 H 1.08992 * 109.16642 * 61.73068 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2209 2.6096 -0.0002 7 6 5.6859 2.6096 -0.0003 8 1 6.0529 1.7640 -0.5820 9 6 6.2023 2.5095 1.4400 10 6 7.7270 2.4156 1.3924 11 6 8.3388 3.6120 0.7093 12 1 9.4096 3.4480 0.5877 13 6 8.1122 4.9253 1.4790 14 7 8.3585 5.9813 0.4682 15 6 7.4780 7.1363 0.6883 16 6 7.6987 8.1515 -0.4035 17 8 8.5855 7.9867 -1.2145 18 7 6.9107 9.2423 -0.4788 19 6 7.1112 10.1654 -1.4723 20 1 7.9003 10.0184 -2.1949 21 6 6.2985 11.2898 -1.5503 22 7 5.3380 11.4685 -0.6713 23 14 6.5711 12.5474 -2.9044 24 1 5.7561 12.1819 -4.0906 25 1 6.1659 13.8916 -2.4205 26 1 8.0081 12.5683 -3.2784 27 6 8.1490 5.4047 -0.8743 28 6 7.7284 3.9222 -0.6698 29 1 8.1105 3.2612 -1.4478 30 6 6.1997 3.9122 -0.6070 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.7360 3.4497 0.0001 39 1 5.9055 3.3963 1.9999 40 1 5.7934 1.6185 1.9164 41 1 8.1110 2.3527 2.4106 42 1 8.0107 1.5140 0.8495 43 1 7.0877 4.9804 1.8472 44 1 8.8188 5.0113 2.3043 45 1 6.4386 6.8086 0.6750 46 1 7.7046 7.5870 1.6545 47 1 6.2013 9.3738 0.1696 48 1 4.7709 12.2535 -0.7255 49 1 7.3592 5.9477 -1.3934 50 1 9.0741 5.4532 -1.4487 51 1 5.7994 4.0196 -1.6152 52 1 5.8611 4.7493 0.0034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571011022.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:25 Heat of formation + Delta-G solvation = -91.808523 kcal Electronic energy + Delta-G solvation = -30049.843685 eV Core-core repulsion = 26047.930450 eV Total energy + Delta-G solvation = -4001.913234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.78424 -39.65412 -38.09483 -36.09049 -34.61461 -34.11204 -33.58792 -31.63072 -31.23259 -30.43442 -28.22384 -26.94539 -26.74337 -24.50177 -22.85529 -22.58144 -21.63480 -20.95190 -20.29660 -19.18576 -18.79705 -17.83341 -17.16560 -16.44481 -16.17734 -16.09458 -15.77687 -15.15137 -14.74002 -14.65089 -14.48357 -14.32642 -14.01510 -13.81635 -13.60980 -13.37143 -13.10651 -12.92277 -12.74084 -12.46543 -12.30806 -12.07567 -11.91861 -11.88480 -11.80295 -11.54482 -11.51173 -11.37391 -11.28537 -11.06889 -11.05204 -10.75367 -10.54887 -10.42628 -10.39696 -10.26004 -10.22726 -9.88755 -9.50716 -9.19182 -8.37882 -7.98456 -7.86229 -6.43992 -3.84646 2.45332 2.95265 3.15695 3.24630 3.30677 3.89206 4.05534 4.25561 4.39865 4.44449 4.49839 4.55831 4.66972 4.76688 4.86852 5.00036 5.04962 5.11752 5.13451 5.16756 5.19930 5.24984 5.28946 5.32906 5.40789 5.43708 5.47111 5.49860 5.67693 5.70750 5.77409 5.79902 5.82121 5.86165 5.93649 5.95661 5.98676 6.01730 6.09776 6.14783 6.23380 6.28881 6.34612 6.39069 6.56224 7.30125 7.30825 7.32936 7.53095 8.03729 8.04261 8.59641 9.16111 9.52284 10.04095 10.73816 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011199 B = 0.002572 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.708880 B =10883.081083 C =12764.969833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.512 3.488 5 O -0.543 6.543 6 N -0.728 5.728 7 C 0.146 3.854 8 H 0.088 0.912 9 C -0.127 4.127 10 C -0.102 4.102 11 C -0.093 4.093 12 H 0.080 0.920 13 C 0.047 3.953 14 N -0.506 5.506 15 C 0.041 3.959 16 C 0.441 3.559 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.065 3.935 28 C -0.105 4.105 29 H 0.089 0.911 30 C -0.122 4.122 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.400 0.600 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.061 0.939 50 H 0.080 0.920 51 H 0.069 0.931 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.977 -19.595 5.472 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.183 4.183 4 C 0.299 3.701 5 O -0.420 6.420 6 N -0.379 5.379 7 C 0.041 3.959 8 H 0.106 0.894 9 C -0.166 4.166 10 C -0.141 4.141 11 C -0.112 4.112 12 H 0.099 0.901 13 C -0.081 4.081 14 N -0.230 5.230 15 C -0.090 4.090 16 C 0.227 3.773 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.062 4.062 28 C -0.125 4.125 29 H 0.107 0.893 30 C -0.160 4.160 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.234 0.766 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.099 0.901 51 H 0.088 0.912 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.561 -20.090 4.972 21.430 hybrid contribution -1.519 1.178 -0.233 1.937 sum -7.080 -18.911 4.739 20.742 Atomic orbital electron populations 1.21803 0.95482 1.01957 1.01853 1.21271 0.95247 0.94668 1.03490 1.21748 0.91831 1.00243 1.04480 1.20775 0.90321 0.83616 0.75410 1.90694 1.70579 1.31304 1.49435 1.46182 1.07474 1.08740 1.75496 1.20976 0.78861 0.99194 0.96822 0.89354 1.21964 0.95965 1.02146 0.96492 1.20856 0.94543 0.97756 1.00912 1.21423 1.00845 0.94362 0.94573 0.90149 1.23006 0.99811 0.89839 0.95442 1.63462 1.51769 1.05535 1.02265 1.22086 0.94531 0.92646 0.99785 1.19767 0.85415 0.84170 0.87990 1.90534 1.34444 1.77555 1.43593 1.41874 1.30450 1.19271 1.28574 1.19693 1.15995 0.99776 1.07276 0.87940 1.25254 0.95779 0.98493 0.98423 1.69610 1.19403 1.29642 1.35755 0.85871 0.78922 0.79298 0.80297 1.20446 1.20915 1.19395 1.23017 1.01885 0.90412 0.90925 1.22481 0.93763 0.98700 0.97560 0.89311 1.21872 0.96223 0.96428 1.01434 0.92665 0.92632 0.92422 0.91289 0.91310 0.88908 0.88881 0.76558 0.91610 0.91556 0.91522 0.91631 0.93590 0.90448 0.93878 0.89401 0.77552 0.91893 0.92008 0.90124 0.91247 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.11 -0.83 5.22 -26.73 -0.14 -0.97 16 3 C -0.14 -1.01 5.70 -27.88 -0.16 -1.17 16 4 C 0.51 5.28 7.81 -10.99 -0.09 5.19 16 5 O -0.54 -7.65 15.64 5.56 0.09 -7.56 16 6 N -0.73 -6.66 5.09 -53.84 -0.27 -6.93 16 7 C 0.15 1.49 2.43 -67.96 -0.17 1.33 16 8 H 0.09 1.06 7.57 -51.93 -0.39 0.66 16 9 C -0.13 -1.25 5.41 -26.65 -0.14 -1.39 16 10 C -0.10 -0.96 5.37 -27.95 -0.15 -1.11 16 11 C -0.09 -1.02 2.80 -90.77 -0.25 -1.27 16 12 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 13 C 0.05 0.58 5.68 -2.62 -0.01 0.56 16 14 N -0.51 -8.26 5.08 -232.13 -1.18 -9.44 16 15 C 0.04 0.72 5.30 -4.98 -0.03 0.70 16 16 C 0.44 10.23 6.93 -10.98 -0.08 10.15 16 17 O -0.58 -15.32 14.36 5.54 0.08 -15.24 16 18 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 19 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 23 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 C 0.07 1.05 4.52 -2.13 -0.01 1.04 16 28 C -0.11 -1.25 3.61 -88.80 -0.32 -1.57 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 30 C -0.12 -1.33 4.10 -26.93 -0.11 -1.44 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 35 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.40 2.88 8.61 -40.82 -0.35 2.53 16 39 H 0.07 0.64 6.80 -51.93 -0.35 0.28 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.54 5.73 -51.93 -0.30 0.24 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.04 0.68 7.42 -51.93 -0.39 0.30 16 46 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 47 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.06 1.13 6.26 -51.93 -0.32 0.80 16 50 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 51 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 52 H 0.07 0.77 6.55 -51.93 -0.34 0.43 16 LS Contribution 401.82 15.07 6.06 6.06 Total: -1.00 -32.24 401.82 -10.15 -42.39 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -9.04 Total: 10.89 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.53 Total: 1.66 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.79 Total: -54.03 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: 0.17 Total: -22.80 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.24 -10.15 -42.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571011022.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.415 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds