Wall clock time and date at job start Tue Mar 31 2020 19:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47225 * 2 1 4 4 C 1.50697 * 109.47212 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99838 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00361 * 180.02562 * 4 3 2 7 7 C 1.46498 * 120.00248 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.03217 * 33.96280 * 7 6 4 9 9 C 1.52534 * 109.04520 * 274.99587 * 7 6 4 10 10 C 1.53808 * 111.69235 * 293.61450 * 9 7 6 11 11 C 1.51635 * 107.03707 * 302.44109 * 10 9 7 12 12 H 1.09000 * 110.49671 * 303.63954 * 11 10 9 13 13 C 1.53072 * 116.61896 * 176.30034 * 11 10 9 14 14 N 1.49065 * 103.41472 * 204.03163 * 13 11 10 15 15 C 1.46896 * 111.00197 * 146.44203 * 14 13 11 16 16 C 1.50703 * 109.47254 * 69.87465 * 15 14 13 17 17 O 1.21293 * 119.99482 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00290 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99729 * 180.27555 * 18 16 15 20 20 H 1.08002 * 120.00496 * 359.72414 * 19 18 16 21 21 C 1.38958 * 120.00096 * 179.72242 * 19 18 16 22 22 N 1.31414 * 119.99347 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00310 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47438 * 59.99738 * 23 21 19 25 25 H 1.48504 * 109.46883 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46866 * 299.99617 * 23 21 19 27 27 C 1.48654 * 108.30145 * 24.35173 * 14 13 11 28 28 C 1.52341 * 105.83103 * 3.20498 * 27 14 13 29 29 H 1.09002 * 110.20969 * 87.81377 * 28 27 14 30 30 C 1.51449 * 117.39939 * 214.58599 * 28 27 14 31 31 H 1.08999 * 109.47126 * 59.99766 * 1 2 3 32 32 H 1.09002 * 109.47315 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46965 * 299.99721 * 1 2 3 34 34 H 1.09000 * 109.46727 * 239.99853 * 2 1 3 35 35 H 1.08999 * 109.47126 * 120.00234 * 2 1 3 36 36 H 1.09000 * 109.47376 * 59.99701 * 3 2 1 37 37 H 1.09007 * 109.47083 * 300.00405 * 3 2 1 38 38 H 0.97010 * 119.99381 * 359.97438 * 6 4 3 39 39 H 1.08995 * 109.03717 * 173.03992 * 9 7 6 40 40 H 1.09007 * 108.97369 * 54.14257 * 9 7 6 41 41 H 1.09001 * 109.94158 * 183.06004 * 10 9 7 42 42 H 1.08998 * 109.94137 * 61.81994 * 10 9 7 43 43 H 1.08998 * 110.63609 * 85.55020 * 13 11 10 44 44 H 1.08997 * 110.63160 * 322.51371 * 13 11 10 45 45 H 1.08998 * 109.47322 * 309.87468 * 15 14 13 46 46 H 1.09002 * 109.47668 * 189.87665 * 15 14 13 47 47 H 0.97001 * 119.99727 * 359.97438 * 18 16 15 48 48 H 0.97004 * 119.99790 * 179.97438 * 22 21 19 49 49 H 1.08999 * 110.17897 * 122.29000 * 27 14 13 50 50 H 1.08999 * 110.18383 * 244.11208 * 27 14 13 51 51 H 1.08997 * 109.93824 * 59.45144 * 30 28 27 52 52 H 1.08997 * 110.01097 * 298.25582 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2210 2.6096 -0.0002 7 6 5.6860 2.6096 -0.0003 8 1 6.0413 1.7552 -0.5762 9 6 6.1837 2.4835 1.4360 10 6 5.8282 3.7246 2.2720 11 6 6.4405 4.9222 1.5719 12 1 7.5142 4.7829 1.4461 13 6 6.1442 6.2963 2.1778 14 7 6.3237 7.2274 1.0276 15 6 5.3944 8.3614 1.1182 16 6 5.8010 9.2539 2.2624 17 8 6.7695 8.9727 2.9363 18 7 5.0880 10.3641 2.5375 19 6 5.4614 11.1790 3.5748 20 1 6.3242 10.9290 4.1743 21 6 4.7297 12.3267 3.8548 22 7 3.6802 12.6310 3.1249 23 14 5.2388 13.4374 5.2677 24 1 6.6165 13.9390 5.0315 25 1 4.3017 14.5860 5.3568 26 1 5.2026 12.6699 6.5385 27 6 6.1104 6.4630 -0.2294 28 6 5.7159 5.0561 0.2015 29 1 4.6370 4.9948 0.3448 30 6 6.1865 3.9048 -0.6626 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6766 1.9563 -0.8900 38 1 3.7359 3.4497 0.0001 39 1 7.2665 2.3589 1.4274 40 1 5.7286 1.6047 1.8930 41 1 6.2430 3.6284 3.2753 42 1 4.7455 3.8389 2.3257 43 1 6.8535 6.5267 2.9727 44 1 5.1208 6.3391 2.5505 45 1 4.3837 7.9903 1.2884 46 1 5.4212 8.9285 0.1878 47 1 4.3133 10.5888 1.9987 48 1 3.1692 13.4320 3.3206 49 1 5.3091 6.9158 -0.8134 50 1 7.0309 6.4334 -0.8124 51 1 7.2752 3.8993 -0.7137 52 1 5.7680 3.9954 -1.6649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571011024.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:32 Heat of formation + Delta-G solvation = -86.595795 kcal Electronic energy + Delta-G solvation = -29775.333662 eV Core-core repulsion = 25773.646468 eV Total energy + Delta-G solvation = -4001.687194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.92184 -39.54153 -38.09188 -36.36586 -34.65934 -33.94261 -33.46252 -31.64598 -31.24746 -30.50654 -28.24456 -27.30020 -26.68588 -24.52718 -22.72440 -22.50245 -21.28142 -20.85942 -20.63513 -19.47283 -19.10272 -17.84265 -17.46075 -16.43880 -16.19780 -15.89787 -15.33529 -15.23885 -14.82253 -14.70600 -14.48755 -14.25752 -14.07037 -13.87425 -13.53042 -13.37263 -13.25791 -13.09450 -12.77647 -12.52517 -12.30607 -12.23056 -12.08775 -11.96957 -11.70658 -11.59904 -11.51916 -11.44095 -11.18255 -11.09985 -11.08246 -10.94394 -10.63627 -10.43778 -10.31449 -10.20143 -10.09286 -10.03451 -9.47112 -9.27024 -8.43342 -7.95703 -7.85795 -6.40394 -3.80936 2.40615 2.92494 3.20602 3.25956 3.30455 3.92764 4.00980 4.20350 4.25962 4.35054 4.47078 4.50721 4.55036 4.63622 4.82760 4.98762 5.04777 5.08504 5.11265 5.14318 5.21545 5.24984 5.25707 5.27339 5.35664 5.37877 5.47526 5.49585 5.59056 5.68339 5.72260 5.75372 5.78740 5.79547 5.85213 5.89224 5.93719 5.95610 5.97480 6.05132 6.12203 6.29534 6.30450 6.38606 6.50449 7.20553 7.23636 7.27548 7.56145 7.98293 8.07831 8.64036 9.19951 9.56578 10.09050 10.77469 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015886 B = 0.002143 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.095268 B =13063.971328 C =13997.975864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.143 4.143 4 C 0.512 3.488 5 O -0.544 6.544 6 N -0.726 5.726 7 C 0.147 3.853 8 H 0.086 0.914 9 C -0.127 4.127 10 C -0.104 4.104 11 C -0.101 4.101 12 H 0.086 0.914 13 C 0.061 3.939 14 N -0.504 5.504 15 C 0.041 3.959 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.567 5.567 19 C -0.297 4.297 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.904 5.904 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.049 3.951 28 C -0.117 4.117 29 H 0.068 0.932 30 C -0.110 4.110 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.399 0.601 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.041 0.959 45 H 0.046 0.954 46 H 0.087 0.913 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.056 0.944 50 H 0.078 0.922 51 H 0.083 0.917 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 -21.274 -9.809 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.183 4.183 4 C 0.298 3.702 5 O -0.421 6.421 6 N -0.379 5.379 7 C 0.043 3.957 8 H 0.104 0.896 9 C -0.166 4.166 10 C -0.142 4.142 11 C -0.120 4.120 12 H 0.104 0.896 13 C -0.066 4.066 14 N -0.227 5.227 15 C -0.091 4.091 16 C 0.230 3.770 17 O -0.460 6.460 18 N -0.204 5.204 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.079 4.079 28 C -0.137 4.137 29 H 0.086 0.914 30 C -0.148 4.148 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.235 0.765 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.111 0.889 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.096 0.904 51 H 0.102 0.898 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.023 -21.822 -9.329 23.924 hybrid contribution -1.473 1.067 0.329 1.848 sum -4.496 -20.755 -9.000 23.065 Atomic orbital electron populations 1.21803 0.95460 1.01985 1.01869 1.21266 0.95275 0.94631 1.03477 1.21747 0.91866 1.00278 1.04446 1.20779 0.90338 0.83645 0.75389 1.90693 1.70565 1.31348 1.49502 1.46296 1.07462 1.08653 1.75481 1.21044 0.79470 0.98671 0.96499 0.89556 1.21914 1.01445 0.98394 0.94805 1.21321 1.00465 0.93583 0.98793 1.22131 1.00494 0.94440 0.94923 0.89576 1.22786 1.00532 0.89158 0.94166 1.64025 1.50307 1.07441 1.00957 1.22098 0.93877 0.93463 0.99694 1.19760 0.86101 0.83751 0.87389 1.90508 1.28971 1.73920 1.52599 1.41858 1.27441 1.20955 1.30155 1.19639 1.12524 1.02424 1.08113 0.88026 1.25252 0.95836 0.97971 0.98971 1.69606 1.17911 1.27087 1.39926 0.85927 0.78331 0.79077 0.80931 1.19905 1.21014 1.19959 1.22588 1.00834 0.91410 0.93022 1.22087 0.99709 0.94948 0.96936 0.91384 1.21594 1.02013 0.92688 0.98491 0.92673 0.92407 0.92606 0.91328 0.91283 0.88886 0.88970 0.76535 0.91051 0.91573 0.91425 0.92051 0.88927 0.94038 0.93604 0.89518 0.77581 0.91889 0.92547 0.90362 0.89797 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.11 -0.79 5.22 -26.73 -0.14 -0.92 16 3 C -0.14 -0.94 5.70 -27.89 -0.16 -1.10 16 4 C 0.51 4.81 7.77 -10.99 -0.09 4.72 16 5 O -0.54 -7.17 15.61 5.56 0.09 -7.09 16 6 N -0.73 -5.73 4.65 -53.61 -0.25 -5.98 16 7 C 0.15 1.26 2.71 -67.73 -0.18 1.07 16 8 H 0.09 0.84 7.52 -51.93 -0.39 0.45 16 9 C -0.13 -1.16 5.43 -26.55 -0.14 -1.31 16 10 C -0.10 -1.02 5.57 -27.00 -0.15 -1.17 16 11 C -0.10 -1.12 2.47 -89.90 -0.22 -1.35 16 12 H 0.09 1.00 8.07 -51.93 -0.42 0.58 16 13 C 0.06 0.93 5.39 -2.58 -0.01 0.91 16 14 N -0.50 -8.10 4.91 -233.03 -1.14 -9.25 16 15 C 0.04 0.71 5.11 -4.98 -0.03 0.69 16 16 C 0.44 10.47 7.59 -10.98 -0.08 10.38 16 17 O -0.58 -15.56 14.70 5.55 0.08 -15.47 16 18 N -0.57 -14.34 5.29 -10.96 -0.06 -14.39 16 19 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.56 5.50 -17.46 -0.10 0.47 16 22 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 23 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 27 C 0.05 0.57 6.57 -3.19 -0.02 0.55 16 28 C -0.12 -1.10 2.24 -90.36 -0.20 -1.30 16 29 H 0.07 0.60 6.08 -51.93 -0.32 0.29 16 30 C -0.11 -0.84 5.37 -27.08 -0.15 -0.99 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.46 8.14 -51.92 -0.42 0.03 16 38 H 0.40 2.54 6.80 -40.82 -0.28 2.26 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.60 7.84 -51.93 -0.41 0.20 16 43 H 0.09 1.69 7.46 -51.93 -0.39 1.31 16 44 H 0.04 0.64 7.66 -51.93 -0.40 0.25 16 45 H 0.05 0.73 7.85 -51.93 -0.41 0.32 16 46 H 0.09 1.39 8.00 -51.93 -0.42 0.97 16 47 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.06 0.60 7.56 -51.93 -0.39 0.21 16 50 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 51 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 52 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 405.12 15.07 6.11 6.11 Total: -1.00 -32.78 405.12 -10.05 -42.83 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -9.13 Total: 9.27 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.45 Total: 1.74 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.73 Total: -53.43 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.17 Total: -22.56 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.78 -10.05 -42.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571011024.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.769 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds