Wall clock time and date at job start Tue Mar 31 2020 20:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00141 * 2 1 4 4 H 1.09002 * 109.46959 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47078 * 119.99802 * 3 2 1 6 6 C 1.52994 * 109.47404 * 294.99892 * 5 3 2 7 7 C 1.53000 * 109.47083 * 239.99676 * 3 2 1 8 8 C 1.50703 * 109.46801 * 64.99991 * 7 3 2 9 9 O 1.21280 * 120.00262 * 0.02562 * 8 7 3 10 10 N 1.34776 * 119.99815 * 179.97438 * 8 7 3 11 11 C 1.46500 * 120.00185 * 0.02562 * 10 8 7 12 12 C 1.46497 * 119.99939 * 180.02562 * 10 8 7 13 13 C 1.53789 * 113.61480 * 217.49923 * 12 10 8 14 14 C 1.53781 * 87.07797 * 220.01646 * 13 12 10 15 15 N 1.46903 * 113.61155 * 139.97847 * 14 13 12 16 16 C 1.46907 * 111.00127 * 107.50122 * 15 14 13 17 17 C 1.50694 * 109.47357 * 180.02562 * 16 15 14 18 18 O 1.21291 * 120.00254 * 359.97438 * 17 16 15 19 19 N 1.34772 * 119.99990 * 179.97438 * 17 16 15 20 20 C 1.37102 * 120.00323 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99759 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00157 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99853 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99875 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47230 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47074 * 120.00236 * 24 22 20 27 27 H 1.48499 * 109.47207 * 240.00665 * 24 22 20 28 28 C 1.53777 * 87.08557 * 25.43337 * 14 13 12 29 29 H 1.07998 * 120.00166 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00048 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00048 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47325 * 55.00061 * 5 3 2 33 33 H 1.09008 * 109.47017 * 174.99970 * 5 3 2 34 34 H 1.09008 * 109.46970 * 60.00049 * 6 5 3 35 35 H 1.08996 * 109.47654 * 179.97438 * 6 5 3 36 36 H 1.09000 * 109.47476 * 300.00087 * 6 5 3 37 37 H 1.09002 * 109.47069 * 184.99715 * 7 3 2 38 38 H 1.08991 * 109.47625 * 305.00034 * 7 3 2 39 39 H 1.08999 * 109.47225 * 89.99719 * 11 10 8 40 40 H 1.09002 * 109.47327 * 210.00076 * 11 10 8 41 41 H 1.09002 * 109.46742 * 330.00123 * 11 10 8 42 42 H 1.09002 * 112.85285 * 348.80031 * 12 10 8 43 43 H 1.09003 * 113.60980 * 334.56323 * 13 12 10 44 44 H 1.08996 * 113.61261 * 105.46805 * 13 12 10 45 45 H 1.08997 * 113.61477 * 270.87963 * 14 13 12 46 46 H 1.00896 * 111.00347 * 343.54849 * 15 14 13 47 47 H 1.09009 * 109.46587 * 300.00227 * 16 15 14 48 48 H 1.09003 * 109.46694 * 59.99605 * 16 15 14 49 49 H 0.97001 * 120.00222 * 0.02562 * 19 17 16 50 50 H 0.97001 * 119.99196 * 179.97438 * 23 22 20 51 51 H 1.09000 * 113.61453 * 220.02254 * 28 14 13 52 52 H 1.09000 * 113.61936 * 89.11512 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3861 1.2492 6 6 2.0564 1.4307 2.4953 7 6 2.9432 1.3861 -1.2492 8 6 2.0698 1.4299 -2.4766 9 8 0.8627 1.3999 -2.3633 10 7 2.6302 1.5036 -3.7001 11 6 4.0883 1.5404 -3.8370 12 6 1.7812 1.5468 -4.8932 13 6 2.3525 0.7599 -6.0847 14 6 1.8621 1.9110 -6.9788 15 7 2.8015 2.2641 -8.0515 16 6 2.2986 1.8210 -9.3588 17 6 3.2869 2.1992 -10.4317 18 8 4.3094 2.7810 -10.1366 19 7 3.0346 1.8909 -11.7192 20 6 3.9334 2.2354 -12.6955 21 1 4.8439 2.7535 -12.4327 22 6 3.6735 1.9170 -14.0228 23 7 2.5659 1.2862 -14.3424 24 14 4.8985 2.3858 -15.3528 25 1 6.0560 3.0827 -14.7364 26 1 5.3709 1.1599 -16.0451 27 1 4.2430 3.2871 -16.3342 28 6 1.9731 2.8158 -5.7403 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.5905 0.5104 1.2952 33 1 3.5540 2.2878 1.2056 34 1 1.4455 0.5290 2.5389 35 1 2.6830 1.4880 3.3853 36 1 1.4090 2.3064 2.4494 37 1 3.5541 2.2878 -1.2056 38 1 3.5906 0.5105 -1.2951 39 1 4.4710 0.5235 -3.9230 40 1 4.3553 2.1059 -4.7298 41 1 4.5235 2.0194 -2.9599 42 1 0.7371 1.3191 -4.6783 43 1 3.4374 0.6577 -6.0604 44 1 1.8412 -0.1848 -6.2695 45 1 0.8401 1.7821 -7.3352 46 1 3.7182 1.8840 -7.8691 47 1 2.1685 0.7387 -9.3501 48 1 1.3408 2.3005 -9.5610 49 1 2.2167 1.4259 -11.9553 50 1 2.3844 1.0644 -15.2691 51 1 1.1556 3.5307 -5.6471 52 1 2.9543 3.2756 -5.6219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571661238.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:55 Heat of formation + Delta-G solvation = -38.621128 kcal Electronic energy + Delta-G solvation = -28641.589104 eV Core-core repulsion = 24641.982249 eV Total energy + Delta-G solvation = -3999.606856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.66128 -39.07659 -38.06433 -36.90014 -35.20975 -34.00460 -32.94653 -32.03464 -31.20914 -30.55738 -27.48165 -26.74018 -25.76546 -25.43635 -24.15602 -22.65500 -21.93147 -20.15437 -19.82426 -19.28249 -18.94036 -17.87485 -17.33028 -16.62240 -16.10345 -15.89680 -15.52320 -15.13643 -15.00901 -14.79062 -14.49243 -14.23217 -14.14963 -13.80341 -13.78841 -13.27231 -13.23452 -13.11768 -12.76558 -12.66538 -12.49283 -12.40693 -12.23091 -11.97533 -11.70897 -11.62649 -11.55582 -11.53059 -11.16291 -11.11822 -11.07511 -10.95833 -10.79415 -10.69162 -10.35001 -10.22952 -9.96940 -9.52843 -9.32833 -8.78338 -8.45013 -8.03213 -7.95849 -6.42542 -3.83367 2.22071 2.46913 2.76803 3.15730 3.26357 3.33539 3.90151 4.10210 4.18974 4.31153 4.40929 4.45697 4.50530 4.57064 4.76682 4.82522 4.85972 4.89963 4.92831 5.03739 5.10393 5.12980 5.17192 5.20839 5.26711 5.33597 5.43113 5.46535 5.53225 5.55760 5.60656 5.61312 5.64157 5.75060 5.80150 5.81866 5.88100 5.96203 5.97235 6.00883 6.06603 6.27816 6.42484 6.51988 6.71505 7.19485 7.25691 7.54654 7.64582 8.01574 8.05852 8.60415 9.17190 9.53691 10.04932 10.75249 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.039151 B = 0.001562 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.008925 B =17920.878578 C =18306.377983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.153 4.153 3 C -0.045 4.045 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.134 4.134 8 C 0.512 3.488 9 O -0.533 6.533 10 N -0.606 5.606 11 C 0.073 3.927 12 C 0.122 3.878 13 C -0.179 4.179 14 C 0.072 3.928 15 N -0.654 5.654 16 C 0.049 3.951 17 C 0.440 3.560 18 O -0.585 6.585 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C -0.137 4.137 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.350 0.650 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.072 0.928 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.598 -3.325 29.301 29.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C -0.064 4.064 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.209 4.209 7 C -0.173 4.173 8 C 0.300 3.700 9 O -0.409 6.409 10 N -0.338 5.338 11 C -0.070 4.070 12 C 0.018 3.982 13 C -0.219 4.219 14 C -0.040 4.040 15 N -0.285 5.285 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.177 4.177 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.136 0.864 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.117 0.883 46 H 0.171 0.829 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.090 0.910 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.839 -2.364 29.278 29.431 hybrid contribution 0.290 -1.163 -1.047 1.592 sum -1.548 -3.527 28.232 28.493 Atomic orbital electron populations 1.23699 0.95931 1.01319 0.99062 1.22613 0.95984 0.97017 1.01452 1.20172 0.96585 0.97109 0.92506 0.90088 1.21540 0.97857 1.01952 0.94017 1.21757 0.99837 1.02159 0.97105 1.21762 0.98733 1.04142 0.92707 1.20704 0.89074 0.75764 0.84427 1.90695 1.14805 1.49195 1.86248 1.47851 1.06938 1.73150 1.05896 1.21816 0.79675 1.02031 1.03498 1.22477 0.96017 0.97324 0.82393 1.24206 1.01900 0.99280 0.96544 1.22821 0.97244 0.93674 0.90247 1.60015 1.05003 1.63542 0.99943 1.21728 0.98832 0.98144 0.89604 1.19830 0.88624 0.85352 0.83617 1.90517 1.28680 1.45764 1.81925 1.41877 1.21549 1.51627 1.04983 1.19759 1.02276 1.34962 0.85907 0.87867 1.25264 0.97348 0.96959 0.98374 1.69623 1.24574 1.40550 1.19527 0.85801 0.80173 0.78173 0.80197 1.19217 1.20784 1.20730 1.23541 1.03169 0.96785 0.94181 0.89247 0.88627 0.88183 0.91846 0.91809 0.92403 0.92898 0.92789 0.88797 0.88949 0.92501 0.90247 0.90954 0.86415 0.89258 0.91056 0.88315 0.82937 0.93784 0.89548 0.77454 0.91924 0.90963 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 13.22 29.02 0.38 -1.11 16 2 C -0.15 -1.27 6.76 -36.03 -0.24 -1.52 16 3 C -0.04 -0.33 1.82 -91.77 -0.17 -0.50 16 4 H 0.08 0.73 7.60 -51.93 -0.39 0.33 16 5 C -0.12 -0.65 5.39 -26.74 -0.14 -0.79 16 6 C -0.15 -0.86 9.73 37.15 0.36 -0.50 16 7 C -0.13 -0.91 3.72 -27.88 -0.10 -1.02 16 8 C 0.51 5.24 7.42 -10.98 -0.08 5.16 16 9 O -0.53 -7.18 13.65 5.56 0.08 -7.10 16 10 N -0.61 -5.67 3.08 -172.99 -0.53 -6.20 16 11 C 0.07 0.49 8.84 59.85 0.53 1.02 16 12 C 0.12 1.27 4.21 -67.11 -0.28 0.99 16 13 C -0.18 -1.83 7.12 -25.91 -0.18 -2.02 16 14 C 0.07 0.86 4.18 -66.90 -0.28 0.58 16 15 N -0.65 -10.19 6.24 -107.13 -0.67 -10.86 16 16 C 0.05 0.86 6.01 -4.98 -0.03 0.83 16 17 C 0.44 10.33 7.82 -10.99 -0.09 10.24 16 18 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 19 N -0.56 -14.25 5.29 -10.97 -0.06 -14.31 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 24 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 C -0.14 -1.52 7.42 -25.92 -0.19 -1.71 16 29 H 0.09 0.74 8.06 -52.49 -0.42 0.32 16 30 H 0.10 0.94 7.83 -52.49 -0.41 0.53 16 31 H 0.10 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 34 H 0.06 0.36 7.38 -51.92 -0.38 -0.03 16 35 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.49 7.40 -51.93 -0.38 0.10 16 38 H 0.09 0.51 8.11 -51.93 -0.42 0.09 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.58 6.34 -51.93 -0.33 0.25 16 41 H 0.07 0.35 6.44 -51.93 -0.33 0.01 16 42 H 0.12 1.38 7.23 -51.93 -0.38 1.00 16 43 H 0.09 0.88 6.40 -51.93 -0.33 0.55 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.10 1.13 7.87 -51.93 -0.41 0.72 16 46 H 0.35 5.56 7.89 -39.29 -0.31 5.25 16 47 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 48 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 49 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 50 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 51 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 52 H 0.09 1.02 6.92 -51.93 -0.36 0.67 16 LS Contribution 416.96 15.07 6.28 6.28 Total: -1.00 -32.68 416.96 -8.80 -41.48 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -8.93 Total: 12.54 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.76 Total: 1.65 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.54 Total: -55.14 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.16 Total: -22.78 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.68 -8.80 -41.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571661238.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.856 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds