Wall clock time and date at job start Tue Mar 31 2020 20:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00141 * 2 1 4 4 H 1.09002 * 109.46959 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47078 * 119.99802 * 3 2 1 6 6 C 1.52994 * 109.47404 * 294.99892 * 5 3 2 7 7 C 1.53000 * 109.47083 * 239.99676 * 3 2 1 8 8 C 1.50703 * 109.46801 * 64.99991 * 7 3 2 9 9 O 1.21280 * 120.00262 * 0.02562 * 8 7 3 10 10 N 1.34776 * 119.99815 * 179.97438 * 8 7 3 11 11 C 1.46500 * 120.00185 * 0.02562 * 10 8 7 12 12 C 1.46497 * 119.99939 * 180.02562 * 10 8 7 13 13 C 1.53789 * 113.61480 * 217.49923 * 12 10 8 14 14 C 1.53781 * 87.07797 * 220.01646 * 13 12 10 15 15 N 1.46903 * 113.61155 * 139.97847 * 14 13 12 16 16 C 1.46907 * 111.00127 * 107.50122 * 15 14 13 17 17 C 1.50694 * 109.47357 * 180.02562 * 16 15 14 18 18 O 1.21291 * 120.00254 * 359.97438 * 17 16 15 19 19 N 1.34772 * 119.99990 * 179.97438 * 17 16 15 20 20 C 1.37102 * 120.00323 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99759 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00157 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99853 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99875 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47230 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47074 * 120.00236 * 24 22 20 27 27 H 1.48499 * 109.47207 * 240.00665 * 24 22 20 28 28 C 1.53777 * 87.08557 * 25.43337 * 14 13 12 29 29 H 1.07998 * 120.00166 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00048 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00048 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47325 * 55.00061 * 5 3 2 33 33 H 1.09008 * 109.47017 * 174.99970 * 5 3 2 34 34 H 1.09008 * 109.46970 * 60.00049 * 6 5 3 35 35 H 1.08996 * 109.47654 * 179.97438 * 6 5 3 36 36 H 1.09000 * 109.47476 * 300.00087 * 6 5 3 37 37 H 1.09002 * 109.47069 * 184.99715 * 7 3 2 38 38 H 1.08991 * 109.47625 * 305.00034 * 7 3 2 39 39 H 1.08999 * 109.47225 * 89.99719 * 11 10 8 40 40 H 1.09002 * 109.47327 * 210.00076 * 11 10 8 41 41 H 1.09002 * 109.46742 * 330.00123 * 11 10 8 42 42 H 1.09002 * 112.85285 * 348.80031 * 12 10 8 43 43 H 1.09003 * 113.60980 * 334.56323 * 13 12 10 44 44 H 1.08996 * 113.61261 * 105.46805 * 13 12 10 45 45 H 1.08997 * 113.61477 * 270.87963 * 14 13 12 46 46 H 1.00896 * 111.00347 * 343.54849 * 15 14 13 47 47 H 1.09009 * 109.46587 * 300.00227 * 16 15 14 48 48 H 1.09003 * 109.46694 * 59.99605 * 16 15 14 49 49 H 0.97001 * 120.00222 * 0.02562 * 19 17 16 50 50 H 0.97001 * 119.99196 * 179.97438 * 23 22 20 51 51 H 1.09000 * 113.61453 * 220.02254 * 28 14 13 52 52 H 1.09000 * 113.61936 * 89.11512 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3861 1.2492 6 6 2.0564 1.4307 2.4953 7 6 2.9432 1.3861 -1.2492 8 6 2.0698 1.4299 -2.4766 9 8 0.8627 1.3999 -2.3633 10 7 2.6302 1.5036 -3.7001 11 6 4.0883 1.5404 -3.8370 12 6 1.7812 1.5468 -4.8932 13 6 2.3525 0.7599 -6.0847 14 6 1.8621 1.9110 -6.9788 15 7 2.8015 2.2641 -8.0515 16 6 2.2986 1.8210 -9.3588 17 6 3.2869 2.1992 -10.4317 18 8 4.3094 2.7810 -10.1366 19 7 3.0346 1.8909 -11.7192 20 6 3.9334 2.2354 -12.6955 21 1 4.8439 2.7535 -12.4327 22 6 3.6735 1.9170 -14.0228 23 7 2.5659 1.2862 -14.3424 24 14 4.8985 2.3858 -15.3528 25 1 6.0560 3.0827 -14.7364 26 1 5.3709 1.1599 -16.0451 27 1 4.2430 3.2871 -16.3342 28 6 1.9731 2.8158 -5.7403 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.5905 0.5104 1.2952 33 1 3.5540 2.2878 1.2056 34 1 1.4455 0.5290 2.5389 35 1 2.6830 1.4880 3.3853 36 1 1.4090 2.3064 2.4494 37 1 3.5541 2.2878 -1.2056 38 1 3.5906 0.5105 -1.2951 39 1 4.4710 0.5235 -3.9230 40 1 4.3553 2.1059 -4.7298 41 1 4.5235 2.0194 -2.9599 42 1 0.7371 1.3191 -4.6783 43 1 3.4374 0.6577 -6.0604 44 1 1.8412 -0.1848 -6.2695 45 1 0.8401 1.7821 -7.3352 46 1 3.7182 1.8840 -7.8691 47 1 2.1685 0.7387 -9.3501 48 1 1.3408 2.3005 -9.5610 49 1 2.2167 1.4259 -11.9553 50 1 2.3844 1.0644 -15.2691 51 1 1.1556 3.5307 -5.6471 52 1 2.9543 3.2756 -5.6219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571661238.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:54 Heat of formation + Delta-G solvation = -60.189379 kcal Electronic energy + Delta-G solvation = -28642.524374 eV Core-core repulsion = 24641.982249 eV Total energy + Delta-G solvation = -4000.542125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.46804 -40.25612 -39.59053 -37.56199 -36.26761 -35.82413 -34.15689 -33.22186 -32.60070 -31.16797 -28.59808 -27.78081 -26.66859 -26.39421 -25.62734 -23.56171 -22.49673 -21.29287 -20.81350 -20.41701 -19.94587 -19.73268 -18.18360 -17.69219 -17.16982 -16.93734 -16.73971 -16.35519 -16.10738 -15.81012 -15.71721 -15.61386 -15.01798 -14.79219 -14.65696 -14.45620 -14.18647 -14.11789 -13.79600 -13.52517 -13.40906 -13.30320 -13.17113 -13.06334 -12.94248 -12.85834 -12.73601 -12.40777 -12.23734 -12.11764 -12.05272 -11.97975 -11.90096 -11.65951 -11.62727 -11.50929 -11.34455 -10.74560 -10.33267 -10.01306 -10.00472 -9.54683 -9.23378 -8.46626 -5.95390 1.37026 1.42457 1.54915 1.56601 1.72433 2.05060 2.06353 2.29811 2.96327 3.20875 3.44967 3.52180 3.70806 3.74411 3.84443 3.92142 3.95606 4.00167 4.26561 4.33278 4.38174 4.41573 4.46416 4.48287 4.53654 4.57317 4.63457 4.65898 4.69593 4.75423 4.76891 4.85017 4.94401 4.99884 5.03315 5.06741 5.08182 5.09364 5.19355 5.20373 5.40670 5.41542 5.47580 5.64131 5.84538 5.92754 6.06673 6.14095 6.41872 6.50565 6.60228 7.12831 7.27140 7.56563 8.11512 8.70954 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.039151 B = 0.001562 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.008925 B =17920.878578 C =18306.377983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C -0.044 4.044 4 H 0.059 0.941 5 C -0.110 4.110 6 C -0.153 4.153 7 C -0.127 4.127 8 C 0.503 3.497 9 O -0.574 6.574 10 N -0.606 5.606 11 C 0.067 3.933 12 C 0.127 3.873 13 C -0.165 4.165 14 C 0.069 3.931 15 N -0.666 5.666 16 C 0.064 3.936 17 C 0.438 3.562 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.272 1.272 28 C -0.132 4.132 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.106 0.894 46 H 0.347 0.653 47 H 0.068 0.932 48 H 0.102 0.898 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.067 0.933 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.369 -3.918 29.982 30.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.165 4.165 3 C -0.063 4.063 4 H 0.077 0.923 5 C -0.148 4.148 6 C -0.210 4.210 7 C -0.166 4.166 8 C 0.293 3.707 9 O -0.453 6.453 10 N -0.338 5.338 11 C -0.075 4.075 12 C 0.022 3.978 13 C -0.205 4.205 14 C -0.042 4.042 15 N -0.298 5.298 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.510 6.510 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.172 4.172 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.167 0.833 47 H 0.086 0.914 48 H 0.120 0.880 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.616 -2.969 29.970 30.123 hybrid contribution -0.106 -0.959 -1.205 1.544 sum -0.723 -3.928 28.765 29.041 Atomic orbital electron populations 1.23689 0.96570 1.00856 1.00898 1.22839 0.95795 0.98030 0.99795 1.20163 0.96581 0.95682 0.93908 0.92275 1.21515 0.97544 1.03133 0.92593 1.21768 0.99928 1.01442 0.97869 1.21803 0.98275 1.06202 0.90351 1.21364 0.89002 0.74891 0.85420 1.90687 1.16688 1.51078 1.86831 1.47944 1.07977 1.72526 1.05311 1.22026 0.77950 1.03027 1.04471 1.22244 0.95688 0.96811 0.83078 1.24087 1.02261 0.98738 0.95433 1.22909 0.96867 0.94956 0.89439 1.60014 1.05598 1.64179 0.99977 1.21585 0.97215 0.99615 0.88385 1.20895 0.88925 0.83581 0.84079 1.90485 1.30717 1.47157 1.82603 1.41949 1.21439 1.52200 1.05490 1.19719 1.02597 1.36626 0.87417 0.90259 1.26039 0.99025 0.96378 0.99804 1.69681 1.25533 1.40572 1.20367 0.84867 0.77799 0.78238 0.77409 1.19723 1.19579 1.19711 1.23480 1.02884 0.96903 0.93899 0.88858 0.90131 0.87041 0.90639 0.90533 0.93223 0.91840 0.93505 0.86502 0.86782 0.91313 0.90807 0.88517 0.87904 0.88593 0.90588 0.87605 0.83263 0.91443 0.88005 0.76995 0.91327 0.91410 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.47 13.22 67.78 0.90 -2.58 16 2 C -0.15 -2.35 6.76 25.65 0.17 -2.17 16 3 C -0.04 -0.60 1.82 -11.54 -0.02 -0.62 16 4 H 0.06 1.07 7.60 -2.39 -0.02 1.05 16 5 C -0.11 -0.98 5.39 30.59 0.16 -0.82 16 6 C -0.15 -1.57 9.73 71.98 0.70 -0.87 16 7 C -0.13 -1.42 3.72 29.85 0.11 -1.31 16 8 C 0.50 9.67 7.42 87.66 0.65 10.32 16 9 O -0.57 -15.55 13.65 -3.03 -0.04 -15.59 16 10 N -0.61 -10.34 3.08 -819.62 -2.53 -12.87 16 11 C 0.07 0.73 8.84 127.77 1.13 1.86 16 12 C 0.13 2.51 4.21 45.52 0.19 2.70 16 13 C -0.17 -3.10 7.12 31.12 0.22 -2.88 16 14 C 0.07 1.55 4.18 45.44 0.19 1.74 16 15 N -0.67 -20.04 6.24 -492.83 -3.08 -23.11 16 16 C 0.06 2.15 6.01 85.55 0.51 2.67 16 17 C 0.44 20.60 7.82 87.66 0.69 21.28 16 18 O -0.62 -34.12 15.78 -3.06 -0.05 -34.17 16 19 N -0.57 -29.30 5.29 -306.99 -1.62 -30.92 16 20 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 23 N -0.92 -49.56 13.05 21.66 0.28 -49.28 16 24 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 C -0.13 -2.81 7.42 31.12 0.23 -2.58 16 29 H 0.09 1.61 8.06 -2.91 -0.02 1.58 16 30 H 0.08 1.73 7.83 -2.91 -0.02 1.71 16 31 H 0.11 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.05 0.58 7.38 -2.38 -0.02 0.57 16 35 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.12 0.80 7.40 -2.39 -0.02 0.78 16 38 H 0.11 0.83 8.11 -2.39 -0.02 0.81 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.92 6.34 -2.39 -0.02 0.90 16 41 H 0.10 0.58 6.44 -2.39 -0.02 0.56 16 42 H 0.10 2.40 7.23 -2.39 -0.02 2.38 16 43 H 0.10 1.70 6.40 -2.39 -0.02 1.69 16 44 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.11 2.25 7.87 -2.39 -0.02 2.23 16 46 H 0.35 10.71 7.89 -89.70 -0.71 10.00 16 47 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 48 H 0.10 3.13 8.13 -2.39 -0.02 3.11 16 49 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 50 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 51 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.09 1.92 6.92 -2.39 -0.02 1.90 16 Total: -1.00 -71.82 416.96 1.59 -70.23 By element: Atomic # 1 Polarization: 43.05 SS G_CDS: -0.53 Total: 42.52 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 7.12 Total: 8.42 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -6.94 Total: -116.18 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -0.09 Total: -49.76 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -71.82 1.59 -70.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571661238.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.040 kcal (2) G-P(sol) polarization free energy of solvation -71.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds