Wall clock time and date at job start Tue Mar 31 2020 20:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50707 * 119.99974 * 2 1 4 4 H 1.09001 * 109.46664 * 0.02562 * 3 2 1 5 5 C 1.52992 * 109.46966 * 239.99837 * 3 2 1 6 6 C 1.52997 * 109.47482 * 64.99950 * 5 3 2 7 7 C 1.52997 * 109.46925 * 119.99654 * 3 2 1 8 8 C 1.50710 * 109.47272 * 294.99958 * 7 3 2 9 9 O 1.21279 * 119.99512 * 0.02562 * 8 7 3 10 10 N 1.34772 * 119.99762 * 180.02562 * 8 7 3 11 11 C 1.46501 * 120.00438 * 0.02562 * 10 8 7 12 12 C 1.46506 * 119.99761 * 179.97438 * 10 8 7 13 13 C 1.53781 * 113.61578 * 217.49659 * 12 10 8 14 14 C 1.53778 * 87.08148 * 220.01735 * 13 12 10 15 15 N 1.46903 * 113.61126 * 139.98121 * 14 13 12 16 16 C 1.46893 * 110.99961 * 107.50632 * 15 14 13 17 17 C 1.50697 * 109.47190 * 180.02562 * 16 15 14 18 18 O 1.21297 * 119.99945 * 359.97438 * 17 16 15 19 19 N 1.34782 * 120.00165 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00205 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99798 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00230 * 180.02562 * 20 19 17 23 23 N 1.31416 * 120.00292 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99889 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47256 * 90.00166 * 24 22 20 26 26 H 1.48499 * 109.47310 * 210.00199 * 24 22 20 27 27 H 1.48495 * 109.47134 * 329.99784 * 24 22 20 28 28 C 1.53780 * 113.61086 * 120.00065 * 12 10 8 29 29 H 1.07999 * 119.99932 * 0.02562 * 1 2 3 30 30 H 1.07995 * 119.99880 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99932 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47103 * 304.99703 * 5 3 2 33 33 H 1.08998 * 109.46862 * 185.00515 * 5 3 2 34 34 H 1.09002 * 109.47153 * 59.99783 * 6 5 3 35 35 H 1.09001 * 109.46832 * 299.99974 * 6 5 3 36 36 H 1.09004 * 109.47261 * 179.97438 * 6 5 3 37 37 H 1.09001 * 109.47310 * 55.00154 * 7 3 2 38 38 H 1.09002 * 109.47223 * 175.00113 * 7 3 2 39 39 H 1.08993 * 109.47446 * 89.99530 * 11 10 8 40 40 H 1.09002 * 109.46830 * 210.00249 * 11 10 8 41 41 H 1.09000 * 109.46440 * 329.99458 * 11 10 8 42 42 H 1.09001 * 112.84817 * 348.80310 * 12 10 8 43 43 H 1.09001 * 113.61446 * 334.57089 * 13 12 10 44 44 H 1.09008 * 113.61161 * 105.46980 * 13 12 10 45 45 H 1.08994 * 113.61809 * 270.88829 * 14 13 12 46 46 H 1.00898 * 110.99744 * 343.54829 * 15 14 13 47 47 H 1.09003 * 109.47106 * 299.99730 * 16 15 14 48 48 H 1.09005 * 109.47512 * 59.99702 * 16 15 14 49 49 H 0.96994 * 119.99792 * 359.97438 * 19 17 16 50 50 H 0.96996 * 119.99802 * 179.97438 * 23 22 20 51 51 H 1.09003 * 113.61513 * 254.52767 * 28 12 10 52 52 H 1.08989 * 113.61668 * 25.43332 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0565 1.4307 -2.4953 7 6 2.9430 1.3862 1.2493 8 6 2.0696 1.4301 2.4767 9 8 0.8625 1.3991 2.3632 10 7 2.6299 1.5038 3.7001 11 6 4.0880 1.5418 3.8371 12 6 1.7808 1.5471 4.8933 13 6 2.3169 2.4732 5.9977 14 6 1.8721 1.3997 7.0048 15 7 2.8229 1.1959 8.1060 16 6 2.2994 1.7481 9.3625 17 6 3.3001 1.5214 10.4662 18 8 4.3462 0.9550 10.2295 19 7 3.0326 1.9480 11.7165 20 6 3.9427 1.7413 12.7208 21 1 4.8742 1.2370 12.5100 22 6 3.6667 2.1806 14.0097 23 7 4.5393 1.9829 14.9723 24 14 2.0552 3.0522 14.3744 25 1 1.0282 2.0521 14.7622 26 1 2.2540 4.0147 15.4876 27 1 1.6025 3.7827 13.1634 28 6 2.0228 0.3793 5.8641 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.5906 0.5105 -1.2950 33 1 3.5541 2.2878 -1.2054 34 1 1.4090 2.3063 -2.4494 35 1 1.4457 0.5290 -2.5389 36 1 2.6833 1.4888 -3.3852 37 1 3.5905 0.5106 1.2953 38 1 3.5540 2.2879 1.2057 39 1 4.4278 2.5773 3.8192 40 1 4.3763 1.0810 4.7819 41 1 4.5447 0.9952 3.0120 42 1 0.7288 1.7089 4.6584 43 1 3.3968 2.6169 5.9610 44 1 1.7670 3.4102 6.0869 45 1 0.8450 1.5220 7.3484 46 1 3.7236 1.5928 7.8840 47 1 2.1252 2.8177 9.2446 48 1 1.3616 1.2528 9.6143 49 1 2.1962 2.4012 11.9057 50 1 4.3467 2.2899 15.8720 51 1 1.2354 -0.3743 5.8456 52 1 3.0221 -0.0494 5.7909 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571661239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:58 Heat of formation + Delta-G solvation = -31.346579 kcal Electronic energy + Delta-G solvation = -28707.654618 eV Core-core repulsion = 24708.363210 eV Total energy + Delta-G solvation = -3999.291408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.70333 -39.14500 -38.24486 -36.92952 -35.26661 -34.05957 -33.04573 -32.04724 -31.65618 -30.58839 -27.56679 -26.87677 -25.82283 -25.47422 -24.02022 -22.66316 -21.94594 -20.21089 -19.84263 -19.36430 -19.09602 -18.27786 -17.36482 -16.66141 -16.12617 -15.88531 -15.63130 -15.17796 -15.03422 -14.87536 -14.81752 -14.31437 -14.02943 -13.82008 -13.76472 -13.31865 -13.15983 -13.14101 -12.81875 -12.68966 -12.56771 -12.43642 -12.33425 -12.19687 -12.01983 -11.80905 -11.69048 -11.54579 -11.22416 -11.17302 -11.13577 -11.02686 -10.80818 -10.75854 -10.60311 -10.01043 -9.98062 -9.58533 -9.34453 -8.82191 -8.58529 -8.20145 -8.11279 -6.32273 -3.83777 2.20888 2.44004 2.73233 3.01526 3.06318 3.14385 3.72689 4.08074 4.11633 4.16057 4.38156 4.43059 4.44781 4.48682 4.73302 4.75438 4.78925 4.86358 4.89516 4.95525 5.02446 5.07427 5.10646 5.21446 5.21902 5.30312 5.37865 5.42455 5.50182 5.53442 5.55099 5.57875 5.59744 5.64155 5.72034 5.73885 5.85242 5.86752 5.90430 5.92814 5.95183 6.04752 6.37642 6.51023 6.70321 7.11047 7.17900 7.54504 7.57613 7.98346 8.13238 8.58551 8.93722 9.41280 9.81364 10.80833 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.035914 B = 0.001626 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.449565 B =17219.091382 C =17539.204171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.153 4.153 3 C -0.045 4.045 4 H 0.080 0.920 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.134 4.134 8 C 0.512 3.488 9 O -0.533 6.533 10 N -0.606 5.606 11 C 0.073 3.927 12 C 0.122 3.878 13 C -0.179 4.179 14 C 0.072 3.928 15 N -0.654 5.654 16 C 0.047 3.953 17 C 0.449 3.551 18 O -0.566 6.566 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.119 0.881 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.137 4.137 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.352 0.648 47 H 0.045 0.955 48 H 0.088 0.912 49 H 0.371 0.629 50 H 0.273 0.727 51 H 0.072 0.928 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.305 1.512 -31.447 32.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C -0.064 4.064 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.209 4.209 7 C -0.174 4.174 8 C 0.301 3.699 9 O -0.409 6.409 10 N -0.339 5.339 11 C -0.070 4.070 12 C 0.018 3.982 13 C -0.220 4.220 14 C -0.040 4.040 15 N -0.285 5.285 16 C -0.086 4.086 17 C 0.235 3.765 18 O -0.448 6.448 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.177 4.177 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.136 0.864 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.117 0.883 46 H 0.172 0.828 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.365 0.495 -31.278 31.923 hybrid contribution -0.990 1.660 0.569 2.014 sum -7.355 2.155 -30.709 31.651 Atomic orbital electron populations 1.23694 0.95927 1.01303 0.99064 1.22618 0.95993 0.97022 1.01444 1.20171 0.96567 0.97107 0.92506 0.90148 1.21539 0.97859 1.01965 0.94010 1.21759 0.99835 1.02153 0.97113 1.21766 0.98734 1.04170 0.92687 1.20709 0.89076 0.75751 0.84409 1.90695 1.14817 1.49160 1.86266 1.47850 1.06949 1.73192 1.05872 1.21821 0.79640 1.01935 1.03651 1.22466 0.96104 0.97165 0.82463 1.24210 1.02138 0.98859 0.96745 1.22827 0.97086 0.94585 0.89517 1.60004 1.05181 1.62549 1.00778 1.21760 0.98523 0.97840 0.90459 1.19734 0.88822 0.84580 0.83367 1.90562 1.26884 1.45080 1.82262 1.42211 1.19068 1.53312 1.08384 1.19434 1.01077 1.36397 0.86536 0.86290 1.25036 0.97851 0.97830 0.95400 1.69623 1.34791 1.46102 1.01600 0.86668 0.83735 0.80171 0.78783 1.19580 1.20188 1.19544 1.23538 1.03200 0.97085 0.93831 0.88682 0.89215 0.88124 0.91806 0.91832 0.92827 0.92373 0.92886 0.88838 0.88875 0.92452 0.90248 0.90923 0.86418 0.89178 0.91050 0.88315 0.82754 0.93669 0.89413 0.79678 0.91609 0.90936 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 13.22 29.01 0.38 -1.09 16 2 C -0.15 -1.26 6.76 -36.02 -0.24 -1.50 16 3 C -0.04 -0.32 1.82 -91.77 -0.17 -0.49 16 4 H 0.08 0.70 7.60 -51.93 -0.39 0.30 16 5 C -0.12 -0.63 5.39 -26.74 -0.14 -0.77 16 6 C -0.15 -0.84 9.73 37.16 0.36 -0.48 16 7 C -0.13 -0.88 3.72 -27.88 -0.10 -0.99 16 8 C 0.51 5.08 7.42 -10.98 -0.08 5.00 16 9 O -0.53 -7.00 13.65 5.56 0.08 -6.92 16 10 N -0.61 -5.44 3.08 -173.00 -0.53 -5.98 16 11 C 0.07 0.47 8.84 59.85 0.53 1.00 16 12 C 0.12 1.21 4.21 -67.11 -0.28 0.93 16 13 C -0.18 -1.71 7.12 -25.92 -0.18 -1.89 16 14 C 0.07 0.80 4.18 -66.90 -0.28 0.52 16 15 N -0.65 -9.65 6.24 -107.13 -0.67 -10.32 16 16 C 0.05 0.76 6.01 -4.98 -0.03 0.73 16 17 C 0.45 10.07 7.82 -10.98 -0.09 9.99 16 18 O -0.57 -15.03 15.78 5.54 0.09 -14.94 16 19 N -0.59 -13.97 5.09 -10.96 -0.06 -14.03 16 20 C -0.31 -8.63 10.16 -14.94 -0.15 -8.78 16 21 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -25.67 13.96 55.50 0.77 -24.89 16 24 Si 0.88 19.29 27.74 -169.99 -4.71 14.58 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 28 C -0.14 -1.45 7.42 -25.92 -0.19 -1.64 16 29 H 0.09 0.92 7.83 -52.49 -0.41 0.51 16 30 H 0.09 0.74 8.06 -52.49 -0.42 0.31 16 31 H 0.10 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.35 7.38 -51.93 -0.38 -0.03 16 36 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.09 0.50 7.40 -51.93 -0.38 0.11 16 38 H 0.09 0.46 8.11 -51.93 -0.42 0.04 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.55 6.34 -51.93 -0.33 0.22 16 41 H 0.07 0.33 6.44 -51.93 -0.33 0.00 16 42 H 0.12 1.31 7.23 -51.93 -0.38 0.94 16 43 H 0.09 0.84 6.40 -51.93 -0.33 0.50 16 44 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 45 H 0.10 1.03 7.87 -51.93 -0.41 0.63 16 46 H 0.35 5.31 7.89 -39.29 -0.31 5.00 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.09 1.28 8.13 -51.93 -0.42 0.85 16 49 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 50 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 51 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.09 1.00 6.92 -51.94 -0.36 0.64 16 LS Contribution 413.84 15.07 6.24 6.24 Total: -1.00 -33.90 413.84 -8.45 -42.35 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -8.89 Total: 12.34 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -0.77 Total: 1.57 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.48 Total: -55.21 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: 0.16 Total: -21.87 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.90 -8.45 -42.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571661239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.003 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds