Wall clock time and date at job start Tue Mar 31 2020 20:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46885 * 2 1 4 4 H 1.09000 * 109.87532 * 303.77975 * 3 2 1 5 5 C 1.54327 * 109.88078 * 182.60691 * 3 2 1 6 6 H 1.08994 * 110.71918 * 336.92658 * 5 3 2 7 7 N 1.46499 * 110.72166 * 100.02843 * 5 3 2 8 8 C 1.34773 * 119.99780 * 204.99911 * 7 5 3 9 9 O 1.21282 * 120.00464 * 359.97438 * 8 7 5 10 10 C 1.50699 * 120.00095 * 179.97438 * 8 7 5 11 11 C 1.52995 * 109.47451 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47270 * 180.02562 * 11 10 8 13 13 N 1.46501 * 109.46823 * 180.02562 * 12 11 10 14 14 C 1.34786 * 119.99604 * 179.97438 * 13 12 11 15 15 O 1.21282 * 119.99734 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99950 * 179.97438 * 14 13 12 17 17 C 1.52993 * 117.49845 * 248.62223 * 16 14 13 18 18 C 1.52999 * 60.00198 * 252.51022 * 17 16 14 19 19 C 1.55163 * 102.93613 * 218.39021 * 5 3 2 20 20 C 1.54683 * 101.68128 * 35.33709 * 19 5 3 21 21 N 1.47021 * 109.88192 * 64.79750 * 3 2 1 22 22 C 1.36930 * 125.64748 * 298.32003 * 21 3 2 23 23 H 1.08004 * 120.00088 * 336.90674 * 22 21 3 24 24 C 1.38819 * 119.99944 * 156.90118 * 22 21 3 25 25 N 1.31607 * 119.99897 * 336.38446 * 24 22 21 26 26 Si 1.86804 * 119.99837 * 156.38358 * 24 22 21 27 27 H 1.48504 * 109.46931 * 270.00353 * 26 24 22 28 28 H 1.48496 * 109.46894 * 150.00176 * 26 24 22 29 29 H 1.48501 * 109.47282 * 30.00091 * 26 24 22 30 30 H 1.08994 * 109.47498 * 52.01350 * 1 2 3 31 31 H 1.09004 * 109.46650 * 172.01103 * 1 2 3 32 32 H 1.09000 * 109.46908 * 292.00834 * 1 2 3 33 33 H 1.09001 * 109.47500 * 240.00422 * 2 1 3 34 34 H 1.09001 * 109.47823 * 120.00083 * 2 1 3 35 35 H 0.96998 * 119.99926 * 24.99908 * 7 5 3 36 36 H 1.09005 * 109.46802 * 300.00011 * 10 8 7 37 37 H 1.09005 * 109.47087 * 59.99736 * 10 8 7 38 38 H 1.09005 * 109.47070 * 299.99778 * 11 10 8 39 39 H 1.08992 * 109.47528 * 59.99678 * 11 10 8 40 40 H 1.09005 * 109.46594 * 299.99704 * 12 11 10 41 41 H 1.08992 * 109.47407 * 59.99237 * 12 11 10 42 42 H 0.96992 * 120.00468 * 359.97438 * 13 12 11 43 43 H 1.08997 * 115.54548 * 34.33473 * 16 14 13 44 44 H 1.08998 * 117.50024 * 0.02562 * 17 16 14 45 45 H 1.09000 * 117.49645 * 145.02426 * 17 16 14 46 46 H 1.09003 * 117.50121 * 252.51351 * 18 17 16 47 47 H 1.09000 * 117.49323 * 107.48703 * 18 17 16 48 48 H 1.09004 * 111.00047 * 153.57830 * 19 5 3 49 49 H 1.08993 * 111.00580 * 277.38303 * 19 5 3 50 50 H 1.08999 * 110.39028 * 204.36342 * 20 19 5 51 51 H 1.09005 * 110.23844 * 82.10928 * 20 19 5 52 52 H 0.96999 * 120.00705 * 353.59077 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6261 1.9819 -0.8520 5 6 3.5817 1.4542 -0.0660 6 1 3.9905 0.5132 0.3021 7 7 4.0401 1.7171 -1.4324 8 6 5.2553 1.2903 -1.8293 9 8 5.9696 0.6891 -1.0552 10 6 5.7266 1.5603 -3.2350 11 6 7.1272 0.9745 -3.4247 12 6 7.6060 1.2491 -4.8517 13 7 8.9469 0.6877 -5.0334 14 6 9.5732 0.8093 -6.2207 15 8 9.0268 1.3840 -7.1383 16 6 10.9527 0.2323 -6.4075 17 6 12.1119 1.2154 -6.5826 18 6 11.6103 0.4033 -7.7783 19 6 3.9609 2.6277 0.8756 20 6 2.8733 2.5152 1.9698 21 7 1.6515 2.1102 1.2510 22 6 0.3675 2.3254 1.6753 23 1 -0.4409 2.3498 0.9595 24 6 0.1049 2.5123 3.0256 25 7 0.9384 2.0425 3.9292 26 14 -1.4317 3.4305 3.5599 27 1 -1.1281 4.8798 3.6727 28 1 -1.8832 2.9152 4.8773 29 1 -2.5051 3.2265 2.5542 30 1 -0.3634 0.6325 -0.8099 31 1 -0.3633 -1.0178 -0.1428 32 1 -0.3633 0.3851 0.9528 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.4690 2.1983 -2.0514 36 1 5.0403 1.0966 -3.9436 37 1 5.7558 2.6361 -3.4082 38 1 7.8138 1.4378 -2.7160 39 1 7.0977 -0.1012 -3.2516 40 1 6.9195 0.7862 -5.5606 41 1 7.6356 2.3249 -5.0243 42 1 9.3840 0.2284 -4.2993 43 1 11.1533 -0.6914 -5.8647 44 1 11.8768 2.2795 -6.5623 45 1 13.0755 0.9386 -6.1549 46 1 12.2439 -0.4078 -8.1373 47 1 11.0451 0.9332 -8.5450 48 1 4.9565 2.4853 1.2959 49 1 3.8915 3.5834 0.3563 50 1 2.7246 3.4785 2.4578 51 1 3.1517 1.7571 2.7017 52 1 1.6856 1.4868 3.6576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656714111.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:11 Heat of formation + Delta-G solvation = -45.047141 kcal Electronic energy + Delta-G solvation = -28814.823989 eV Core-core repulsion = 24814.938481 eV Total energy + Delta-G solvation = -3999.885509 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.33075 -39.86941 -38.05113 -36.87707 -35.71534 -34.25964 -33.02026 -32.62392 -31.87553 -28.86415 -27.85672 -26.68506 -24.74619 -24.08023 -22.89745 -22.27139 -21.76146 -20.79983 -20.32391 -20.21216 -19.41842 -17.85117 -17.44208 -17.17045 -16.38140 -16.27656 -15.93055 -15.59714 -15.03306 -14.69168 -14.49376 -14.20349 -14.00245 -13.69611 -13.52667 -13.19778 -12.97547 -12.92402 -12.65426 -12.49584 -12.44120 -12.03521 -12.02041 -11.81732 -11.66013 -11.24387 -11.12799 -11.10572 -10.98598 -10.94364 -10.77409 -10.49947 -10.28194 -10.24811 -10.13673 -10.07995 -9.86416 -9.73141 -9.46106 -9.42460 -8.76319 -8.44232 -6.94780 -6.05672 -3.22019 2.11082 2.68077 2.68407 3.28021 3.40092 3.48800 3.50653 3.66681 4.21704 4.32116 4.40745 4.45639 4.56569 4.64103 4.66815 4.68091 4.99368 5.12261 5.14093 5.15634 5.25353 5.31461 5.31831 5.35069 5.37045 5.40612 5.46358 5.65491 5.67764 5.75920 5.85895 5.89629 5.94364 6.03873 6.06097 6.12542 6.26197 6.36580 6.46893 6.54433 6.64265 6.75805 6.93445 7.01838 7.07793 7.10112 7.30502 7.61771 7.82214 7.84344 8.30279 8.46981 9.00632 9.78066 10.34782 11.22728 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033100 B = 0.001636 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.711452 B =17107.358355 C =17380.778059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.157 3.843 4 H 0.036 0.964 5 C 0.134 3.866 6 H 0.094 0.906 7 N -0.716 5.716 8 C 0.512 3.488 9 O -0.545 6.545 10 C -0.138 4.138 11 C -0.115 4.115 12 C 0.118 3.882 13 N -0.726 5.726 14 C 0.541 3.459 15 O -0.542 6.542 16 C -0.197 4.197 17 C -0.152 4.152 18 C -0.148 4.148 19 C -0.145 4.145 20 C 0.144 3.856 21 N -0.591 5.591 22 C -0.325 4.325 23 H 0.066 0.934 24 C -0.025 4.025 25 N -0.918 5.918 26 Si 1.068 2.932 27 H -0.294 1.294 28 H -0.290 1.290 29 H -0.292 1.292 30 H 0.038 0.962 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.055 0.945 35 H 0.399 0.601 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.404 0.596 43 H 0.124 0.876 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.051 0.949 51 H 0.030 0.970 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.605 -2.803 -19.256 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.050 3.950 4 H 0.054 0.946 5 C 0.029 3.971 6 H 0.112 0.888 7 N -0.366 5.366 8 C 0.298 3.702 9 O -0.423 6.423 10 C -0.179 4.179 11 C -0.154 4.154 12 C -0.006 4.006 13 N -0.377 5.377 14 C 0.328 3.672 15 O -0.419 6.419 16 C -0.218 4.218 17 C -0.190 4.190 18 C -0.185 4.185 19 C -0.184 4.184 20 C 0.018 3.982 21 N -0.317 5.317 22 C -0.453 4.453 23 H 0.084 0.916 24 C -0.228 4.228 25 N -0.559 5.559 26 Si 0.898 3.102 27 H -0.221 1.221 28 H -0.216 1.216 29 H -0.219 1.219 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.233 0.767 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.238 0.762 43 H 0.142 0.858 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.126 0.874 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.070 0.930 51 H 0.047 0.953 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.761 -2.196 -17.995 24.690 hybrid contribution 0.623 -0.727 -1.179 1.519 sum 17.385 -2.923 -19.174 26.046 Atomic orbital electron populations 1.21914 0.95647 0.98884 1.04255 1.21882 0.97083 0.97626 0.99615 1.21176 0.89751 0.92279 0.91820 0.94604 1.22105 0.95259 0.99153 0.80545 0.88769 1.46075 1.17741 1.58189 1.14627 1.20538 0.81484 0.78691 0.89525 1.90700 1.54746 1.41227 1.55579 1.21549 0.97869 1.03535 0.94912 1.21505 0.95867 1.02818 0.95164 1.21409 0.83043 0.99159 0.96965 1.45922 1.18497 1.59173 1.14097 1.19687 0.86342 0.79051 0.82133 1.90705 1.67167 1.43009 1.41060 1.22208 0.92081 1.02812 1.04741 1.22948 0.96421 0.97506 1.02118 1.22960 1.01929 1.02837 0.90802 1.23162 0.99357 0.97738 0.98172 1.21509 0.85301 0.98657 0.92736 1.44495 1.01920 1.64879 1.20432 1.19704 0.83264 1.49113 0.93229 0.91605 1.25797 1.04288 1.00958 0.91730 1.70722 1.17316 1.32478 1.35347 0.83461 0.74862 0.76333 0.75515 1.22127 1.21628 1.21868 0.94279 0.95223 0.88891 0.94324 0.92630 0.76673 0.88574 0.88565 0.90329 0.90340 0.91253 0.91277 0.76184 0.85762 0.88210 0.87676 0.87845 0.87379 0.91662 0.91669 0.93031 0.95260 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.89 37.16 0.33 -2.56 16 2 C -0.12 -2.32 5.47 -26.73 -0.15 -2.47 16 3 C 0.16 3.05 3.01 -66.95 -0.20 2.84 16 4 H 0.04 0.69 7.72 -51.93 -0.40 0.29 16 5 C 0.13 2.31 2.85 -66.09 -0.19 2.12 16 6 H 0.09 1.79 7.25 -51.93 -0.38 1.41 16 7 N -0.72 -9.51 5.18 -52.03 -0.27 -9.78 16 8 C 0.51 6.61 7.83 -10.99 -0.09 6.52 16 9 O -0.54 -9.17 15.63 5.56 0.09 -9.08 16 10 C -0.14 -1.14 5.70 -27.89 -0.16 -1.30 16 11 C -0.12 -0.92 4.62 -26.73 -0.12 -1.04 16 12 C 0.12 0.91 5.67 -4.04 -0.02 0.89 16 13 N -0.73 -5.40 5.56 -60.29 -0.33 -5.73 16 14 C 0.54 5.05 7.61 -10.98 -0.08 4.97 16 15 O -0.54 -7.18 16.26 5.56 0.09 -7.09 16 16 C -0.20 -1.25 6.19 -91.78 -0.57 -1.82 16 17 C -0.15 -0.82 10.23 -26.73 -0.27 -1.09 16 18 C -0.15 -0.89 10.04 -26.73 -0.27 -1.16 16 19 C -0.14 -2.64 6.76 -24.70 -0.17 -2.81 16 20 C 0.14 3.25 5.39 -2.65 -0.01 3.24 16 21 N -0.59 -13.96 2.96 -162.70 -0.48 -14.44 16 22 C -0.33 -8.51 7.32 -15.06 -0.11 -8.62 16 23 H 0.07 1.72 7.05 -52.48 -0.37 1.35 16 24 C -0.03 -0.69 5.20 -17.43 -0.09 -0.78 16 25 N -0.92 -26.92 13.04 55.49 0.72 -26.20 16 26 Si 1.07 24.72 29.98 -169.99 -5.10 19.63 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 30 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 2.12 5.46 -51.93 -0.28 1.83 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.40 4.33 8.37 -40.82 -0.34 3.98 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.40 2.10 8.47 -40.82 -0.35 1.75 16 43 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.11 0.83 7.67 -51.93 -0.40 0.43 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.05 1.27 8.13 -51.93 -0.42 0.84 16 51 H 0.03 0.72 6.67 -51.93 -0.35 0.37 16 52 H 0.27 7.98 5.93 -40.82 -0.24 7.74 16 LS Contribution 415.60 15.07 6.26 6.26 Total: -1.00 -33.71 415.60 -10.28 -43.99 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -9.08 Total: 5.53 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -2.17 Total: -3.08 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.36 Total: -56.16 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.18 Total: -16.17 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.10 Total: 19.63 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.71 -10.28 -43.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656714111.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.059 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds