Wall clock time and date at job start Tue Mar 31 2020 20:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46885 * 2 1 4 4 H 1.09000 * 109.87532 * 303.77975 * 3 2 1 5 5 C 1.54327 * 109.88078 * 182.60691 * 3 2 1 6 6 H 1.08994 * 110.71918 * 336.92658 * 5 3 2 7 7 N 1.46499 * 110.72166 * 100.02843 * 5 3 2 8 8 C 1.34773 * 119.99780 * 204.99911 * 7 5 3 9 9 O 1.21282 * 120.00464 * 359.97438 * 8 7 5 10 10 C 1.50699 * 120.00095 * 179.97438 * 8 7 5 11 11 C 1.52995 * 109.47451 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47270 * 180.02562 * 11 10 8 13 13 N 1.46501 * 109.46823 * 180.02562 * 12 11 10 14 14 C 1.34786 * 119.99604 * 179.97438 * 13 12 11 15 15 O 1.21282 * 119.99734 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99950 * 179.97438 * 14 13 12 17 17 C 1.52993 * 117.49845 * 248.62223 * 16 14 13 18 18 C 1.52999 * 60.00198 * 252.51022 * 17 16 14 19 19 C 1.55163 * 102.93613 * 218.39021 * 5 3 2 20 20 C 1.54683 * 101.68128 * 35.33709 * 19 5 3 21 21 N 1.47021 * 109.88192 * 64.79750 * 3 2 1 22 22 C 1.36930 * 125.64748 * 298.32003 * 21 3 2 23 23 H 1.08004 * 120.00088 * 336.90674 * 22 21 3 24 24 C 1.38819 * 119.99944 * 156.90118 * 22 21 3 25 25 N 1.31607 * 119.99897 * 336.38446 * 24 22 21 26 26 Si 1.86804 * 119.99837 * 156.38358 * 24 22 21 27 27 H 1.48504 * 109.46931 * 270.00353 * 26 24 22 28 28 H 1.48496 * 109.46894 * 150.00176 * 26 24 22 29 29 H 1.48501 * 109.47282 * 30.00091 * 26 24 22 30 30 H 1.08994 * 109.47498 * 52.01350 * 1 2 3 31 31 H 1.09004 * 109.46650 * 172.01103 * 1 2 3 32 32 H 1.09000 * 109.46908 * 292.00834 * 1 2 3 33 33 H 1.09001 * 109.47500 * 240.00422 * 2 1 3 34 34 H 1.09001 * 109.47823 * 120.00083 * 2 1 3 35 35 H 0.96998 * 119.99926 * 24.99908 * 7 5 3 36 36 H 1.09005 * 109.46802 * 300.00011 * 10 8 7 37 37 H 1.09005 * 109.47087 * 59.99736 * 10 8 7 38 38 H 1.09005 * 109.47070 * 299.99778 * 11 10 8 39 39 H 1.08992 * 109.47528 * 59.99678 * 11 10 8 40 40 H 1.09005 * 109.46594 * 299.99704 * 12 11 10 41 41 H 1.08992 * 109.47407 * 59.99237 * 12 11 10 42 42 H 0.96992 * 120.00468 * 359.97438 * 13 12 11 43 43 H 1.08997 * 115.54548 * 34.33473 * 16 14 13 44 44 H 1.08998 * 117.50024 * 0.02562 * 17 16 14 45 45 H 1.09000 * 117.49645 * 145.02426 * 17 16 14 46 46 H 1.09003 * 117.50121 * 252.51351 * 18 17 16 47 47 H 1.09000 * 117.49323 * 107.48703 * 18 17 16 48 48 H 1.09004 * 111.00047 * 153.57830 * 19 5 3 49 49 H 1.08993 * 111.00580 * 277.38303 * 19 5 3 50 50 H 1.08999 * 110.39028 * 204.36342 * 20 19 5 51 51 H 1.09005 * 110.23844 * 82.10928 * 20 19 5 52 52 H 0.96999 * 120.00705 * 353.59077 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6261 1.9819 -0.8520 5 6 3.5817 1.4542 -0.0660 6 1 3.9905 0.5132 0.3021 7 7 4.0401 1.7171 -1.4324 8 6 5.2553 1.2903 -1.8293 9 8 5.9696 0.6891 -1.0552 10 6 5.7266 1.5603 -3.2350 11 6 7.1272 0.9745 -3.4247 12 6 7.6060 1.2491 -4.8517 13 7 8.9469 0.6877 -5.0334 14 6 9.5732 0.8093 -6.2207 15 8 9.0268 1.3840 -7.1383 16 6 10.9527 0.2323 -6.4075 17 6 12.1119 1.2154 -6.5826 18 6 11.6103 0.4033 -7.7783 19 6 3.9609 2.6277 0.8756 20 6 2.8733 2.5152 1.9698 21 7 1.6515 2.1102 1.2510 22 6 0.3675 2.3254 1.6753 23 1 -0.4409 2.3498 0.9595 24 6 0.1049 2.5123 3.0256 25 7 0.9384 2.0425 3.9292 26 14 -1.4317 3.4305 3.5599 27 1 -1.1281 4.8798 3.6727 28 1 -1.8832 2.9152 4.8773 29 1 -2.5051 3.2265 2.5542 30 1 -0.3634 0.6325 -0.8099 31 1 -0.3633 -1.0178 -0.1428 32 1 -0.3633 0.3851 0.9528 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.4690 2.1983 -2.0514 36 1 5.0403 1.0966 -3.9436 37 1 5.7558 2.6361 -3.4082 38 1 7.8138 1.4378 -2.7160 39 1 7.0977 -0.1012 -3.2516 40 1 6.9195 0.7862 -5.5606 41 1 7.6356 2.3249 -5.0243 42 1 9.3840 0.2284 -4.2993 43 1 11.1533 -0.6914 -5.8647 44 1 11.8768 2.2795 -6.5623 45 1 13.0755 0.9386 -6.1549 46 1 12.2439 -0.4078 -8.1373 47 1 11.0451 0.9332 -8.5450 48 1 4.9565 2.4853 1.2959 49 1 3.8915 3.5834 0.3563 50 1 2.7246 3.4785 2.4578 51 1 3.1517 1.7571 2.7017 52 1 1.6856 1.4868 3.6576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656714111.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:10 Heat of formation + Delta-G solvation = -67.817767 kcal Electronic energy + Delta-G solvation = -28815.811398 eV Core-core repulsion = 24814.938481 eV Total energy + Delta-G solvation = -4000.872917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.17201 -40.91517 -39.54173 -37.42511 -36.45316 -35.74215 -34.32370 -33.88580 -33.39611 -30.53909 -29.00308 -27.99062 -26.32139 -25.00046 -23.57125 -23.31406 -22.89410 -21.99658 -21.67970 -21.18720 -20.73803 -19.34247 -18.44826 -18.16503 -17.55815 -17.07983 -16.86780 -16.29584 -16.11229 -15.95082 -15.72747 -15.50544 -15.24713 -15.01364 -14.87309 -14.65114 -14.45763 -14.05388 -13.78826 -13.54077 -13.36912 -13.26336 -13.14662 -12.84133 -12.63738 -12.53318 -12.49554 -12.44633 -12.16157 -11.89824 -11.88292 -11.82685 -11.73337 -11.55903 -11.55314 -11.45623 -11.36428 -11.01012 -10.85005 -10.46559 -10.13073 -10.03195 -8.94118 -8.16890 -5.30528 1.45304 1.60027 1.66706 1.67297 1.83282 1.98833 2.29975 2.68833 2.92233 3.27794 3.44574 3.66555 3.74620 3.75437 3.77120 3.87037 3.97702 4.01154 4.02199 4.11055 4.21720 4.26602 4.32604 4.38379 4.49088 4.55313 4.56130 4.64843 4.69541 4.73668 4.73968 4.88439 4.92007 4.93934 5.00679 5.02900 5.05858 5.12123 5.15469 5.21068 5.22373 5.23941 5.34657 5.43305 5.58617 5.63723 5.82299 6.39329 6.50836 6.58891 6.96663 7.20101 7.28713 7.75715 8.35709 9.10378 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033100 B = 0.001636 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.711452 B =17107.358355 C =17380.778059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C 0.155 3.845 4 H 0.053 0.947 5 C 0.151 3.849 6 H 0.076 0.924 7 N -0.707 5.707 8 C 0.511 3.489 9 O -0.586 6.586 10 C -0.129 4.129 11 C -0.105 4.105 12 C 0.123 3.877 13 N -0.717 5.717 14 C 0.534 3.466 15 O -0.589 6.589 16 C -0.202 4.202 17 C -0.143 4.143 18 C -0.154 4.154 19 C -0.129 4.129 20 C 0.148 3.852 21 N -0.608 5.608 22 C -0.311 4.311 23 H 0.068 0.932 24 C -0.083 4.083 25 N -0.955 5.955 26 Si 1.114 2.886 27 H -0.288 1.288 28 H -0.300 1.300 29 H -0.269 1.269 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.028 0.972 35 H 0.415 0.585 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.416 0.584 43 H 0.151 0.849 44 H 0.087 0.913 45 H 0.130 0.870 46 H 0.125 0.875 47 H 0.085 0.915 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.023 0.977 51 H 0.001 0.999 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.213 -2.831 -21.806 28.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C 0.049 3.951 4 H 0.071 0.929 5 C 0.045 3.955 6 H 0.094 0.906 7 N -0.359 5.359 8 C 0.300 3.700 9 O -0.466 6.466 10 C -0.169 4.169 11 C -0.143 4.143 12 C -0.001 4.001 13 N -0.369 5.369 14 C 0.322 3.678 15 O -0.470 6.470 16 C -0.222 4.222 17 C -0.181 4.181 18 C -0.192 4.192 19 C -0.168 4.168 20 C 0.022 3.978 21 N -0.334 5.334 22 C -0.440 4.440 23 H 0.086 0.914 24 C -0.279 4.279 25 N -0.599 5.599 26 Si 0.940 3.060 27 H -0.215 1.215 28 H -0.227 1.227 29 H -0.194 1.194 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.252 0.748 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.252 0.748 43 H 0.168 0.832 44 H 0.105 0.895 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.103 0.897 48 H 0.089 0.911 49 H 0.099 0.901 50 H 0.042 0.958 51 H 0.019 0.981 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.370 -2.228 -20.587 27.028 hybrid contribution 0.464 -0.767 -0.453 1.004 sum 17.834 -2.995 -21.040 27.744 Atomic orbital electron populations 1.21793 0.95687 1.00232 1.02387 1.21824 0.96959 0.97262 0.99762 1.21330 0.91345 0.92304 0.90165 0.92893 1.21627 0.93560 0.97740 0.82620 0.90627 1.45896 1.18394 1.58494 1.13067 1.21339 0.80524 0.77287 0.90894 1.90696 1.55762 1.42968 1.57175 1.21581 0.98102 1.05367 0.91817 1.21381 0.95735 1.02294 0.94911 1.21326 0.83190 0.98998 0.96603 1.45905 1.18373 1.58526 1.14050 1.20242 0.87307 0.78396 0.81823 1.90680 1.68500 1.45251 1.42574 1.22306 0.90588 1.03981 1.05369 1.23029 0.96979 0.96666 1.01413 1.23008 1.02152 1.03621 0.90385 1.23009 0.97838 0.99051 0.96934 1.21339 0.86694 0.96192 0.93585 1.44720 1.01487 1.65724 1.21516 1.19917 0.84415 1.46630 0.93062 0.91391 1.27024 1.06376 1.02046 0.92463 1.70839 1.18318 1.34739 1.35957 0.82841 0.72671 0.75327 0.75184 1.21538 1.22702 1.19373 0.92969 0.93168 0.92857 0.91201 0.95323 0.74752 0.86025 0.86134 0.91083 0.90996 0.91436 0.91535 0.74785 0.83173 0.89467 0.85184 0.85650 0.89671 0.91099 0.90134 0.95827 0.98104 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 8.89 71.98 0.64 -4.69 16 2 C -0.12 -4.35 5.47 30.59 0.17 -4.18 16 3 C 0.16 5.80 3.01 45.34 0.14 5.93 16 4 H 0.05 1.85 7.72 -2.39 -0.02 1.83 16 5 C 0.15 4.99 2.85 46.18 0.13 5.12 16 6 H 0.08 2.84 7.25 -2.39 -0.02 2.83 16 7 N -0.71 -16.71 5.18 -436.91 -2.26 -18.97 16 8 C 0.51 11.84 7.83 87.66 0.69 12.53 16 9 O -0.59 -18.86 15.63 -3.04 -0.05 -18.91 16 10 C -0.13 -1.67 5.70 29.85 0.17 -1.50 16 11 C -0.10 -1.43 4.62 30.59 0.14 -1.29 16 12 C 0.12 1.66 5.67 86.38 0.49 2.15 16 13 N -0.72 -9.54 5.56 -463.04 -2.57 -12.11 16 14 C 0.53 9.46 7.61 87.65 0.67 10.13 16 15 O -0.59 -15.61 16.26 -3.03 -0.05 -15.66 16 16 C -0.20 -2.20 6.19 -11.54 -0.07 -2.27 16 17 C -0.14 -1.29 10.23 30.59 0.31 -0.97 16 18 C -0.15 -1.67 10.04 30.59 0.31 -1.37 16 19 C -0.13 -4.62 6.76 31.91 0.22 -4.41 16 20 C 0.15 6.92 5.39 86.78 0.47 7.38 16 21 N -0.61 -28.98 2.96 -668.68 -1.98 -30.97 16 22 C -0.31 -16.43 7.32 84.04 0.62 -15.82 16 23 H 0.07 3.52 7.05 -2.91 -0.02 3.50 16 24 C -0.08 -4.66 5.20 84.87 0.44 -4.22 16 25 N -0.95 -58.36 13.04 21.65 0.28 -58.08 16 26 Si 1.11 50.51 29.98 68.60 2.06 52.56 16 27 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 28 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 29 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 30 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 31 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.05 2.41 5.46 -2.39 -0.01 2.40 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.42 7.33 8.37 -92.71 -0.78 6.56 16 36 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.07 1.10 8.10 -2.38 -0.02 1.08 16 39 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 40 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.42 3.51 8.47 -92.71 -0.79 2.72 16 43 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.13 0.76 8.14 -2.39 -0.02 0.75 16 47 H 0.08 1.33 7.67 -2.39 -0.02 1.31 16 48 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 49 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 50 H 0.02 1.20 8.13 -2.39 -0.02 1.18 16 51 H 0.00 0.06 6.67 -2.38 -0.02 0.05 16 52 H 0.25 15.90 5.93 -92.71 -0.55 15.35 16 Total: -1.00 -77.05 415.60 0.52 -76.53 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -0.42 Total: 23.08 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 5.52 Total: 2.52 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -6.53 Total: -120.13 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.10 Total: -34.57 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.06 Total: 52.56 kcal Total: -77.05 0.52 -76.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656714111.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.715 kcal (2) G-P(sol) polarization free energy of solvation -77.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds