Wall clock time and date at job start Tue Mar 31 2020 19:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47005 * 2 1 4 4 H 1.08996 * 115.55849 * 29.31653 * 3 2 1 5 5 C 1.52999 * 117.49650 * 243.62061 * 3 2 1 6 6 C 1.52996 * 117.49842 * 174.99815 * 3 2 1 7 7 H 1.09011 * 117.51851 * 0.02562 * 6 3 2 8 8 C 1.50694 * 117.50228 * 214.98150 * 6 3 2 9 9 O 1.21283 * 119.99782 * 359.97438 * 8 6 3 10 10 N 1.34775 * 120.00582 * 179.97438 * 8 6 3 11 11 C 1.46502 * 119.99472 * 359.97438 * 10 8 6 12 12 C 1.46497 * 120.00464 * 179.97438 * 10 8 6 13 13 C 1.53127 * 109.51980 * 119.99754 * 12 10 8 14 14 C 1.53035 * 109.27723 * 177.56171 * 13 12 10 15 15 N 1.46853 * 109.52287 * 300.82196 * 14 13 12 16 16 C 1.46898 * 110.99552 * 185.83671 * 15 14 13 17 17 C 1.50706 * 109.46984 * 170.00269 * 16 15 14 18 18 O 1.21295 * 119.99863 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00080 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99873 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99509 * 359.71860 * 20 19 17 22 22 C 1.38950 * 120.00048 * 179.72298 * 20 19 17 23 23 N 1.31404 * 119.99928 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99705 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47292 * 90.00321 * 24 22 20 26 26 H 1.48504 * 109.46709 * 209.99863 * 24 22 20 27 27 H 1.48496 * 109.47395 * 329.99874 * 24 22 20 28 28 C 1.46846 * 111.19425 * 61.74414 * 15 14 13 29 29 C 1.53032 * 109.52664 * 298.25388 * 28 15 14 30 30 H 1.09009 * 109.47133 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47351 * 299.99647 * 1 2 3 32 32 H 1.09002 * 109.47338 * 60.00264 * 1 2 3 33 33 H 1.08999 * 109.47078 * 239.99972 * 2 1 3 34 34 H 1.08998 * 109.47272 * 120.00251 * 2 1 3 35 35 H 1.08998 * 117.49313 * 145.02335 * 5 3 2 36 36 H 1.08995 * 117.52031 * 359.97438 * 5 3 2 37 37 H 1.08998 * 109.47094 * 269.99867 * 11 10 8 38 38 H 1.09000 * 109.47454 * 30.00219 * 11 10 8 39 39 H 1.09007 * 109.47221 * 149.99932 * 11 10 8 40 40 H 1.09001 * 109.52056 * 359.87826 * 12 10 8 41 41 H 1.09001 * 109.49768 * 57.62339 * 13 12 10 42 42 H 1.09000 * 109.53796 * 297.52476 * 13 12 10 43 43 H 1.09003 * 109.46463 * 180.80895 * 14 13 12 44 44 H 1.08996 * 109.45506 * 60.83316 * 14 13 12 45 45 H 1.09004 * 109.47320 * 50.00673 * 16 15 14 46 46 H 1.09001 * 109.47291 * 289.99970 * 16 15 14 47 47 H 0.96996 * 119.99858 * 359.72084 * 19 17 16 48 48 H 0.96999 * 119.99865 * 179.97438 * 23 22 20 49 49 H 1.09007 * 109.46593 * 58.27364 * 28 15 14 50 50 H 1.09008 * 109.45914 * 178.23805 * 28 15 14 51 51 H 1.09001 * 109.50243 * 299.24173 * 29 28 15 52 52 H 1.08992 * 109.54075 * 179.14185 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4815 5 6 2.8439 1.9075 -1.2158 6 6 3.5501 1.6579 0.1183 7 1 4.1806 0.7721 0.1958 8 6 4.0228 2.8620 0.8915 9 8 3.2157 3.6169 1.3911 10 7 5.3423 3.1000 1.0277 11 6 6.3172 2.1877 0.4246 12 6 5.8018 4.2708 1.7788 13 6 6.6615 3.8150 2.9612 14 6 7.1884 5.0437 3.7060 15 7 7.9840 5.8697 2.7889 16 6 8.6202 6.9851 3.5025 17 6 9.6147 7.6608 2.5939 18 8 9.7777 7.2530 1.4632 19 7 10.3236 8.7175 3.0379 20 6 11.2279 9.3326 2.2111 21 1 11.3754 8.9674 1.2055 22 6 11.9546 10.4256 2.6670 23 7 12.8217 11.0148 1.8747 24 14 11.6989 11.0575 4.4062 25 1 12.6357 10.3652 5.3272 26 1 11.9569 12.5195 4.4445 27 1 10.3008 10.7903 4.8294 28 6 7.1675 6.3580 1.6703 29 6 6.6400 5.1687 0.8647 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.7212 2.9427 -1.5343 36 1 3.0101 1.1860 -2.0157 37 1 6.5705 1.4034 1.1379 38 1 5.8890 1.7392 -0.4718 39 1 7.2175 2.7419 0.1589 40 1 4.9406 4.8277 2.1480 41 1 7.5008 3.2242 2.5944 42 1 6.0587 3.2098 3.6383 43 1 7.8126 4.7228 4.5400 44 1 6.3487 5.6267 4.0842 45 1 9.1344 6.6054 4.3855 46 1 7.8589 7.7036 3.8062 47 1 10.1907 9.0456 3.9410 48 1 13.3287 11.7781 2.1928 49 1 6.3279 6.9350 2.0582 50 1 7.7765 6.9919 1.0257 51 1 7.4790 4.5991 0.4649 52 1 6.0214 5.5303 0.0433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660787245.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:18 Heat of formation + Delta-G solvation = -41.303114 kcal Electronic energy + Delta-G solvation = -29451.320487 eV Core-core repulsion = 25451.597332 eV Total energy + Delta-G solvation = -3999.723155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.63387 -39.25194 -38.06921 -37.11184 -35.63814 -33.94869 -32.66791 -32.00276 -31.60520 -30.77152 -27.77603 -26.98889 -25.33155 -24.26476 -23.83895 -23.12332 -22.21857 -20.85992 -19.66874 -19.35536 -19.11538 -18.26787 -17.40066 -16.68790 -16.05151 -15.56947 -15.47864 -15.05109 -15.02771 -14.82193 -14.81486 -14.27733 -14.08027 -13.63102 -13.46775 -13.40074 -13.14628 -13.01780 -12.85824 -12.80863 -12.50066 -12.48749 -12.42208 -12.21127 -11.80513 -11.71443 -11.66376 -11.42094 -11.21813 -11.16869 -11.09546 -10.68674 -10.60943 -10.56944 -10.49535 -10.35548 -9.97487 -9.87808 -9.52929 -8.78754 -8.54640 -8.17441 -7.93825 -6.30810 -3.82043 2.26856 2.72614 3.03013 3.07213 3.15434 3.47952 3.74387 3.93207 4.09846 4.10747 4.37999 4.40971 4.62499 4.69960 4.79114 4.83563 4.88405 4.91859 4.93734 5.03137 5.06941 5.21983 5.24073 5.27025 5.28638 5.38980 5.39729 5.42675 5.52128 5.57426 5.59454 5.63484 5.64123 5.69398 5.69796 5.75452 5.77094 5.92610 5.94531 5.97386 5.99797 6.10218 6.27765 6.40800 6.47759 7.15802 7.24247 7.34647 7.59331 7.99977 8.15153 8.60877 8.95767 9.43157 9.84238 10.82332 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034244 B = 0.001859 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.455641 B =15056.217610 C =15293.405397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.119 4.119 4 H 0.117 0.883 5 C -0.148 4.148 6 C -0.191 4.191 7 H 0.123 0.877 8 C 0.543 3.457 9 O -0.544 6.544 10 N -0.605 5.605 11 C 0.074 3.926 12 C 0.137 3.863 13 C -0.120 4.120 14 C 0.058 3.942 15 N -0.515 5.515 16 C 0.043 3.957 17 C 0.453 3.547 18 O -0.559 6.559 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.055 3.945 29 C -0.118 4.118 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.032 0.968 45 H 0.090 0.910 46 H 0.049 0.951 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.024 0.976 50 H 0.108 0.892 51 H 0.078 0.922 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.964 -21.410 0.056 29.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.137 4.137 4 H 0.135 0.865 5 C -0.185 4.185 6 C -0.212 4.212 7 H 0.141 0.859 8 C 0.331 3.669 9 O -0.422 6.422 10 N -0.337 5.337 11 C -0.069 4.069 12 C 0.034 3.966 13 C -0.158 4.158 14 C -0.071 4.071 15 N -0.240 5.240 16 C -0.088 4.088 17 C 0.239 3.761 18 O -0.441 6.441 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.073 4.073 29 C -0.157 4.157 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.050 0.950 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.042 0.958 50 H 0.126 0.874 51 H 0.096 0.904 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.728 -21.413 -0.683 29.123 hybrid contribution -0.409 1.136 1.780 2.151 sum -20.137 -20.276 1.097 28.598 Atomic orbital electron populations 1.21743 0.95136 1.01650 1.02206 1.21151 0.96325 0.93587 1.02112 1.22490 0.91424 0.98721 1.01105 0.86474 1.23102 1.01930 1.03243 0.90238 1.22327 0.97569 0.99029 1.02240 0.85890 1.19706 0.81928 0.85486 0.79736 1.90678 1.53589 1.48835 1.49069 1.47835 1.05549 1.26681 1.53635 1.21834 0.93489 0.93601 0.97959 1.21260 0.97698 0.85898 0.91711 1.21881 0.99413 0.97845 0.96691 1.22057 0.95863 0.94147 0.95035 1.61532 1.32093 1.20883 1.09502 1.21871 0.97142 0.92860 0.96949 1.19651 0.84838 0.82806 0.88825 1.90519 1.68403 1.65219 1.19960 1.42220 1.37706 1.28801 1.14366 1.19425 1.14504 1.10714 0.98643 0.86275 1.25028 0.96372 0.96616 0.98112 1.69618 1.24601 1.22142 1.35818 0.86680 0.78542 0.79561 0.84645 1.19617 1.20218 1.19537 1.22229 0.95249 0.96242 0.93625 1.21880 0.99278 0.96730 0.97809 0.92608 0.92479 0.92491 0.91645 0.91453 0.88272 0.87762 0.92571 0.90946 0.90107 0.88569 0.90537 0.91550 0.90399 0.95003 0.89170 0.93348 0.79732 0.91639 0.95754 0.87391 0.90368 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.87 37.16 0.37 -0.46 16 2 C -0.09 -0.55 6.22 -26.73 -0.17 -0.72 16 3 C -0.12 -0.94 5.25 -90.62 -0.48 -1.42 16 4 H 0.12 1.16 7.60 -51.93 -0.39 0.76 16 5 C -0.15 -1.07 9.88 -26.73 -0.26 -1.33 16 6 C -0.19 -1.59 4.52 -91.78 -0.41 -2.01 16 7 H 0.12 0.78 7.26 -51.92 -0.38 0.41 16 8 C 0.54 6.44 7.46 -10.99 -0.08 6.36 16 9 O -0.54 -8.48 15.59 5.55 0.09 -8.40 16 10 N -0.61 -6.52 2.77 -173.79 -0.48 -7.00 16 11 C 0.07 0.58 9.03 59.85 0.54 1.12 16 12 C 0.14 1.68 2.59 -67.81 -0.18 1.51 16 13 C -0.12 -1.35 5.41 -26.65 -0.14 -1.49 16 14 C 0.06 0.71 5.46 -3.83 -0.02 0.69 16 15 N -0.52 -8.14 4.40 -236.10 -1.04 -9.18 16 16 C 0.04 0.72 5.45 -4.97 -0.03 0.69 16 17 C 0.45 10.16 7.46 -10.98 -0.08 10.07 16 18 O -0.56 -14.58 13.90 5.54 0.08 -14.50 16 19 N -0.59 -13.99 5.09 -10.96 -0.06 -14.05 16 20 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.69 13.96 55.50 0.77 -24.92 16 24 Si 0.88 19.35 27.74 -169.99 -4.71 14.64 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 28 C 0.05 0.87 5.10 -3.84 -0.02 0.85 16 29 C -0.12 -1.60 5.40 -26.66 -0.14 -1.74 16 30 H 0.05 0.26 8.14 -51.92 -0.42 -0.17 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.32 7.88 -51.93 -0.41 -0.09 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.54 8.03 -51.93 -0.42 0.13 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.44 6.64 -51.93 -0.34 0.09 16 39 H 0.08 0.67 6.37 -51.92 -0.33 0.34 16 40 H 0.10 1.37 6.90 -51.93 -0.36 1.01 16 41 H 0.08 0.86 7.60 -51.93 -0.39 0.47 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 1.31 7.99 -51.93 -0.41 0.89 16 46 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 47 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 48 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.11 2.10 5.78 -51.92 -0.30 1.80 16 51 H 0.08 1.08 6.57 -51.93 -0.34 0.74 16 52 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 406.56 15.07 6.13 6.13 Total: -1.00 -33.68 406.56 -9.52 -43.20 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -8.94 Total: 9.60 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -1.36 Total: 4.47 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.80 Total: -55.14 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.16 Total: -22.90 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.68 -9.52 -43.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660787245.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.901 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds