Wall clock time and date at job start Tue Mar 31 2020 19:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47005 * 2 1 4 4 H 1.08996 * 115.55849 * 29.31653 * 3 2 1 5 5 C 1.52999 * 117.49650 * 243.62061 * 3 2 1 6 6 C 1.52996 * 117.49842 * 174.99815 * 3 2 1 7 7 H 1.09011 * 117.51851 * 0.02562 * 6 3 2 8 8 C 1.50694 * 117.50228 * 214.98150 * 6 3 2 9 9 O 1.21283 * 119.99782 * 359.97438 * 8 6 3 10 10 N 1.34775 * 120.00582 * 179.97438 * 8 6 3 11 11 C 1.46502 * 119.99472 * 359.97438 * 10 8 6 12 12 C 1.46497 * 120.00464 * 179.97438 * 10 8 6 13 13 C 1.53127 * 109.51980 * 119.99754 * 12 10 8 14 14 C 1.53035 * 109.27723 * 177.56171 * 13 12 10 15 15 N 1.46853 * 109.52287 * 300.82196 * 14 13 12 16 16 C 1.46898 * 110.99552 * 185.83671 * 15 14 13 17 17 C 1.50706 * 109.46984 * 170.00269 * 16 15 14 18 18 O 1.21295 * 119.99863 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00080 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99873 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99509 * 359.71860 * 20 19 17 22 22 C 1.38950 * 120.00048 * 179.72298 * 20 19 17 23 23 N 1.31404 * 119.99928 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99705 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47292 * 90.00321 * 24 22 20 26 26 H 1.48504 * 109.46709 * 209.99863 * 24 22 20 27 27 H 1.48496 * 109.47395 * 329.99874 * 24 22 20 28 28 C 1.46846 * 111.19425 * 61.74414 * 15 14 13 29 29 C 1.53032 * 109.52664 * 298.25388 * 28 15 14 30 30 H 1.09009 * 109.47133 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47351 * 299.99647 * 1 2 3 32 32 H 1.09002 * 109.47338 * 60.00264 * 1 2 3 33 33 H 1.08999 * 109.47078 * 239.99972 * 2 1 3 34 34 H 1.08998 * 109.47272 * 120.00251 * 2 1 3 35 35 H 1.08998 * 117.49313 * 145.02335 * 5 3 2 36 36 H 1.08995 * 117.52031 * 359.97438 * 5 3 2 37 37 H 1.08998 * 109.47094 * 269.99867 * 11 10 8 38 38 H 1.09000 * 109.47454 * 30.00219 * 11 10 8 39 39 H 1.09007 * 109.47221 * 149.99932 * 11 10 8 40 40 H 1.09001 * 109.52056 * 359.87826 * 12 10 8 41 41 H 1.09001 * 109.49768 * 57.62339 * 13 12 10 42 42 H 1.09000 * 109.53796 * 297.52476 * 13 12 10 43 43 H 1.09003 * 109.46463 * 180.80895 * 14 13 12 44 44 H 1.08996 * 109.45506 * 60.83316 * 14 13 12 45 45 H 1.09004 * 109.47320 * 50.00673 * 16 15 14 46 46 H 1.09001 * 109.47291 * 289.99970 * 16 15 14 47 47 H 0.96996 * 119.99858 * 359.72084 * 19 17 16 48 48 H 0.96999 * 119.99865 * 179.97438 * 23 22 20 49 49 H 1.09007 * 109.46593 * 58.27364 * 28 15 14 50 50 H 1.09008 * 109.45914 * 178.23805 * 28 15 14 51 51 H 1.09001 * 109.50243 * 299.24173 * 29 28 15 52 52 H 1.08992 * 109.54075 * 179.14185 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4815 5 6 2.8439 1.9075 -1.2158 6 6 3.5501 1.6579 0.1183 7 1 4.1806 0.7721 0.1958 8 6 4.0228 2.8620 0.8915 9 8 3.2157 3.6169 1.3911 10 7 5.3423 3.1000 1.0277 11 6 6.3172 2.1877 0.4246 12 6 5.8018 4.2708 1.7788 13 6 6.6615 3.8150 2.9612 14 6 7.1884 5.0437 3.7060 15 7 7.9840 5.8697 2.7889 16 6 8.6202 6.9851 3.5025 17 6 9.6147 7.6608 2.5939 18 8 9.7777 7.2530 1.4632 19 7 10.3236 8.7175 3.0379 20 6 11.2279 9.3326 2.2111 21 1 11.3754 8.9674 1.2055 22 6 11.9546 10.4256 2.6670 23 7 12.8217 11.0148 1.8747 24 14 11.6989 11.0575 4.4062 25 1 12.6357 10.3652 5.3272 26 1 11.9569 12.5195 4.4445 27 1 10.3008 10.7903 4.8294 28 6 7.1675 6.3580 1.6703 29 6 6.6400 5.1687 0.8647 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.7212 2.9427 -1.5343 36 1 3.0101 1.1860 -2.0157 37 1 6.5705 1.4034 1.1379 38 1 5.8890 1.7392 -0.4718 39 1 7.2175 2.7419 0.1589 40 1 4.9406 4.8277 2.1480 41 1 7.5008 3.2242 2.5944 42 1 6.0587 3.2098 3.6383 43 1 7.8126 4.7228 4.5400 44 1 6.3487 5.6267 4.0842 45 1 9.1344 6.6054 4.3855 46 1 7.8589 7.7036 3.8062 47 1 10.1907 9.0456 3.9410 48 1 13.3287 11.7781 2.1928 49 1 6.3279 6.9350 2.0582 50 1 7.7765 6.9919 1.0257 51 1 7.4790 4.5991 0.4649 52 1 6.0214 5.5303 0.0433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660787245.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:17 Heat of formation + Delta-G solvation = -64.667676 kcal Electronic energy + Delta-G solvation = -29452.333650 eV Core-core repulsion = 25451.597332 eV Total energy + Delta-G solvation = -4000.736319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.54715 -40.63114 -39.39773 -37.98933 -36.70629 -35.90413 -33.80144 -33.45898 -32.69229 -31.86062 -29.11541 -27.83047 -26.64399 -25.39374 -24.62716 -24.22389 -23.26808 -21.43992 -21.26033 -20.67439 -20.19550 -19.95366 -18.22869 -17.79721 -17.52608 -16.89643 -16.53692 -16.47413 -16.25556 -15.67183 -15.51345 -15.43366 -15.26266 -15.03931 -14.82304 -14.55987 -14.41155 -14.07973 -13.99046 -13.81446 -13.53583 -13.39902 -13.25415 -13.10967 -12.97549 -12.94030 -12.74702 -12.41951 -12.34464 -12.19409 -12.16437 -11.98501 -11.92684 -11.73195 -11.58317 -11.42229 -11.24989 -10.97534 -10.75284 -10.33652 -10.22002 -9.66523 -9.23260 -8.40375 -6.00673 1.30524 1.35672 1.41741 1.44298 1.89726 1.97398 2.23358 2.60481 2.84224 3.14547 3.21660 3.41336 3.71966 3.77056 3.81346 3.86055 3.98618 4.11657 4.12863 4.21284 4.27757 4.28220 4.34274 4.40751 4.46010 4.48621 4.50774 4.56473 4.61170 4.66904 4.70180 4.77376 4.88120 4.91511 4.92895 4.95248 4.98171 5.06200 5.11102 5.15712 5.22359 5.29494 5.29893 5.48891 5.53054 5.54281 5.90201 6.01708 6.19367 6.37128 6.61241 6.89946 7.11421 7.41557 7.98834 8.77255 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034244 B = 0.001859 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.455641 B =15056.217610 C =15293.405397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 C -0.123 4.123 4 H 0.089 0.911 5 C -0.138 4.138 6 C -0.191 4.191 7 H 0.151 0.849 8 C 0.535 3.465 9 O -0.591 6.591 10 N -0.604 5.604 11 C 0.069 3.931 12 C 0.143 3.857 13 C -0.111 4.111 14 C 0.058 3.942 15 N -0.531 5.531 16 C 0.053 3.947 17 C 0.452 3.548 18 O -0.603 6.603 19 N -0.593 5.593 20 C -0.326 4.326 21 H 0.056 0.944 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.256 1.256 26 H -0.277 1.277 27 H -0.233 1.233 28 C 0.058 3.942 29 C -0.108 4.108 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.039 0.961 45 H 0.125 0.875 46 H 0.073 0.927 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.029 0.971 50 H 0.065 0.935 51 H 0.073 0.927 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.166 -23.674 2.634 31.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 C -0.142 4.142 4 H 0.108 0.892 5 C -0.175 4.175 6 C -0.212 4.212 7 H 0.169 0.831 8 C 0.325 3.675 9 O -0.472 6.472 10 N -0.334 5.334 11 C -0.072 4.072 12 C 0.040 3.960 13 C -0.150 4.150 14 C -0.069 4.069 15 N -0.256 5.256 16 C -0.078 4.078 17 C 0.240 3.760 18 O -0.487 6.487 19 N -0.235 5.235 20 C -0.455 4.455 21 H 0.074 0.926 22 C -0.213 4.213 23 N -0.576 5.576 24 Si 0.784 3.216 25 H -0.180 1.180 26 H -0.202 1.202 27 H -0.157 1.157 28 C -0.070 4.070 29 C -0.147 4.147 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.151 0.849 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.057 0.943 45 H 0.143 0.857 46 H 0.091 0.909 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.047 0.953 50 H 0.084 0.916 51 H 0.092 0.908 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.934 -23.720 1.895 31.693 hybrid contribution -0.043 1.798 0.822 1.978 sum -20.977 -21.921 2.717 30.462 Atomic orbital electron populations 1.21754 0.95163 1.02255 1.01688 1.21147 0.96275 0.92052 1.03096 1.22485 0.90844 0.99514 1.01359 0.89231 1.23184 1.00763 1.03118 0.90449 1.22378 0.98118 0.98304 1.02390 0.83098 1.20365 0.81753 0.86020 0.79376 1.90654 1.54776 1.50682 1.51131 1.47914 1.05943 1.26406 1.53169 1.22052 0.92551 0.93359 0.99268 1.21039 0.96696 0.86318 0.91996 1.21823 0.99326 0.97589 0.96218 1.22172 0.96065 0.93799 0.94906 1.61499 1.33060 1.20834 1.10250 1.21829 0.96312 0.93502 0.96127 1.20864 0.84460 0.81742 0.88959 1.90511 1.69561 1.66175 1.22428 1.42045 1.37454 1.29317 1.14684 1.18997 1.16988 1.12234 0.97307 0.92594 1.26080 0.95151 0.96030 1.04046 1.69801 1.25894 1.22940 1.38938 0.85382 0.80706 0.78448 0.77087 1.18041 1.20171 1.15665 1.22049 0.94596 0.96701 0.93662 1.21746 0.99129 0.96171 0.97641 0.91387 0.93518 0.92587 0.89858 0.91143 0.89929 0.84882 0.90617 0.88821 0.90845 0.90668 0.90178 0.90056 0.88196 0.94254 0.85703 0.90875 0.77589 0.91216 0.95272 0.91625 0.90800 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.87 71.98 0.71 -0.76 16 2 C -0.09 -0.85 6.22 30.59 0.19 -0.66 16 3 C -0.12 -1.82 5.25 -10.79 -0.06 -1.88 16 4 H 0.09 1.84 7.60 -2.39 -0.02 1.82 16 5 C -0.14 -1.76 9.88 30.59 0.30 -1.46 16 6 C -0.19 -2.84 4.52 -11.54 -0.05 -2.89 16 7 H 0.15 1.37 7.26 -2.38 -0.02 1.36 16 8 C 0.53 12.37 7.46 87.66 0.65 13.02 16 9 O -0.59 -18.90 15.59 -3.04 -0.05 -18.95 16 10 N -0.60 -12.31 2.77 -822.14 -2.28 -14.58 16 11 C 0.07 0.92 9.03 127.77 1.15 2.07 16 12 C 0.14 3.41 2.59 45.07 0.12 3.53 16 13 C -0.11 -2.24 5.41 30.65 0.17 -2.08 16 14 C 0.06 1.27 5.46 86.32 0.47 1.74 16 15 N -0.53 -15.99 4.40 -900.90 -3.96 -19.95 16 16 C 0.05 1.65 5.45 85.56 0.47 2.12 16 17 C 0.45 20.36 7.46 87.66 0.65 21.01 16 18 O -0.60 -32.93 13.90 -3.08 -0.04 -32.97 16 19 N -0.59 -27.98 5.09 -306.97 -1.56 -29.54 16 20 C -0.33 -19.11 10.16 84.04 0.85 -18.26 16 21 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 22 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 23 N -0.93 -56.53 13.96 21.66 0.30 -56.22 16 24 Si 0.96 38.96 27.74 68.60 1.90 40.86 16 25 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 26 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 28 C 0.06 1.89 5.10 86.32 0.44 2.33 16 29 C -0.11 -2.97 5.40 30.64 0.17 -2.80 16 30 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 33 H 0.08 0.53 7.88 -2.39 -0.02 0.51 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.13 0.94 8.03 -2.39 -0.02 0.92 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 0.85 6.64 -2.39 -0.02 0.84 16 39 H 0.07 1.11 6.37 -2.38 -0.02 1.10 16 40 H 0.08 2.15 6.90 -2.39 -0.02 2.13 16 41 H 0.08 1.59 7.60 -2.39 -0.02 1.57 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.10 1.79 8.02 -2.39 -0.02 1.77 16 44 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.13 3.07 7.99 -2.39 -0.02 3.06 16 46 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 47 H 0.39 15.22 5.76 -92.71 -0.53 14.68 16 48 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 49 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 50 H 0.07 2.70 5.78 -2.38 -0.01 2.68 16 51 H 0.07 2.08 6.57 -2.39 -0.02 2.06 16 52 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -80.91 406.56 1.33 -79.58 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: 0.32 Total: 37.08 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 6.70 Total: 14.71 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -7.50 Total: -120.30 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -0.09 Total: -51.93 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 1.90 Total: 40.86 kcal Total: -80.91 1.33 -79.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660787245.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.908 kcal (2) G-P(sol) polarization free energy of solvation -80.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds