Wall clock time and date at job start Tue Mar 31 2020 19:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47292 * 2 1 4 4 H 1.08998 * 115.55151 * 29.33192 * 3 2 1 5 5 C 1.53072 * 117.49538 * 243.60053 * 3 2 1 6 6 C 1.53002 * 59.98547 * 252.51479 * 5 3 2 7 7 H 1.08996 * 117.49989 * 107.50116 * 6 5 3 8 8 C 1.50704 * 117.49643 * 252.49958 * 6 5 3 9 9 O 1.21278 * 120.00039 * 68.74433 * 8 6 5 10 10 N 1.34776 * 119.99717 * 248.74538 * 8 6 5 11 11 C 1.46928 * 120.63292 * 5.98649 * 10 8 6 12 12 C 1.53191 * 108.77369 * 126.37098 * 11 10 8 13 13 C 1.53044 * 109.31235 * 54.63778 * 12 11 10 14 14 C 1.53040 * 109.53396 * 298.63305 * 13 12 11 15 15 C 1.46931 * 120.62737 * 185.96661 * 10 8 6 16 16 H 1.09002 * 109.58253 * 113.84187 * 15 10 8 17 17 C 1.52997 * 109.70538 * 353.48724 * 15 10 8 18 18 N 1.46904 * 109.47111 * 69.32804 * 17 15 10 19 19 C 1.46901 * 110.99770 * 179.97438 * 18 17 15 20 20 C 1.50697 * 109.46831 * 180.02562 * 19 18 17 21 21 O 1.21290 * 120.00335 * 359.97438 * 20 19 18 22 22 N 1.34783 * 119.99903 * 180.02562 * 20 19 18 23 23 C 1.37093 * 120.00151 * 179.97438 * 22 20 19 24 24 H 1.08003 * 119.99773 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00161 * 179.97438 * 23 22 20 26 26 N 1.31412 * 119.99913 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00239 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47143 * 59.99589 * 27 25 23 29 29 H 1.48497 * 109.47302 * 179.97438 * 27 25 23 30 30 H 1.48505 * 109.46909 * 300.00182 * 27 25 23 31 31 H 1.08999 * 109.46943 * 59.99748 * 1 2 3 32 32 H 1.09004 * 109.47365 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47065 * 300.00154 * 1 2 3 34 34 H 1.09001 * 109.47494 * 239.99592 * 2 1 3 35 35 H 1.09007 * 109.47142 * 120.00083 * 2 1 3 36 36 H 1.08997 * 117.51833 * 145.03727 * 5 3 2 37 37 H 1.09000 * 117.49112 * 359.97438 * 5 3 2 38 38 H 1.09002 * 109.58633 * 6.58521 * 11 10 8 39 39 H 1.09001 * 109.70287 * 246.22999 * 11 10 8 40 40 H 1.08999 * 109.49487 * 294.68420 * 12 11 10 41 41 H 1.09006 * 109.49608 * 174.58699 * 12 11 10 42 42 H 1.09001 * 109.45656 * 178.61224 * 13 12 11 43 43 H 1.09000 * 109.46175 * 58.65480 * 13 12 11 44 44 H 1.09001 * 109.49750 * 301.41270 * 14 13 12 45 45 H 1.09007 * 109.49651 * 181.32079 * 14 13 12 46 46 H 1.08993 * 109.47154 * 189.33318 * 17 15 10 47 47 H 1.09002 * 109.47083 * 309.33165 * 17 15 10 48 48 H 1.00898 * 110.99258 * 56.05169 * 18 17 15 49 49 H 1.09001 * 109.47349 * 300.00498 * 19 18 17 50 50 H 1.08999 * 109.47014 * 60.00376 * 19 18 17 51 51 H 0.97000 * 119.99357 * 359.97438 * 22 20 19 52 52 H 0.96996 * 120.00212 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8448 1.9075 -1.2162 6 6 3.5502 1.6578 0.1183 7 1 4.1803 0.7719 0.1965 8 6 4.0229 2.8620 0.8915 9 8 3.2159 3.6158 1.3928 10 7 5.3425 3.1011 1.0257 11 6 6.3290 2.2744 0.3171 12 6 7.2567 3.1925 -0.4848 13 6 7.8685 4.2369 0.4517 14 6 6.7551 5.0903 1.0636 15 6 5.8217 4.1938 1.8831 16 1 6.3652 3.7801 2.7326 17 6 4.6325 5.0147 2.3857 18 7 3.8516 4.2134 3.3376 19 6 2.6992 4.9715 3.8428 20 6 1.9244 4.1194 4.8146 21 8 2.2953 2.9913 5.0617 22 7 0.8185 4.6104 5.4084 23 6 0.1133 3.8350 6.2921 24 1 0.4436 2.8305 6.5121 25 6 -1.0264 4.3414 6.9047 26 7 -1.4286 5.5634 6.6367 27 14 -1.9870 3.2851 8.1094 28 1 -1.1082 2.9052 9.2446 29 1 -3.1516 4.0517 8.6205 30 1 -2.4644 2.0589 7.4210 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 2.7227 2.9426 -1.5350 37 1 3.0109 1.1854 -2.0157 38 1 5.8151 1.5923 -0.3602 39 1 6.9142 1.7024 1.0372 40 1 6.6855 3.6944 -1.2659 41 1 8.0516 2.6003 -0.9382 42 1 8.5480 4.8762 -0.1118 43 1 8.4189 3.7338 1.2467 44 1 6.1887 5.5743 0.2679 45 1 7.1930 5.8490 1.7123 46 1 4.9959 5.9151 2.8809 47 1 4.0012 5.2938 1.5421 48 1 4.4310 3.8881 4.0969 49 1 3.0496 5.8714 4.3483 50 1 2.0544 5.2507 3.0095 51 1 0.5217 5.5124 5.2105 52 1 -2.2240 5.9170 7.0646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661950824.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:53 Heat of formation + Delta-G solvation = -23.334756 kcal Electronic energy + Delta-G solvation = -30765.949469 eV Core-core repulsion = 26767.005480 eV Total energy + Delta-G solvation = -3998.943989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.51605 -38.19375 -37.93045 -36.50032 -35.00484 -33.68772 -32.84963 -31.95295 -31.48913 -31.00990 -27.53553 -25.81225 -24.50607 -24.23768 -23.62438 -23.02769 -21.64248 -20.78972 -20.24825 -19.14654 -18.58735 -17.70142 -17.00392 -16.08803 -15.81266 -15.26866 -15.03020 -14.80574 -14.71114 -14.51987 -14.36725 -14.19249 -14.01943 -13.63800 -13.61840 -13.19784 -13.06247 -12.78610 -12.53177 -12.27235 -12.24740 -12.06929 -12.03504 -11.69547 -11.41703 -11.30960 -11.23635 -11.18831 -11.11897 -10.98238 -10.89465 -10.80203 -10.63899 -10.35978 -10.17259 -10.09254 -9.86687 -9.36521 -8.68160 -8.42207 -8.17714 -7.82053 -7.46000 -6.28853 -3.68897 2.89859 3.09941 3.27916 3.31995 3.37052 3.94571 4.11465 4.23745 4.39619 4.47866 4.58216 4.68742 4.75222 4.84524 4.86631 5.04060 5.09980 5.15608 5.22876 5.29286 5.31644 5.38664 5.39832 5.47153 5.48365 5.49699 5.58443 5.61124 5.68485 5.70289 5.74452 5.81489 5.82154 5.85526 5.93317 6.02833 6.05213 6.09359 6.20232 6.23621 6.29027 6.35603 6.49831 6.51123 6.76773 7.58356 7.66647 7.70384 8.03615 8.21562 8.72645 8.77728 9.32048 9.71091 10.24356 10.89440 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.003291 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.178074 B = 8504.742951 C =10508.859739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.112 4.112 4 H 0.119 0.881 5 C -0.156 4.156 6 C -0.184 4.184 7 H 0.113 0.887 8 C 0.534 3.466 9 O -0.465 6.465 10 N -0.610 5.610 11 C 0.112 3.888 12 C -0.134 4.134 13 C -0.118 4.118 14 C -0.129 4.129 15 C 0.154 3.846 16 H 0.067 0.933 17 C 0.070 3.930 18 N -0.634 5.634 19 C 0.064 3.936 20 C 0.449 3.551 21 O -0.583 6.583 22 N -0.570 5.570 23 C -0.295 4.295 24 H 0.100 0.900 25 C 0.020 3.980 26 N -0.905 5.905 27 Si 0.929 3.071 28 H -0.275 1.275 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.014 0.986 47 H 0.093 0.907 48 H 0.328 0.672 49 H 0.030 0.970 50 H 0.086 0.914 51 H 0.391 0.609 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.268 -3.826 -18.585 24.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.131 4.131 4 H 0.137 0.863 5 C -0.194 4.194 6 C -0.205 4.205 7 H 0.131 0.869 8 C 0.321 3.679 9 O -0.335 6.335 10 N -0.347 5.347 11 C -0.012 4.012 12 C -0.173 4.173 13 C -0.156 4.156 14 C -0.168 4.168 15 C 0.051 3.949 16 H 0.084 0.916 17 C -0.059 4.059 18 N -0.266 5.266 19 C -0.069 4.069 20 C 0.235 3.765 21 O -0.467 6.467 22 N -0.207 5.207 23 C -0.425 4.425 24 H 0.118 0.882 25 C -0.181 4.181 26 N -0.547 5.547 27 Si 0.756 3.244 28 H -0.200 1.200 29 H -0.211 1.211 30 H -0.200 1.200 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.032 0.968 47 H 0.111 0.889 48 H 0.146 0.854 49 H 0.048 0.952 50 H 0.104 0.896 51 H 0.224 0.776 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.489 -4.385 -18.538 24.552 hybrid contribution -0.028 0.633 1.134 1.299 sum 15.461 -3.752 -17.404 23.580 Atomic orbital electron populations 1.21740 0.95207 1.01439 1.02363 1.21120 0.96349 0.93835 1.01684 1.22451 0.91858 0.98665 1.00122 0.86252 1.23061 1.03401 1.02555 0.90369 1.22324 0.97576 0.99311 1.01290 0.86860 1.19412 0.81816 0.86139 0.80573 1.90826 1.53302 1.46306 1.43103 1.47732 1.05372 1.33294 1.48314 1.21614 0.90942 0.93119 0.95498 1.21920 0.99005 0.97962 0.98371 1.21491 0.97474 0.97589 0.99000 1.21937 0.96817 0.97980 1.00092 1.21159 0.94719 0.87167 0.91887 0.91555 1.22144 0.93155 0.92723 0.97869 1.60316 1.09331 1.38684 1.18302 1.21496 0.93904 0.93916 0.97556 1.19920 0.83523 0.88449 0.84633 1.90492 1.70111 1.19994 1.66063 1.41857 1.23250 1.16179 1.39398 1.19631 1.05771 0.98734 1.18334 0.88190 1.25222 0.97560 0.96384 0.98923 1.69612 1.25610 1.15187 1.44335 0.85952 0.78728 0.79410 0.80300 1.20046 1.21064 1.19976 0.92791 0.92868 0.91996 0.92215 0.91380 0.88735 0.88498 0.89795 0.92003 0.91559 0.91072 0.91847 0.91818 0.91423 0.90973 0.96836 0.88892 0.85391 0.95163 0.89591 0.77589 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.87 37.16 0.37 -1.34 16 2 C -0.09 -1.05 6.22 -26.73 -0.17 -1.21 16 3 C -0.11 -1.46 5.25 -90.58 -0.48 -1.93 16 4 H 0.12 1.94 7.60 -51.93 -0.39 1.54 16 5 C -0.16 -1.62 9.88 -26.69 -0.26 -1.88 16 6 C -0.18 -2.24 4.52 -91.77 -0.41 -2.65 16 7 H 0.11 1.20 7.11 -51.93 -0.37 0.83 16 8 C 0.53 7.85 7.17 -10.98 -0.08 7.78 16 9 O -0.47 -8.53 9.79 5.56 0.05 -8.48 16 10 N -0.61 -7.30 2.97 -165.22 -0.49 -7.79 16 11 C 0.11 0.95 6.24 -3.71 -0.02 0.93 16 12 C -0.13 -0.93 6.08 -26.61 -0.16 -1.09 16 13 C -0.12 -0.85 5.88 -26.69 -0.16 -1.01 16 14 C -0.13 -1.16 5.36 -26.61 -0.14 -1.30 16 15 C 0.15 1.83 3.07 -67.60 -0.21 1.62 16 16 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 17 C 0.07 1.03 4.30 -3.82 -0.02 1.01 16 18 N -0.63 -11.78 3.55 -115.06 -0.41 -12.19 16 19 C 0.06 1.31 5.79 -4.98 -0.03 1.28 16 20 C 0.45 11.60 7.82 -10.98 -0.09 11.51 16 21 O -0.58 -16.99 15.78 5.55 0.09 -16.91 16 22 N -0.57 -15.53 5.29 -10.96 -0.06 -15.59 16 23 C -0.29 -8.69 9.68 -14.94 -0.14 -8.83 16 24 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 25 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 26 N -0.91 -25.83 13.05 55.50 0.72 -25.11 16 27 Si 0.93 21.99 29.55 -169.99 -5.02 16.97 16 28 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 30 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.55 7.88 -51.93 -0.41 0.15 16 35 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.10 0.79 8.03 -51.93 -0.42 0.37 16 38 H 0.08 0.64 5.89 -51.93 -0.31 0.33 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 47 H 0.09 1.50 6.31 -51.93 -0.33 1.17 16 48 H 0.33 6.28 8.41 -39.29 -0.33 5.95 16 49 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.09 1.77 7.89 -51.93 -0.41 1.36 16 51 H 0.39 10.28 7.90 -40.82 -0.32 9.96 16 52 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 408.51 15.07 6.16 6.16 Total: -1.00 -33.90 408.51 -10.19 -44.09 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -9.14 Total: 15.51 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -2.10 Total: 3.34 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.23 Total: -60.69 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: 0.14 Total: -25.38 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.90 -10.19 -44.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661950824.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.756 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds