Wall clock time and date at job start Tue Mar 31 2020 19:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47292 * 2 1 4 4 H 1.08998 * 115.55151 * 29.33192 * 3 2 1 5 5 C 1.53072 * 117.49538 * 243.60053 * 3 2 1 6 6 C 1.53002 * 59.98547 * 252.51479 * 5 3 2 7 7 H 1.08996 * 117.49989 * 107.50116 * 6 5 3 8 8 C 1.50704 * 117.49643 * 252.49958 * 6 5 3 9 9 O 1.21278 * 120.00039 * 68.74433 * 8 6 5 10 10 N 1.34776 * 119.99717 * 248.74538 * 8 6 5 11 11 C 1.46928 * 120.63292 * 5.98649 * 10 8 6 12 12 C 1.53191 * 108.77369 * 126.37098 * 11 10 8 13 13 C 1.53044 * 109.31235 * 54.63778 * 12 11 10 14 14 C 1.53040 * 109.53396 * 298.63305 * 13 12 11 15 15 C 1.46931 * 120.62737 * 185.96661 * 10 8 6 16 16 H 1.09002 * 109.58253 * 113.84187 * 15 10 8 17 17 C 1.52997 * 109.70538 * 353.48724 * 15 10 8 18 18 N 1.46904 * 109.47111 * 69.32804 * 17 15 10 19 19 C 1.46901 * 110.99770 * 179.97438 * 18 17 15 20 20 C 1.50697 * 109.46831 * 180.02562 * 19 18 17 21 21 O 1.21290 * 120.00335 * 359.97438 * 20 19 18 22 22 N 1.34783 * 119.99903 * 180.02562 * 20 19 18 23 23 C 1.37093 * 120.00151 * 179.97438 * 22 20 19 24 24 H 1.08003 * 119.99773 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00161 * 179.97438 * 23 22 20 26 26 N 1.31412 * 119.99913 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00239 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47143 * 59.99589 * 27 25 23 29 29 H 1.48497 * 109.47302 * 179.97438 * 27 25 23 30 30 H 1.48505 * 109.46909 * 300.00182 * 27 25 23 31 31 H 1.08999 * 109.46943 * 59.99748 * 1 2 3 32 32 H 1.09004 * 109.47365 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47065 * 300.00154 * 1 2 3 34 34 H 1.09001 * 109.47494 * 239.99592 * 2 1 3 35 35 H 1.09007 * 109.47142 * 120.00083 * 2 1 3 36 36 H 1.08997 * 117.51833 * 145.03727 * 5 3 2 37 37 H 1.09000 * 117.49112 * 359.97438 * 5 3 2 38 38 H 1.09002 * 109.58633 * 6.58521 * 11 10 8 39 39 H 1.09001 * 109.70287 * 246.22999 * 11 10 8 40 40 H 1.08999 * 109.49487 * 294.68420 * 12 11 10 41 41 H 1.09006 * 109.49608 * 174.58699 * 12 11 10 42 42 H 1.09001 * 109.45656 * 178.61224 * 13 12 11 43 43 H 1.09000 * 109.46175 * 58.65480 * 13 12 11 44 44 H 1.09001 * 109.49750 * 301.41270 * 14 13 12 45 45 H 1.09007 * 109.49651 * 181.32079 * 14 13 12 46 46 H 1.08993 * 109.47154 * 189.33318 * 17 15 10 47 47 H 1.09002 * 109.47083 * 309.33165 * 17 15 10 48 48 H 1.00898 * 110.99258 * 56.05169 * 18 17 15 49 49 H 1.09001 * 109.47349 * 300.00498 * 19 18 17 50 50 H 1.08999 * 109.47014 * 60.00376 * 19 18 17 51 51 H 0.97000 * 119.99357 * 359.97438 * 22 20 19 52 52 H 0.96996 * 120.00212 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8448 1.9075 -1.2162 6 6 3.5502 1.6578 0.1183 7 1 4.1803 0.7719 0.1965 8 6 4.0229 2.8620 0.8915 9 8 3.2159 3.6158 1.3928 10 7 5.3425 3.1011 1.0257 11 6 6.3290 2.2744 0.3171 12 6 7.2567 3.1925 -0.4848 13 6 7.8685 4.2369 0.4517 14 6 6.7551 5.0903 1.0636 15 6 5.8217 4.1938 1.8831 16 1 6.3652 3.7801 2.7326 17 6 4.6325 5.0147 2.3857 18 7 3.8516 4.2134 3.3376 19 6 2.6992 4.9715 3.8428 20 6 1.9244 4.1194 4.8146 21 8 2.2953 2.9913 5.0617 22 7 0.8185 4.6104 5.4084 23 6 0.1133 3.8350 6.2921 24 1 0.4436 2.8305 6.5121 25 6 -1.0264 4.3414 6.9047 26 7 -1.4286 5.5634 6.6367 27 14 -1.9870 3.2851 8.1094 28 1 -1.1082 2.9052 9.2446 29 1 -3.1516 4.0517 8.6205 30 1 -2.4644 2.0589 7.4210 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 2.7227 2.9426 -1.5350 37 1 3.0109 1.1854 -2.0157 38 1 5.8151 1.5923 -0.3602 39 1 6.9142 1.7024 1.0372 40 1 6.6855 3.6944 -1.2659 41 1 8.0516 2.6003 -0.9382 42 1 8.5480 4.8762 -0.1118 43 1 8.4189 3.7338 1.2467 44 1 6.1887 5.5743 0.2679 45 1 7.1930 5.8490 1.7123 46 1 4.9959 5.9151 2.8809 47 1 4.0012 5.2938 1.5421 48 1 4.4310 3.8881 4.0969 49 1 3.0496 5.8714 4.3483 50 1 2.0544 5.2507 3.0095 51 1 0.5217 5.5124 5.2105 52 1 -2.2240 5.9170 7.0646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661950824.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:52 Heat of formation + Delta-G solvation = -45.282140 kcal Electronic energy + Delta-G solvation = -30766.901179 eV Core-core repulsion = 26767.005480 eV Total energy + Delta-G solvation = -3999.895699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.52421 -40.09075 -39.00172 -37.51941 -36.48797 -35.77023 -33.72162 -33.30630 -32.88442 -32.40812 -28.95627 -27.18848 -26.07975 -25.13903 -24.51682 -24.35075 -22.65944 -21.57196 -21.24364 -21.02731 -19.97072 -19.58556 -18.01936 -17.72713 -17.07051 -16.74310 -16.46071 -16.09385 -15.88399 -15.70258 -15.53115 -15.35872 -15.19363 -15.13457 -14.72456 -14.49073 -14.18709 -14.00928 -13.82517 -13.54052 -13.30024 -13.24201 -13.09244 -13.06535 -12.93116 -12.85167 -12.73300 -12.45557 -12.18930 -12.13744 -12.05321 -11.93340 -11.76071 -11.51770 -11.51307 -11.41117 -11.12734 -10.79015 -10.33025 -10.03069 -9.81788 -9.40424 -8.86566 -8.47484 -5.96925 1.37806 1.38170 1.50410 1.84727 2.05087 2.18422 2.28012 2.93527 3.03595 3.19130 3.54385 3.58943 3.82234 3.86250 3.96724 3.99557 4.06182 4.19230 4.27686 4.29805 4.31979 4.36284 4.39847 4.44876 4.47892 4.55275 4.58341 4.63026 4.71580 4.77866 4.78854 4.89649 4.93960 5.00572 5.02768 5.09693 5.12852 5.15316 5.21581 5.25127 5.26417 5.28780 5.37834 5.49581 5.51079 5.83927 5.91359 6.19303 6.58841 6.59689 6.72318 7.10831 7.54502 7.65395 8.10681 8.70325 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.003291 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.178074 B = 8504.742951 C =10508.859739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.137 4.137 4 H 0.073 0.927 5 C -0.123 4.123 6 C -0.187 4.187 7 H 0.135 0.865 8 C 0.521 3.479 9 O -0.516 6.516 10 N -0.608 5.608 11 C 0.105 3.895 12 C -0.128 4.128 13 C -0.116 4.116 14 C -0.122 4.122 15 C 0.153 3.847 16 H 0.065 0.935 17 C 0.076 3.924 18 N -0.643 5.643 19 C 0.082 3.918 20 C 0.444 3.556 21 O -0.621 6.621 22 N -0.576 5.576 23 C -0.335 4.335 24 H 0.077 0.923 25 C -0.015 4.015 26 N -0.923 5.923 27 Si 0.996 3.004 28 H -0.270 1.270 29 H -0.267 1.267 30 H -0.272 1.272 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.027 0.973 47 H 0.077 0.923 48 H 0.321 0.679 49 H 0.052 0.948 50 H 0.083 0.917 51 H 0.394 0.606 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.945 -4.533 -20.176 27.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 C -0.156 4.156 4 H 0.092 0.908 5 C -0.160 4.160 6 C -0.208 4.208 7 H 0.153 0.847 8 C 0.309 3.691 9 O -0.390 6.390 10 N -0.344 5.344 11 C -0.017 4.017 12 C -0.166 4.166 13 C -0.153 4.153 14 C -0.160 4.160 15 C 0.049 3.951 16 H 0.083 0.917 17 C -0.052 4.052 18 N -0.275 5.275 19 C -0.050 4.050 20 C 0.231 3.769 21 O -0.507 6.507 22 N -0.213 5.213 23 C -0.464 4.464 24 H 0.095 0.905 25 C -0.214 4.214 26 N -0.564 5.564 27 Si 0.819 3.181 28 H -0.195 1.195 29 H -0.192 1.192 30 H -0.197 1.197 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.151 0.849 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.100 0.900 46 H 0.045 0.955 47 H 0.095 0.905 48 H 0.139 0.861 49 H 0.070 0.930 50 H 0.101 0.899 51 H 0.227 0.773 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.213 -5.068 -20.162 26.990 hybrid contribution -0.533 0.891 1.607 1.914 sum 16.679 -4.177 -18.555 25.297 Atomic orbital electron populations 1.21738 0.95667 1.02087 1.01233 1.21093 0.95947 0.92758 1.02497 1.22338 0.91941 0.98775 1.02541 0.90833 1.23115 1.00047 1.02948 0.89930 1.22374 0.97017 0.99068 1.02354 0.84709 1.19963 0.82417 0.86424 0.80313 1.90802 1.54697 1.48021 1.45447 1.47857 1.05241 1.33395 1.47887 1.21901 0.90622 0.93372 0.95852 1.21890 0.99127 0.97737 0.97830 1.21502 0.96880 0.97643 0.99283 1.21884 0.96670 0.97850 0.99635 1.21195 0.93821 0.87516 0.92542 0.91698 1.22112 0.93433 0.93294 0.96365 1.60326 1.09228 1.39752 1.18186 1.21262 0.94189 0.93576 0.95997 1.20841 0.83095 0.88471 0.84478 1.90449 1.70997 1.21884 1.67362 1.41928 1.23705 1.16149 1.39506 1.19637 1.07601 0.98595 1.20602 0.90491 1.26097 0.97642 0.97686 0.99990 1.69683 1.25930 1.16176 1.44625 0.84960 0.77558 0.77776 0.77837 1.19469 1.19177 1.19747 0.91845 0.91250 0.95221 0.88979 0.92767 0.89508 0.84910 0.88520 0.91334 0.92002 0.88609 0.90213 0.91392 0.92061 0.89950 0.95530 0.90522 0.86141 0.93037 0.89873 0.77276 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.87 71.98 0.71 -2.77 16 2 C -0.09 -1.91 6.22 30.59 0.19 -1.72 16 3 C -0.14 -3.65 5.25 -10.77 -0.06 -3.71 16 4 H 0.07 2.64 7.60 -2.39 -0.02 2.63 16 5 C -0.12 -2.36 9.88 30.62 0.30 -2.06 16 6 C -0.19 -4.45 4.52 -11.54 -0.05 -4.51 16 7 H 0.14 2.58 7.11 -2.39 -0.02 2.56 16 8 C 0.52 15.61 7.17 87.66 0.63 16.24 16 9 O -0.52 -19.99 9.79 -3.02 -0.03 -20.02 16 10 N -0.61 -14.13 2.97 -795.02 -2.36 -16.49 16 11 C 0.10 1.54 6.24 86.36 0.54 2.08 16 12 C -0.13 -1.36 6.08 30.67 0.19 -1.17 16 13 C -0.12 -1.32 5.88 30.62 0.18 -1.14 16 14 C -0.12 -1.96 5.36 30.67 0.16 -1.80 16 15 C 0.15 3.54 3.07 44.97 0.14 3.67 16 16 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 17 C 0.08 2.28 4.30 86.30 0.37 2.65 16 18 N -0.64 -24.85 3.55 -517.93 -1.84 -26.69 16 19 C 0.08 3.52 5.79 85.56 0.50 4.01 16 20 C 0.44 24.05 7.82 87.66 0.69 24.73 16 21 O -0.62 -38.10 15.78 -3.06 -0.05 -38.15 16 22 N -0.58 -32.78 5.29 -306.98 -1.62 -34.40 16 23 C -0.33 -20.48 9.68 84.04 0.81 -19.66 16 24 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 25 C -0.01 -0.84 5.50 84.93 0.47 -0.38 16 26 N -0.92 -52.89 13.05 21.66 0.28 -52.60 16 27 Si 1.00 45.24 29.55 68.60 2.03 47.27 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 29 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 30 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 33 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.09 1.45 7.88 -2.39 -0.02 1.43 16 35 H 0.05 1.33 8.14 -2.38 -0.02 1.32 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.13 1.62 8.03 -2.39 -0.02 1.60 16 38 H 0.10 1.18 5.89 -2.39 -0.01 1.16 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.03 0.72 8.13 -2.39 -0.02 0.70 16 47 H 0.08 2.57 6.31 -2.39 -0.02 2.55 16 48 H 0.32 12.79 8.41 -89.70 -0.75 12.04 16 49 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.08 3.60 7.89 -2.39 -0.02 3.58 16 51 H 0.39 21.53 7.90 -92.71 -0.73 20.80 16 52 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -77.66 408.51 1.60 -76.05 By element: Atomic # 1 Polarization: 51.13 SS G_CDS: -0.57 Total: 50.56 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 5.76 Total: 14.47 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -5.54 Total: -130.18 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: -0.08 Total: -58.17 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -77.66 1.60 -76.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661950824.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.772 kcal (2) G-P(sol) polarization free energy of solvation -77.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds