Wall clock time and date at job start Tue Mar 31 2020 19:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46736 * 2 1 4 4 H 1.09001 * 115.55180 * 29.33287 * 3 2 1 5 5 C 1.53001 * 117.50017 * 243.61763 * 3 2 1 6 6 C 1.52992 * 60.00153 * 252.51601 * 5 3 2 7 7 H 1.09003 * 117.50030 * 107.49040 * 6 5 3 8 8 C 1.50698 * 117.51668 * 252.51614 * 6 5 3 9 9 O 1.21288 * 120.00100 * 68.63371 * 8 6 5 10 10 N 1.34773 * 120.00497 * 248.63052 * 8 6 5 11 11 C 1.46934 * 120.62903 * 354.97443 * 10 8 6 12 12 C 1.53192 * 108.77537 * 233.58727 * 11 10 8 13 13 C 1.53040 * 109.31435 * 305.36176 * 12 11 10 14 14 C 1.53041 * 109.53675 * 61.36597 * 13 12 11 15 15 C 1.46926 * 120.63691 * 174.69472 * 10 8 6 16 16 H 1.08994 * 109.59213 * 246.20567 * 15 10 8 17 17 C 1.53004 * 109.58173 * 6.63108 * 15 10 8 18 18 N 1.46902 * 109.47099 * 181.05278 * 17 15 10 19 19 C 1.46895 * 111.00254 * 185.53927 * 18 17 15 20 20 C 1.50700 * 109.47214 * 179.97438 * 19 18 17 21 21 O 1.21288 * 119.99808 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99564 * 179.97438 * 20 19 18 23 23 C 1.37101 * 119.99649 * 180.02562 * 22 20 19 24 24 H 1.07998 * 119.99873 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00153 * 180.02562 * 23 22 20 26 26 N 1.31407 * 119.99852 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00147 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47411 * 89.99661 * 27 25 23 29 29 H 1.48504 * 109.46967 * 209.99716 * 27 25 23 30 30 H 1.48498 * 109.46766 * 329.99354 * 27 25 23 31 31 H 1.09002 * 109.46989 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47054 * 60.00207 * 1 2 3 33 33 H 1.08995 * 109.46987 * 299.99831 * 1 2 3 34 34 H 1.08995 * 109.47016 * 119.99900 * 2 1 3 35 35 H 1.09003 * 109.47309 * 240.00168 * 2 1 3 36 36 H 1.09008 * 117.49517 * 0.02562 * 5 3 2 37 37 H 1.09003 * 117.49822 * 145.02091 * 5 3 2 38 38 H 1.09002 * 109.58464 * 353.37152 * 11 10 8 39 39 H 1.09003 * 109.58387 * 113.79720 * 11 10 8 40 40 H 1.08991 * 109.49919 * 65.31841 * 12 11 10 41 41 H 1.09003 * 109.49597 * 185.41271 * 12 11 10 42 42 H 1.08993 * 109.46030 * 181.38962 * 13 12 11 43 43 H 1.09004 * 109.46129 * 301.35004 * 13 12 11 44 44 H 1.09005 * 109.49670 * 58.58737 * 14 13 12 45 45 H 1.08996 * 109.49863 * 178.65290 * 14 13 12 46 46 H 1.08999 * 109.46899 * 301.04908 * 17 15 10 47 47 H 1.08999 * 109.47150 * 61.04981 * 17 15 10 48 48 H 1.00901 * 111.00130 * 61.58118 * 18 17 15 49 49 H 1.08995 * 109.46910 * 299.99992 * 19 18 17 50 50 H 1.09003 * 109.47294 * 59.99720 * 19 18 17 51 51 H 0.96993 * 120.00752 * 0.02562 * 22 20 19 52 52 H 0.97002 * 119.99982 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1716 0.4817 5 6 2.8440 1.9077 -1.2158 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7720 0.1961 8 6 4.0228 2.8618 0.8919 9 8 3.2157 3.6162 1.3924 10 7 5.3423 3.1000 1.0277 11 6 6.3324 2.1390 0.5228 12 6 7.2938 1.7783 1.6596 13 6 7.8994 3.0600 2.2362 14 6 6.7854 3.9407 2.8068 15 6 5.8183 4.3286 1.6780 16 1 6.3351 4.9517 0.9482 17 6 4.6285 5.0948 2.2599 18 7 5.1043 6.3349 2.8873 19 6 4.0079 7.0330 3.5716 20 6 4.5331 8.2970 4.2021 21 8 5.7056 8.5874 4.0926 22 7 3.6999 9.1046 4.8877 23 6 4.1776 10.2548 5.4608 24 1 5.2216 10.5134 5.3633 25 6 3.3188 11.0872 6.1681 26 7 2.0486 10.7723 6.2871 27 14 3.9695 12.6547 6.9484 28 1 3.8561 13.7742 5.9793 29 1 3.1755 12.9694 8.1633 30 1 5.3941 12.4666 7.3230 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 3.0093 1.1860 -2.0159 37 1 2.7212 2.9429 -1.5343 38 1 5.8242 1.2396 0.1748 39 1 6.8904 2.5872 -0.2994 40 1 6.7499 1.2490 2.4419 41 1 8.0899 1.1411 1.2745 42 1 8.6025 2.8048 3.0289 43 1 8.4223 3.6014 1.4477 44 1 6.2462 3.3910 3.5784 45 1 7.2196 4.8424 3.2387 46 1 3.9271 5.3374 1.4616 47 1 4.1294 4.4778 3.0070 48 1 5.5483 6.9360 2.2093 49 1 3.2298 7.2825 2.8502 50 1 3.5925 6.3870 4.3451 51 1 2.7623 8.8722 4.9756 52 1 1.4489 11.3536 6.7805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661950825.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:56 Heat of formation + Delta-G solvation = -44.328756 kcal Electronic energy + Delta-G solvation = -29605.743136 eV Core-core repulsion = 25605.888779 eV Total energy + Delta-G solvation = -3999.854357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.88499 -38.47413 -38.05411 -36.90165 -35.30317 -33.77510 -33.07923 -32.35405 -31.46861 -31.05811 -27.64945 -26.07952 -24.64341 -24.42824 -24.04077 -23.16129 -21.67152 -20.97466 -20.52680 -19.29576 -18.87965 -17.80406 -17.29382 -16.34986 -15.85649 -15.77122 -15.20844 -15.10395 -14.76753 -14.64327 -14.52754 -14.35507 -14.25232 -13.88963 -13.62306 -13.35736 -13.25310 -12.98815 -12.76615 -12.69396 -12.44548 -12.36182 -12.11839 -11.77444 -11.63650 -11.46361 -11.40546 -11.37418 -11.13790 -11.07226 -10.95068 -10.82061 -10.60207 -10.56579 -10.34465 -10.29535 -10.15075 -9.45100 -9.42849 -8.73163 -8.31586 -7.89456 -7.73770 -6.34471 -3.75109 2.31838 2.69656 3.22528 3.30383 3.36771 3.50216 4.01115 4.06253 4.21767 4.35068 4.40912 4.51368 4.59533 4.65351 4.70559 4.76443 4.84727 4.90047 4.99112 5.08079 5.12355 5.20748 5.28594 5.29645 5.31642 5.35751 5.43056 5.43491 5.54889 5.56702 5.64297 5.72000 5.74918 5.76663 5.81915 5.92694 5.98394 6.00798 6.06177 6.10918 6.16150 6.25468 6.36096 6.41100 6.59311 7.20960 7.41938 7.61765 7.83223 8.09533 8.14432 8.69815 9.25281 9.63238 10.15089 10.83507 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.002287 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.736315 B =12242.235769 C =14026.967267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.118 4.118 4 H 0.119 0.881 5 C -0.148 4.148 6 C -0.194 4.194 7 H 0.122 0.878 8 C 0.540 3.460 9 O -0.528 6.528 10 N -0.605 5.605 11 C 0.109 3.891 12 C -0.136 4.136 13 C -0.123 4.123 14 C -0.122 4.122 15 C 0.151 3.849 16 H 0.071 0.929 17 C 0.070 3.930 18 N -0.676 5.676 19 C 0.058 3.942 20 C 0.443 3.557 21 O -0.584 6.584 22 N -0.566 5.566 23 C -0.298 4.298 24 H 0.102 0.898 25 C 0.020 3.980 26 N -0.903 5.903 27 Si 0.930 3.070 28 H -0.279 1.279 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.052 0.948 47 H 0.081 0.919 48 H 0.343 0.657 49 H 0.042 0.958 50 H 0.084 0.916 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.969 -25.388 -15.888 30.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.136 4.136 4 H 0.137 0.863 5 C -0.185 4.185 6 C -0.215 4.215 7 H 0.140 0.860 8 C 0.329 3.671 9 O -0.404 6.404 10 N -0.338 5.338 11 C -0.014 4.014 12 C -0.174 4.174 13 C -0.160 4.160 14 C -0.160 4.160 15 C 0.048 3.952 16 H 0.089 0.911 17 C -0.059 4.059 18 N -0.309 5.309 19 C -0.075 4.075 20 C 0.229 3.771 21 O -0.469 6.469 22 N -0.203 5.203 23 C -0.427 4.427 24 H 0.120 0.880 25 C -0.181 4.181 26 N -0.544 5.544 27 Si 0.757 3.243 28 H -0.205 1.205 29 H -0.210 1.210 30 H -0.194 1.194 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.111 0.889 46 H 0.070 0.930 47 H 0.099 0.901 48 H 0.161 0.839 49 H 0.060 0.940 50 H 0.102 0.898 51 H 0.226 0.774 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.391 -25.002 -15.015 29.360 hybrid contribution -0.638 0.910 -0.261 1.142 sum 2.753 -24.092 -15.276 28.659 Atomic orbital electron populations 1.21744 0.95083 1.01639 1.02311 1.21150 0.96398 0.93603 1.01993 1.22501 0.91418 0.98757 1.00958 0.86307 1.23084 1.02085 1.03154 0.90217 1.22398 0.97642 0.99181 1.02251 0.86032 1.19686 0.81933 0.85636 0.79865 1.90775 1.54209 1.47497 1.47954 1.48106 1.05226 1.21678 1.58835 1.21774 0.90595 0.92602 0.96413 1.21941 0.98745 0.98369 0.98371 1.21569 0.98097 0.95734 1.00622 1.21957 0.95905 1.00926 0.97194 1.21381 0.95640 0.84075 0.94077 0.91114 1.22516 0.93516 0.91125 0.98701 1.60047 1.29291 1.07136 1.34469 1.21554 0.92532 0.95140 0.98270 1.19881 0.87136 0.85835 0.84265 1.90501 1.16939 1.75215 1.64215 1.41873 1.10915 1.20645 1.46838 1.19699 0.96620 0.97639 1.28763 0.87970 1.25262 0.95144 0.99803 0.97880 1.69620 1.03476 1.38900 1.42434 0.85860 0.78831 0.81216 0.78380 1.20479 1.20966 1.19441 0.92643 0.92504 0.92346 0.91461 0.91776 0.87926 0.88317 0.89689 0.91313 0.91505 0.90879 0.91617 0.91867 0.91785 0.88932 0.92975 0.90072 0.83875 0.93995 0.89791 0.77444 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.87 37.16 0.37 -0.57 16 2 C -0.09 -0.60 6.22 -26.73 -0.17 -0.76 16 3 C -0.12 -0.98 5.25 -90.62 -0.48 -1.45 16 4 H 0.12 1.25 7.60 -51.93 -0.39 0.86 16 5 C -0.15 -1.08 9.88 -26.73 -0.26 -1.34 16 6 C -0.19 -1.62 4.98 -91.78 -0.46 -2.07 16 7 H 0.12 0.76 6.38 -51.93 -0.33 0.43 16 8 C 0.54 6.37 7.39 -10.99 -0.08 6.29 16 9 O -0.53 -8.13 11.66 5.55 0.06 -8.06 16 10 N -0.60 -6.34 2.97 -164.95 -0.49 -6.83 16 11 C 0.11 0.77 6.33 -3.71 -0.02 0.75 16 12 C -0.14 -0.95 6.08 -26.61 -0.16 -1.11 16 13 C -0.12 -1.08 5.88 -26.69 -0.16 -1.23 16 14 C -0.12 -1.44 5.18 -26.38 -0.14 -1.58 16 15 C 0.15 1.87 3.19 -67.37 -0.21 1.66 16 16 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 17 C 0.07 1.08 3.52 -3.82 -0.01 1.07 16 18 N -0.68 -12.05 5.55 -115.06 -0.64 -12.69 16 19 C 0.06 1.15 6.16 -4.98 -0.03 1.12 16 20 C 0.44 11.09 7.82 -10.99 -0.09 11.00 16 21 O -0.58 -16.45 15.78 5.55 0.09 -16.36 16 22 N -0.57 -15.10 5.29 -10.96 -0.06 -15.16 16 23 C -0.30 -8.60 9.68 -14.93 -0.14 -8.75 16 24 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 25 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 26 N -0.90 -25.45 13.05 55.50 0.72 -24.72 16 27 Si 0.93 21.67 29.55 -169.99 -5.02 16.64 16 28 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.33 7.88 -51.93 -0.41 -0.08 16 36 H 0.10 0.53 8.03 -51.92 -0.42 0.12 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.44 5.48 -51.93 -0.28 0.16 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.09 1.28 7.85 -51.93 -0.41 0.87 16 46 H 0.05 0.88 6.36 -51.93 -0.33 0.55 16 47 H 0.08 1.39 7.10 -51.93 -0.37 1.02 16 48 H 0.34 6.19 8.49 -39.29 -0.33 5.85 16 49 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 51 H 0.39 10.09 7.90 -40.82 -0.32 9.77 16 52 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 410.60 15.07 6.19 6.19 Total: -1.00 -33.15 410.60 -10.31 -43.47 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -9.03 Total: 14.04 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.14 Total: 3.48 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.46 Total: -59.40 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: 0.15 Total: -24.42 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.15 -10.31 -43.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661950825.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.861 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds