Wall clock time and date at job start Tue Mar 31 2020 19:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46736 * 2 1 4 4 H 1.09001 * 115.55180 * 29.33287 * 3 2 1 5 5 C 1.53001 * 117.50017 * 243.61763 * 3 2 1 6 6 C 1.52992 * 60.00153 * 252.51601 * 5 3 2 7 7 H 1.09003 * 117.50030 * 107.49040 * 6 5 3 8 8 C 1.50698 * 117.51668 * 252.51614 * 6 5 3 9 9 O 1.21288 * 120.00100 * 68.63371 * 8 6 5 10 10 N 1.34773 * 120.00497 * 248.63052 * 8 6 5 11 11 C 1.46934 * 120.62903 * 354.97443 * 10 8 6 12 12 C 1.53192 * 108.77537 * 233.58727 * 11 10 8 13 13 C 1.53040 * 109.31435 * 305.36176 * 12 11 10 14 14 C 1.53041 * 109.53675 * 61.36597 * 13 12 11 15 15 C 1.46926 * 120.63691 * 174.69472 * 10 8 6 16 16 H 1.08994 * 109.59213 * 246.20567 * 15 10 8 17 17 C 1.53004 * 109.58173 * 6.63108 * 15 10 8 18 18 N 1.46902 * 109.47099 * 181.05278 * 17 15 10 19 19 C 1.46895 * 111.00254 * 185.53927 * 18 17 15 20 20 C 1.50700 * 109.47214 * 179.97438 * 19 18 17 21 21 O 1.21288 * 119.99808 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99564 * 179.97438 * 20 19 18 23 23 C 1.37101 * 119.99649 * 180.02562 * 22 20 19 24 24 H 1.07998 * 119.99873 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00153 * 180.02562 * 23 22 20 26 26 N 1.31407 * 119.99852 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00147 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47411 * 89.99661 * 27 25 23 29 29 H 1.48504 * 109.46967 * 209.99716 * 27 25 23 30 30 H 1.48498 * 109.46766 * 329.99354 * 27 25 23 31 31 H 1.09002 * 109.46989 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47054 * 60.00207 * 1 2 3 33 33 H 1.08995 * 109.46987 * 299.99831 * 1 2 3 34 34 H 1.08995 * 109.47016 * 119.99900 * 2 1 3 35 35 H 1.09003 * 109.47309 * 240.00168 * 2 1 3 36 36 H 1.09008 * 117.49517 * 0.02562 * 5 3 2 37 37 H 1.09003 * 117.49822 * 145.02091 * 5 3 2 38 38 H 1.09002 * 109.58464 * 353.37152 * 11 10 8 39 39 H 1.09003 * 109.58387 * 113.79720 * 11 10 8 40 40 H 1.08991 * 109.49919 * 65.31841 * 12 11 10 41 41 H 1.09003 * 109.49597 * 185.41271 * 12 11 10 42 42 H 1.08993 * 109.46030 * 181.38962 * 13 12 11 43 43 H 1.09004 * 109.46129 * 301.35004 * 13 12 11 44 44 H 1.09005 * 109.49670 * 58.58737 * 14 13 12 45 45 H 1.08996 * 109.49863 * 178.65290 * 14 13 12 46 46 H 1.08999 * 109.46899 * 301.04908 * 17 15 10 47 47 H 1.08999 * 109.47150 * 61.04981 * 17 15 10 48 48 H 1.00901 * 111.00130 * 61.58118 * 18 17 15 49 49 H 1.08995 * 109.46910 * 299.99992 * 19 18 17 50 50 H 1.09003 * 109.47294 * 59.99720 * 19 18 17 51 51 H 0.96993 * 120.00752 * 0.02562 * 22 20 19 52 52 H 0.97002 * 119.99982 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1716 0.4817 5 6 2.8440 1.9077 -1.2158 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7720 0.1961 8 6 4.0228 2.8618 0.8919 9 8 3.2157 3.6162 1.3924 10 7 5.3423 3.1000 1.0277 11 6 6.3324 2.1390 0.5228 12 6 7.2938 1.7783 1.6596 13 6 7.8994 3.0600 2.2362 14 6 6.7854 3.9407 2.8068 15 6 5.8183 4.3286 1.6780 16 1 6.3351 4.9517 0.9482 17 6 4.6285 5.0948 2.2599 18 7 5.1043 6.3349 2.8873 19 6 4.0079 7.0330 3.5716 20 6 4.5331 8.2970 4.2021 21 8 5.7056 8.5874 4.0926 22 7 3.6999 9.1046 4.8877 23 6 4.1776 10.2548 5.4608 24 1 5.2216 10.5134 5.3633 25 6 3.3188 11.0872 6.1681 26 7 2.0486 10.7723 6.2871 27 14 3.9695 12.6547 6.9484 28 1 3.8561 13.7742 5.9793 29 1 3.1755 12.9694 8.1633 30 1 5.3941 12.4666 7.3230 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 3.0093 1.1860 -2.0159 37 1 2.7212 2.9429 -1.5343 38 1 5.8242 1.2396 0.1748 39 1 6.8904 2.5872 -0.2994 40 1 6.7499 1.2490 2.4419 41 1 8.0899 1.1411 1.2745 42 1 8.6025 2.8048 3.0289 43 1 8.4223 3.6014 1.4477 44 1 6.2462 3.3910 3.5784 45 1 7.2196 4.8424 3.2387 46 1 3.9271 5.3374 1.4616 47 1 4.1294 4.4778 3.0070 48 1 5.5483 6.9360 2.2093 49 1 3.2298 7.2825 2.8502 50 1 3.5925 6.3870 4.3451 51 1 2.7623 8.8722 4.9756 52 1 1.4489 11.3536 6.7805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661950825.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:55 Heat of formation + Delta-G solvation = -66.264229 kcal Electronic energy + Delta-G solvation = -29606.694329 eV Core-core repulsion = 25605.888779 eV Total energy + Delta-G solvation = -4000.805551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.76885 -40.18217 -39.12386 -37.71379 -36.76011 -35.84835 -33.90322 -33.33781 -32.97335 -32.33957 -29.02769 -27.37255 -26.17709 -25.15152 -24.78059 -24.35788 -22.66406 -21.67492 -21.27971 -21.10595 -20.00691 -19.73221 -18.35065 -17.53841 -17.33968 -16.83239 -16.63247 -16.35896 -16.05265 -15.74421 -15.52865 -15.32950 -15.26403 -15.17122 -14.91911 -14.54785 -14.34246 -14.15094 -13.88473 -13.52942 -13.45566 -13.39644 -13.28939 -13.01156 -12.97104 -12.93817 -12.67170 -12.44302 -12.18319 -12.13153 -12.04061 -11.94918 -11.89013 -11.61582 -11.53202 -11.41590 -11.19885 -10.86430 -10.49692 -10.35563 -10.05115 -9.63403 -9.18551 -8.48673 -5.98415 1.36722 1.39896 1.47191 1.53833 1.85639 2.00174 2.27867 2.84135 2.92756 3.17584 3.40079 3.58499 3.74626 3.75805 3.80814 3.92462 3.98565 4.06793 4.16427 4.24836 4.27904 4.29451 4.30019 4.43711 4.48313 4.51267 4.56014 4.57532 4.67878 4.75912 4.78849 4.89792 4.94532 4.98516 4.99724 5.02946 5.11875 5.15813 5.22950 5.23842 5.27284 5.30556 5.38254 5.47057 5.50227 5.61235 5.82595 6.03114 6.34851 6.45057 6.56213 7.08701 7.19588 7.51453 8.05987 8.69089 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.002287 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.736315 B =12242.235769 C =14026.967267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 C -0.128 4.128 4 H 0.086 0.914 5 C -0.133 4.133 6 C -0.191 4.191 7 H 0.153 0.847 8 C 0.529 3.471 9 O -0.576 6.576 10 N -0.602 5.602 11 C 0.103 3.897 12 C -0.130 4.130 13 C -0.119 4.119 14 C -0.116 4.116 15 C 0.154 3.846 16 H 0.077 0.923 17 C 0.086 3.914 18 N -0.679 5.679 19 C 0.072 3.928 20 C 0.441 3.559 21 O -0.618 6.618 22 N -0.573 5.573 23 C -0.335 4.335 24 H 0.081 0.919 25 C -0.016 4.016 26 N -0.922 5.922 27 Si 0.998 3.002 28 H -0.269 1.269 29 H -0.270 1.270 30 H -0.271 1.271 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.039 0.961 47 H 0.062 0.938 48 H 0.342 0.658 49 H 0.055 0.945 50 H 0.093 0.907 51 H 0.395 0.605 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.879 -27.420 -17.368 32.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.125 4.125 3 C -0.147 4.147 4 H 0.104 0.896 5 C -0.170 4.170 6 C -0.211 4.211 7 H 0.170 0.830 8 C 0.319 3.681 9 O -0.456 6.456 10 N -0.335 5.335 11 C -0.018 4.018 12 C -0.168 4.168 13 C -0.157 4.157 14 C -0.155 4.155 15 C 0.050 3.950 16 H 0.095 0.905 17 C -0.043 4.043 18 N -0.313 5.313 19 C -0.061 4.061 20 C 0.229 3.771 21 O -0.505 6.505 22 N -0.210 5.210 23 C -0.464 4.464 24 H 0.099 0.901 25 C -0.215 4.215 26 N -0.563 5.563 27 Si 0.821 3.179 28 H -0.194 1.194 29 H -0.195 1.195 30 H -0.196 1.196 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.153 0.847 37 H 0.100 0.900 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.057 0.943 47 H 0.080 0.920 48 H 0.160 0.840 49 H 0.073 0.927 50 H 0.111 0.889 51 H 0.229 0.771 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.304 -27.078 -16.516 32.009 hybrid contribution -0.947 1.533 0.199 1.813 sum 3.357 -25.545 -16.318 30.497 Atomic orbital electron populations 1.21758 0.95420 1.02197 1.01575 1.21137 0.96082 0.92161 1.03075 1.22473 0.91083 0.99405 1.01762 0.89607 1.23162 1.00439 1.03082 0.90333 1.22421 0.97883 0.98439 1.02388 0.82973 1.20390 0.81887 0.86244 0.79593 1.90751 1.55423 1.49414 1.50007 1.48216 1.05716 1.21432 1.58088 1.22111 0.90131 0.92797 0.96742 1.21927 0.99365 0.97453 0.98090 1.21556 0.96947 0.96207 1.00994 1.21853 0.96642 1.00351 0.96633 1.21211 0.94265 0.85016 0.94466 0.90531 1.22356 0.94573 0.89863 0.97467 1.60068 1.28710 1.07635 1.34855 1.21382 0.93139 0.92890 0.98671 1.20689 0.86544 0.86668 0.83240 1.90467 1.18447 1.76295 1.65254 1.41946 1.11183 1.20657 1.47240 1.19711 0.96214 0.99407 1.31065 0.90060 1.26138 0.95264 1.02621 0.97521 1.69692 1.04283 1.40021 1.42340 0.84862 0.78132 0.77050 0.77874 1.19448 1.19455 1.19605 0.91374 0.92547 0.93873 0.91333 0.89574 0.84720 0.89963 0.87042 0.89768 0.92235 0.87890 0.91184 0.91036 0.93410 0.91450 0.94273 0.92000 0.84009 0.92704 0.88928 0.77137 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.87 71.98 0.71 -1.05 16 2 C -0.09 -0.93 6.22 30.60 0.19 -0.74 16 3 C -0.13 -2.02 5.25 -10.79 -0.06 -2.08 16 4 H 0.09 1.94 7.60 -2.39 -0.02 1.92 16 5 C -0.13 -1.65 9.88 30.59 0.30 -1.35 16 6 C -0.19 -2.80 4.98 -11.54 -0.06 -2.86 16 7 H 0.15 1.27 6.38 -2.39 -0.02 1.26 16 8 C 0.53 12.30 7.39 87.66 0.65 12.95 16 9 O -0.58 -18.61 11.66 -3.06 -0.04 -18.65 16 10 N -0.60 -11.97 2.97 -794.18 -2.36 -14.32 16 11 C 0.10 1.12 6.33 86.36 0.55 1.67 16 12 C -0.13 -1.41 6.08 30.67 0.19 -1.23 16 13 C -0.12 -1.90 5.88 30.62 0.18 -1.72 16 14 C -0.12 -2.79 5.18 30.82 0.16 -2.63 16 15 C 0.15 3.84 3.19 45.12 0.14 3.98 16 16 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 17 C 0.09 2.76 3.52 86.30 0.30 3.07 16 18 N -0.68 -25.19 5.55 -517.94 -2.87 -28.06 16 19 C 0.07 2.95 6.16 85.56 0.53 3.48 16 20 C 0.44 22.85 7.82 87.66 0.69 23.53 16 21 O -0.62 -36.06 15.78 -3.05 -0.05 -36.11 16 22 N -0.57 -31.58 5.29 -306.99 -1.62 -33.20 16 23 C -0.33 -19.87 9.68 84.04 0.81 -19.06 16 24 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 25 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 26 N -0.92 -52.02 13.05 21.66 0.28 -51.74 16 27 Si 1.00 44.34 29.55 68.60 2.03 46.37 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 29 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 30 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 0.57 7.88 -2.39 -0.02 0.55 16 36 H 0.13 0.84 8.03 -2.38 -0.02 0.82 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.11 0.65 5.48 -2.39 -0.01 0.64 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.05 1.27 8.14 -2.38 -0.02 1.26 16 45 H 0.07 1.94 7.85 -2.39 -0.02 1.92 16 46 H 0.04 1.39 6.36 -2.39 -0.02 1.37 16 47 H 0.06 2.25 7.10 -2.39 -0.02 2.23 16 48 H 0.34 12.81 8.49 -89.69 -0.76 12.04 16 49 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 51 H 0.40 20.95 7.90 -92.71 -0.73 20.21 16 52 H 0.28 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -74.95 410.60 0.55 -74.39 By element: Atomic # 1 Polarization: 46.35 SS G_CDS: -0.57 Total: 45.78 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 5.75 Total: 15.54 kcal Atomic # 7 Polarization: -120.76 SS G_CDS: -6.57 Total: -127.33 kcal Atomic # 8 Polarization: -54.67 SS G_CDS: -0.08 Total: -54.76 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -74.95 0.55 -74.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661950825.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.130 kcal (2) G-P(sol) polarization free energy of solvation -74.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds