Wall clock time and date at job start Tue Mar 31 2020 19:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46811 * 2 1 4 4 H 1.08993 * 109.46955 * 305.00200 * 3 2 1 5 5 C 1.52997 * 109.47127 * 65.00188 * 3 2 1 6 6 C 1.52996 * 109.47131 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46972 * 299.99541 * 6 5 3 8 8 H 1.08996 * 109.47407 * 300.00487 * 7 6 5 9 9 C 1.50696 * 109.47303 * 180.02562 * 7 6 5 10 10 O 1.21284 * 120.00096 * 240.00239 * 9 7 6 11 11 N 1.34779 * 120.00208 * 60.00180 * 9 7 6 12 12 C 1.46496 * 120.00107 * 180.02562 * 11 9 7 13 13 C 1.53936 * 113.73088 * 253.76263 * 12 11 9 14 14 N 1.48188 * 86.10326 * 221.95654 * 13 12 11 15 15 C 1.46902 * 111.06953 * 137.52076 * 14 13 12 16 16 C 1.50700 * 109.46962 * 90.56731 * 15 14 13 17 17 O 1.21290 * 120.00248 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99790 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99793 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00250 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99970 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00153 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99856 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47184 * 90.00610 * 23 21 19 25 25 H 1.48501 * 109.47024 * 210.00517 * 23 21 19 26 26 H 1.48500 * 109.47020 * 330.00243 * 23 21 19 27 27 C 1.47961 * 90.79372 * 24.60095 * 14 13 12 28 28 C 1.53002 * 109.47128 * 60.00146 * 7 6 5 29 29 C 1.52999 * 109.46626 * 184.99727 * 3 2 1 30 30 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47170 * 300.00068 * 1 2 3 32 32 H 1.09001 * 109.47273 * 59.99848 * 1 2 3 33 33 H 1.08992 * 109.47188 * 240.00244 * 2 1 3 34 34 H 1.08997 * 109.46828 * 119.99963 * 2 1 3 35 35 H 1.09001 * 109.47289 * 299.99953 * 5 3 2 36 36 H 1.09004 * 109.47261 * 59.99697 * 5 3 2 37 37 H 1.08996 * 109.47134 * 180.02562 * 6 5 3 38 38 H 1.08992 * 109.47534 * 59.99520 * 6 5 3 39 39 H 0.96999 * 119.99538 * 359.97438 * 11 9 7 40 40 H 1.08997 * 112.94365 * 25.32761 * 12 11 9 41 41 H 1.09002 * 113.76130 * 336.24249 * 13 12 11 42 42 H 1.09006 * 113.75678 * 107.60792 * 13 12 11 43 43 H 1.08995 * 109.47125 * 210.56746 * 15 14 13 44 44 H 1.09000 * 109.47128 * 330.57116 * 15 14 13 45 45 H 0.96995 * 119.99981 * 359.97438 * 18 16 15 46 46 H 0.96997 * 119.99787 * 179.97438 * 22 21 19 47 47 H 1.09002 * 113.75432 * 221.08170 * 27 14 13 48 48 H 1.09005 * 113.75858 * 89.72324 * 27 14 13 49 49 H 1.09001 * 109.47600 * 179.97438 * 28 7 6 50 50 H 1.09004 * 109.47006 * 59.99907 * 28 7 6 51 51 H 1.08993 * 109.47839 * 299.99931 * 29 3 2 52 52 H 1.09000 * 109.47160 * 60.00369 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 1.6352 2.1266 1.3073 6 6 2.1445 3.5693 1.3071 7 6 3.6694 3.5717 1.1811 8 1 4.1044 3.0329 2.0228 9 6 4.1712 4.9927 1.1815 10 8 4.7915 5.4170 0.2296 11 7 3.9307 5.7921 2.2396 12 6 4.4181 7.1736 2.2397 13 6 5.6239 7.4050 3.1681 14 7 4.9519 8.6664 3.5596 15 6 5.0354 8.8811 5.0104 16 6 6.2780 9.6714 5.3305 17 8 7.0207 10.0218 4.4378 18 7 6.5636 9.9898 6.6086 19 6 7.6937 10.7092 6.8997 20 1 8.3554 11.0204 6.1050 21 6 7.9884 11.0370 8.2175 22 7 9.0720 11.7261 8.4966 23 14 6.8443 10.4980 9.5922 24 1 7.2642 9.1639 10.0913 25 1 6.9052 11.4832 10.7017 26 1 5.4539 10.4186 9.0766 27 6 3.6355 8.1065 3.1813 28 6 4.0742 2.8877 -0.1262 29 6 3.5648 1.4444 -0.1257 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5489 2.1252 1.3970 36 1 2.0698 1.5875 2.1492 37 1 1.8566 4.0564 2.2386 38 1 1.7096 4.1080 0.4653 39 1 3.4343 5.4528 3.0007 40 1 4.5536 7.5764 1.2360 41 1 5.7009 6.6789 3.9774 42 1 6.5645 7.5536 2.6375 43 1 4.1575 9.4323 5.3473 44 1 5.0767 7.9177 5.5185 45 1 5.9691 9.7106 7.3224 46 1 9.2774 11.9552 9.4165 47 1 2.9902 8.8146 2.6614 48 1 3.1296 7.5861 3.9945 49 1 5.1605 2.8898 -0.2163 50 1 3.6392 3.4265 -0.9681 51 1 3.9994 0.9054 0.7161 52 1 3.8531 0.9571 -1.0570 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665220741.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:42 Heat of formation + Delta-G solvation = -61.194547 kcal Electronic energy + Delta-G solvation = -28907.690268 eV Core-core repulsion = 24907.104556 eV Total energy + Delta-G solvation = -4000.585713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.81991 -39.80159 -38.41771 -37.77747 -34.43009 -34.16804 -33.81960 -31.67425 -31.25519 -30.20269 -29.36305 -26.17415 -25.82573 -24.72983 -23.31604 -23.09231 -21.70495 -20.52540 -20.33606 -19.87715 -19.37128 -18.37461 -17.37818 -16.67350 -16.18842 -15.95256 -15.36570 -15.28596 -15.07785 -14.91208 -14.56026 -14.44650 -14.32524 -13.90659 -13.63540 -13.50998 -13.27393 -13.19002 -12.87583 -12.73681 -12.55777 -12.39062 -12.29048 -12.17196 -12.03502 -11.68574 -11.62576 -11.51913 -11.31347 -11.21422 -11.18135 -10.91888 -10.76328 -10.68827 -10.60176 -10.37565 -9.96581 -9.88357 -9.55469 -9.22964 -8.86668 -8.31746 -8.16381 -6.29665 -3.81028 2.43214 2.89027 3.01562 3.05536 3.14229 3.74669 3.85477 4.10417 4.15021 4.18149 4.26528 4.36939 4.54229 4.59497 4.68846 4.73882 4.77364 4.88357 4.92350 5.02215 5.04169 5.10276 5.11042 5.15244 5.21398 5.23172 5.27279 5.38167 5.45464 5.49312 5.51039 5.55679 5.58065 5.62634 5.67497 5.69875 5.72962 5.80873 5.85666 5.88372 5.92765 5.97468 6.04702 6.09693 6.30147 6.42844 6.98873 7.27559 7.59352 8.03420 8.15899 8.61989 8.97166 9.43839 9.85837 10.83668 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022809 B = 0.001762 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.287224 B =15891.676378 C =16402.248522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.090 4.090 4 H 0.071 0.929 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.106 4.106 8 H 0.096 0.904 9 C 0.517 3.483 10 O -0.535 6.535 11 N -0.722 5.722 12 C 0.118 3.882 13 C -0.001 4.001 14 N -0.445 5.445 15 C 0.010 3.990 16 C 0.454 3.546 17 O -0.554 6.554 18 N -0.594 5.594 19 C -0.304 4.304 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.008 4.008 28 C -0.099 4.099 29 C -0.115 4.115 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.399 0.601 40 H 0.124 0.876 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.369 0.631 46 H 0.273 0.727 47 H 0.097 0.903 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.063 0.937 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.918 -24.726 -12.240 34.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.109 4.109 4 H 0.089 0.911 5 C -0.151 4.151 6 C -0.148 4.148 7 C -0.128 4.128 8 H 0.114 0.886 9 C 0.303 3.697 10 O -0.410 6.410 11 N -0.374 5.374 12 C 0.012 3.988 13 C -0.131 4.131 14 N -0.168 5.168 15 C -0.122 4.122 16 C 0.240 3.760 17 O -0.435 6.435 18 N -0.234 5.234 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.138 4.138 28 C -0.137 4.137 29 C -0.152 4.152 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.233 0.767 40 H 0.142 0.858 41 H 0.089 0.911 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.076 0.924 45 H 0.202 0.798 46 H 0.083 0.917 47 H 0.116 0.884 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.088 0.912 51 H 0.081 0.919 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.580 -23.422 -13.649 33.441 hybrid contribution -1.264 -1.114 2.353 2.894 sum -20.844 -24.536 -11.296 34.119 Atomic orbital electron populations 1.21831 0.95954 1.01494 1.01927 1.21571 0.95858 0.96358 1.01977 1.21235 0.95654 0.95835 0.98157 0.91077 1.21629 1.00892 0.94841 0.97720 1.21530 0.92995 0.97779 1.02469 1.21381 0.97314 0.92801 1.01277 0.88558 1.20752 0.79062 0.87740 0.82113 1.90723 1.40010 1.75761 1.34555 1.46115 1.57943 1.12749 1.20566 1.23033 0.94181 0.80442 1.01104 1.24533 0.99651 0.90723 0.98187 1.68390 1.04746 1.29262 1.14362 1.22501 0.99499 1.00105 0.90117 1.19568 0.87908 0.85321 0.83244 1.90577 1.50871 1.56369 1.45678 1.42213 1.23880 1.51141 1.06195 1.19434 0.99538 1.29277 0.95016 0.86303 1.25031 0.96705 0.97183 0.97280 1.69623 1.24608 1.37959 1.20064 0.86670 0.80626 0.79356 0.82699 1.19719 1.20179 1.19568 1.24414 0.94457 0.96926 0.97958 1.21351 1.01613 0.94836 0.95917 1.21628 0.95006 0.96473 1.02105 0.92955 0.92472 0.92803 0.92040 0.92020 0.91365 0.91713 0.91511 0.91285 0.76679 0.85792 0.91142 0.88362 0.89177 0.92358 0.79841 0.91653 0.88439 0.91095 0.91108 0.91164 0.91875 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.67 37.16 0.36 -0.31 16 2 C -0.12 -0.55 5.40 -26.73 -0.14 -0.70 16 3 C -0.09 -0.46 2.19 -90.62 -0.20 -0.66 16 4 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 5 C -0.11 -0.53 4.96 -26.73 -0.13 -0.66 16 6 C -0.11 -0.60 5.10 -26.73 -0.14 -0.73 16 7 C -0.11 -0.76 2.52 -91.77 -0.23 -0.99 16 8 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 9 C 0.52 5.42 7.15 -10.99 -0.08 5.34 16 10 O -0.53 -7.98 15.61 5.55 0.09 -7.89 16 11 N -0.72 -6.45 5.26 -54.95 -0.29 -6.74 16 12 C 0.12 1.36 4.39 -69.63 -0.31 1.06 16 13 C 0.00 -0.01 7.77 -2.63 -0.02 -0.03 16 14 N -0.45 -7.01 5.65 -239.66 -1.35 -8.36 16 15 C 0.01 0.17 5.28 -4.97 -0.03 0.14 16 16 C 0.45 10.51 7.83 -10.98 -0.09 10.42 16 17 O -0.55 -15.41 16.01 5.55 0.09 -15.32 16 18 N -0.59 -14.27 5.09 -10.96 -0.06 -14.33 16 19 C -0.30 -8.70 10.16 -14.93 -0.15 -8.86 16 20 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.98 13.96 55.50 0.77 -25.21 16 23 Si 0.88 19.36 27.74 -169.99 -4.71 14.65 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 27 C -0.01 -0.08 7.70 -2.76 -0.02 -0.11 16 28 C -0.10 -0.77 4.50 -26.70 -0.12 -0.89 16 29 C -0.11 -0.66 5.21 -26.70 -0.14 -0.80 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.24 6.57 -51.92 -0.34 -0.10 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.29 6.56 -51.93 -0.34 -0.05 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.29 7.56 -51.93 -0.39 -0.11 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.40 2.40 8.13 -40.82 -0.33 2.07 16 40 H 0.12 1.68 7.51 -51.93 -0.39 1.29 16 41 H 0.07 0.91 7.49 -51.93 -0.39 0.52 16 42 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 44 H 0.06 0.80 7.39 -51.93 -0.38 0.42 16 45 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 46 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 49 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 50 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 51 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 52 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 407.91 15.07 6.15 6.15 Total: -1.00 -35.47 407.91 -9.95 -45.42 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -9.10 Total: 8.40 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -1.53 Total: 3.24 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.92 Total: -54.64 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.18 Total: -23.21 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.65 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.47 -9.95 -45.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665220741.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.778 kcal (2) G-P(sol) polarization free energy of solvation -35.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds