Wall clock time and date at job start Tue Mar 31 2020 19:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46811 * 2 1 4 4 H 1.08993 * 109.46955 * 305.00200 * 3 2 1 5 5 C 1.52997 * 109.47127 * 65.00188 * 3 2 1 6 6 C 1.52996 * 109.47131 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46972 * 299.99541 * 6 5 3 8 8 H 1.08996 * 109.47407 * 300.00487 * 7 6 5 9 9 C 1.50696 * 109.47303 * 180.02562 * 7 6 5 10 10 O 1.21284 * 120.00096 * 240.00239 * 9 7 6 11 11 N 1.34779 * 120.00208 * 60.00180 * 9 7 6 12 12 C 1.46496 * 120.00107 * 180.02562 * 11 9 7 13 13 C 1.53936 * 113.73088 * 253.76263 * 12 11 9 14 14 N 1.48188 * 86.10326 * 221.95654 * 13 12 11 15 15 C 1.46902 * 111.06953 * 137.52076 * 14 13 12 16 16 C 1.50700 * 109.46962 * 90.56731 * 15 14 13 17 17 O 1.21290 * 120.00248 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99790 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99793 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00250 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99970 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00153 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99856 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47184 * 90.00610 * 23 21 19 25 25 H 1.48501 * 109.47024 * 210.00517 * 23 21 19 26 26 H 1.48500 * 109.47020 * 330.00243 * 23 21 19 27 27 C 1.47961 * 90.79372 * 24.60095 * 14 13 12 28 28 C 1.53002 * 109.47128 * 60.00146 * 7 6 5 29 29 C 1.52999 * 109.46626 * 184.99727 * 3 2 1 30 30 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47170 * 300.00068 * 1 2 3 32 32 H 1.09001 * 109.47273 * 59.99848 * 1 2 3 33 33 H 1.08992 * 109.47188 * 240.00244 * 2 1 3 34 34 H 1.08997 * 109.46828 * 119.99963 * 2 1 3 35 35 H 1.09001 * 109.47289 * 299.99953 * 5 3 2 36 36 H 1.09004 * 109.47261 * 59.99697 * 5 3 2 37 37 H 1.08996 * 109.47134 * 180.02562 * 6 5 3 38 38 H 1.08992 * 109.47534 * 59.99520 * 6 5 3 39 39 H 0.96999 * 119.99538 * 359.97438 * 11 9 7 40 40 H 1.08997 * 112.94365 * 25.32761 * 12 11 9 41 41 H 1.09002 * 113.76130 * 336.24249 * 13 12 11 42 42 H 1.09006 * 113.75678 * 107.60792 * 13 12 11 43 43 H 1.08995 * 109.47125 * 210.56746 * 15 14 13 44 44 H 1.09000 * 109.47128 * 330.57116 * 15 14 13 45 45 H 0.96995 * 119.99981 * 359.97438 * 18 16 15 46 46 H 0.96997 * 119.99787 * 179.97438 * 22 21 19 47 47 H 1.09002 * 113.75432 * 221.08170 * 27 14 13 48 48 H 1.09005 * 113.75858 * 89.72324 * 27 14 13 49 49 H 1.09001 * 109.47600 * 179.97438 * 28 7 6 50 50 H 1.09004 * 109.47006 * 59.99907 * 28 7 6 51 51 H 1.08993 * 109.47839 * 299.99931 * 29 3 2 52 52 H 1.09000 * 109.47160 * 60.00369 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 1.6352 2.1266 1.3073 6 6 2.1445 3.5693 1.3071 7 6 3.6694 3.5717 1.1811 8 1 4.1044 3.0329 2.0228 9 6 4.1712 4.9927 1.1815 10 8 4.7915 5.4170 0.2296 11 7 3.9307 5.7921 2.2396 12 6 4.4181 7.1736 2.2397 13 6 5.6239 7.4050 3.1681 14 7 4.9519 8.6664 3.5596 15 6 5.0354 8.8811 5.0104 16 6 6.2780 9.6714 5.3305 17 8 7.0207 10.0218 4.4378 18 7 6.5636 9.9898 6.6086 19 6 7.6937 10.7092 6.8997 20 1 8.3554 11.0204 6.1050 21 6 7.9884 11.0370 8.2175 22 7 9.0720 11.7261 8.4966 23 14 6.8443 10.4980 9.5922 24 1 7.2642 9.1639 10.0913 25 1 6.9052 11.4832 10.7017 26 1 5.4539 10.4186 9.0766 27 6 3.6355 8.1065 3.1813 28 6 4.0742 2.8877 -0.1262 29 6 3.5648 1.4444 -0.1257 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5489 2.1252 1.3970 36 1 2.0698 1.5875 2.1492 37 1 1.8566 4.0564 2.2386 38 1 1.7096 4.1080 0.4653 39 1 3.4343 5.4528 3.0007 40 1 4.5536 7.5764 1.2360 41 1 5.7009 6.6789 3.9774 42 1 6.5645 7.5536 2.6375 43 1 4.1575 9.4323 5.3473 44 1 5.0767 7.9177 5.5185 45 1 5.9691 9.7106 7.3224 46 1 9.2774 11.9552 9.4165 47 1 2.9902 8.8146 2.6614 48 1 3.1296 7.5861 3.9945 49 1 5.1605 2.8898 -0.2163 50 1 3.6392 3.4265 -0.9681 51 1 3.9994 0.9054 0.7161 52 1 3.8531 0.9571 -1.0570 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665220741.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:41 Heat of formation + Delta-G solvation = -89.108619 kcal Electronic energy + Delta-G solvation = -28908.900713 eV Core-core repulsion = 24907.104556 eV Total energy + Delta-G solvation = -4001.796158 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.73328 -40.77085 -39.72114 -38.88449 -36.00758 -35.19027 -34.71077 -33.75676 -31.82583 -31.18888 -30.03110 -27.39963 -27.14257 -25.68115 -24.47745 -23.55434 -22.37647 -21.35301 -21.28686 -20.91051 -20.54864 -20.25327 -18.15467 -17.88188 -17.64048 -16.78012 -16.60311 -16.51942 -16.25610 -15.71101 -15.51041 -15.33072 -15.08957 -14.88865 -14.82007 -14.58099 -14.37050 -14.12991 -13.97589 -13.84311 -13.72396 -13.52527 -13.06159 -13.03249 -12.75278 -12.73545 -12.43157 -12.42070 -12.40361 -12.10676 -11.98424 -11.97791 -11.85613 -11.62272 -11.50445 -11.34909 -11.20575 -10.81792 -10.68632 -10.46421 -10.24851 -10.11415 -9.69852 -8.41144 -6.02711 1.29800 1.36271 1.45491 1.60827 1.97113 2.07468 2.23745 2.68011 3.13959 3.15689 3.50470 3.58784 3.72566 3.77217 3.80973 4.03700 4.09274 4.14943 4.19118 4.23893 4.30853 4.36848 4.44736 4.45821 4.47640 4.56762 4.60840 4.64398 4.69923 4.77649 4.79500 4.83400 4.95573 4.99130 5.08536 5.17933 5.22240 5.23825 5.28558 5.32064 5.34915 5.37626 5.41701 5.45675 5.53852 5.58876 5.66842 5.88873 6.00144 6.55578 6.60227 6.88921 7.27115 7.40226 7.99508 8.76926 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022809 B = 0.001762 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.287224 B =15891.676378 C =16402.248522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.089 4.089 4 H 0.061 0.939 5 C -0.109 4.109 6 C -0.105 4.105 7 C -0.097 4.097 8 H 0.118 0.882 9 C 0.513 3.487 10 O -0.588 6.588 11 N -0.703 5.703 12 C 0.129 3.871 13 C -0.006 4.006 14 N -0.489 5.489 15 C 0.024 3.976 16 C 0.448 3.552 17 O -0.614 6.614 18 N -0.592 5.592 19 C -0.331 4.331 20 H 0.050 0.950 21 C -0.017 4.017 22 N -0.937 5.937 23 Si 0.969 3.031 24 H -0.256 1.256 25 H -0.276 1.276 26 H -0.228 1.228 27 C 0.013 3.987 28 C -0.099 4.099 29 C -0.109 4.109 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.419 0.581 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.125 0.875 44 H 0.098 0.902 45 H 0.390 0.610 46 H 0.279 0.721 47 H 0.107 0.893 48 H 0.114 0.886 49 H 0.050 0.950 50 H 0.050 0.950 51 H 0.072 0.928 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.517 -27.492 -9.361 38.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.108 4.108 4 H 0.079 0.921 5 C -0.147 4.147 6 C -0.143 4.143 7 C -0.119 4.119 8 H 0.135 0.865 9 C 0.301 3.699 10 O -0.467 6.467 11 N -0.356 5.356 12 C 0.022 3.978 13 C -0.136 4.136 14 N -0.213 5.213 15 C -0.107 4.107 16 C 0.236 3.764 17 O -0.498 6.498 18 N -0.234 5.234 19 C -0.461 4.461 20 H 0.068 0.932 21 C -0.216 4.216 22 N -0.577 5.577 23 Si 0.789 3.211 24 H -0.180 1.180 25 H -0.201 1.201 26 H -0.151 1.151 27 C -0.115 4.115 28 C -0.137 4.137 29 C -0.146 4.146 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.257 0.743 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.143 0.857 44 H 0.116 0.884 45 H 0.226 0.774 46 H 0.088 0.912 47 H 0.125 0.875 48 H 0.132 0.868 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.091 0.909 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.236 -26.220 -10.755 37.290 hybrid contribution 0.296 -0.207 1.298 1.347 sum -23.940 -26.427 -9.457 36.891 Atomic orbital electron populations 1.21829 0.95651 1.01694 1.02005 1.21544 0.96082 0.95826 1.02079 1.21212 0.94817 0.96300 0.98424 0.92066 1.21619 1.01506 0.94077 0.97474 1.21534 0.91077 0.98578 1.03091 1.21394 0.98793 0.90272 1.01399 0.86461 1.21424 0.78040 0.88972 0.81466 1.90711 1.42448 1.76921 1.36654 1.45900 1.57308 1.11472 1.20919 1.22620 0.93565 0.82073 0.99543 1.24532 0.98827 0.91051 0.99211 1.68291 1.08013 1.30777 1.14173 1.22453 0.96184 1.00959 0.91150 1.21041 0.89249 0.84065 0.82032 1.90556 1.53453 1.58365 1.47409 1.42020 1.22929 1.50981 1.07479 1.18993 1.01130 1.31743 0.94186 0.93224 1.26184 0.98749 0.96284 1.00342 1.69820 1.27280 1.39307 1.21339 0.85312 0.79477 0.79137 0.77219 1.18006 1.20099 1.15082 1.24457 0.92385 0.96352 0.98317 1.21315 1.00291 0.96198 0.95934 1.21583 0.95697 0.94872 1.02455 0.92726 0.91917 0.93201 0.92393 0.91504 0.90417 0.90632 0.89315 0.92500 0.74271 0.88606 0.89120 0.92626 0.85702 0.88442 0.77373 0.91158 0.87494 0.86829 0.93109 0.93082 0.90934 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.67 71.98 0.70 -0.33 16 2 C -0.12 -0.85 5.40 30.60 0.17 -0.69 16 3 C -0.09 -0.75 2.19 -10.79 -0.02 -0.78 16 4 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 5 C -0.11 -0.67 4.96 30.59 0.15 -0.52 16 6 C -0.11 -0.83 5.10 30.59 0.16 -0.68 16 7 C -0.10 -1.22 2.52 -11.54 -0.03 -1.25 16 8 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 9 C 0.51 10.31 7.15 87.66 0.63 10.94 16 10 O -0.59 -18.28 15.61 -3.04 -0.05 -18.33 16 11 N -0.70 -10.77 5.26 -446.14 -2.35 -13.12 16 12 C 0.13 2.80 4.39 46.55 0.20 3.00 16 13 C -0.01 -0.17 7.77 86.37 0.67 0.50 16 14 N -0.49 -14.50 5.65 -912.15 -5.15 -19.66 16 15 C 0.02 0.70 5.28 85.56 0.45 1.16 16 16 C 0.45 20.64 7.83 87.66 0.69 21.33 16 17 O -0.61 -35.85 16.01 -3.06 -0.05 -35.90 16 18 N -0.59 -28.02 5.09 -306.99 -1.56 -29.58 16 19 C -0.33 -19.76 10.16 84.04 0.85 -18.90 16 20 H 0.05 3.56 7.39 -2.91 -0.02 3.54 16 21 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 22 N -0.94 -57.14 13.96 21.66 0.30 -56.84 16 23 Si 0.97 38.33 27.74 68.60 1.90 40.23 16 24 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 25 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 26 H -0.23 -7.40 6.52 99.48 0.65 -6.76 16 27 C 0.01 0.23 7.70 86.41 0.67 0.90 16 28 C -0.10 -1.54 4.50 30.61 0.14 -1.40 16 29 C -0.11 -1.14 5.21 30.61 0.16 -0.98 16 30 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.35 6.57 -2.38 -0.02 0.33 16 32 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.08 0.38 6.56 -2.39 -0.02 0.37 16 36 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 37 H 0.09 0.34 7.56 -2.39 -0.02 0.33 16 38 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.42 3.06 8.13 -92.71 -0.75 2.31 16 40 H 0.10 2.68 7.51 -2.39 -0.02 2.67 16 41 H 0.09 2.11 7.49 -2.39 -0.02 2.09 16 42 H 0.06 1.99 8.14 -2.38 -0.02 1.98 16 43 H 0.13 2.82 8.08 -2.39 -0.02 2.80 16 44 H 0.10 2.12 7.39 -2.39 -0.02 2.11 16 45 H 0.39 14.89 5.76 -92.71 -0.53 14.36 16 46 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 47 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.11 1.09 7.89 -2.38 -0.02 1.07 16 49 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 50 H 0.05 0.97 8.10 -2.38 -0.02 0.95 16 51 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -88.08 407.91 -1.34 -89.42 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.43 Total: 31.97 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 6.04 Total: 11.80 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -8.76 Total: -119.20 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -0.10 Total: -54.22 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.90 Total: 40.23 kcal Total: -88.08 -1.34 -89.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665220741.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.312 kcal (2) G-P(sol) polarization free energy of solvation -88.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds