Wall clock time and date at job start Tue Mar 31 2020 20:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46793 * 2 1 4 4 H 1.09006 * 109.47271 * 55.00090 * 3 2 1 5 5 C 1.52998 * 109.47489 * 295.00119 * 3 2 1 6 6 C 1.52999 * 109.47125 * 174.99751 * 3 2 1 7 7 C 1.53001 * 109.47462 * 185.00125 * 6 3 2 8 8 C 1.50695 * 109.47464 * 180.02562 * 7 6 3 9 9 O 1.21290 * 119.99798 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00331 * 180.02562 * 8 7 6 11 11 C 1.47854 * 126.92530 * 0.02562 * 10 8 7 12 12 C 1.56016 * 105.11378 * 181.91413 * 11 10 8 13 13 H 1.09002 * 116.25929 * 158.85369 * 12 11 10 14 14 C 1.57080 * 99.60080 * 32.80550 * 12 11 10 15 15 C 1.49281 * 126.92617 * 179.71147 * 10 8 7 16 16 H 1.08996 * 116.12531 * 16.02064 * 15 10 8 17 17 C 1.58436 * 103.73171 * 246.73282 * 15 10 8 18 18 N 1.48279 * 104.80059 * 288.57847 * 17 15 10 19 19 C 1.46906 * 111.00292 * 122.84869 * 18 17 15 20 20 C 1.50692 * 109.46971 * 78.75475 * 19 18 17 21 21 O 1.21289 * 120.00294 * 359.97438 * 20 19 18 22 22 N 1.34775 * 120.00036 * 180.02562 * 20 19 18 23 23 C 1.37095 * 120.00319 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00110 * 359.97438 * 23 22 20 25 25 C 1.38952 * 119.99835 * 179.97438 * 23 22 20 26 26 N 1.31406 * 120.00340 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99856 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.46983 * 90.00204 * 27 25 23 29 29 H 1.48498 * 109.47257 * 210.00612 * 27 25 23 30 30 H 1.48503 * 109.46885 * 330.00407 * 27 25 23 31 31 H 1.09000 * 109.46925 * 60.00400 * 1 2 3 32 32 H 1.09001 * 109.46630 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47228 * 299.99603 * 1 2 3 34 34 H 1.09000 * 109.47228 * 240.00397 * 2 1 3 35 35 H 1.08998 * 109.47203 * 120.00065 * 2 1 3 36 36 H 1.09005 * 109.46436 * 299.99881 * 5 3 2 37 37 H 1.08999 * 109.47056 * 180.02562 * 5 3 2 38 38 H 1.08995 * 109.47104 * 60.00046 * 5 3 2 39 39 H 1.09004 * 109.47173 * 305.00535 * 6 3 2 40 40 H 1.09004 * 109.47333 * 65.00019 * 6 3 2 41 41 H 1.08998 * 109.46898 * 300.00526 * 7 6 3 42 42 H 1.09005 * 109.47039 * 60.00192 * 7 6 3 43 43 H 1.09002 * 110.31815 * 300.82562 * 11 10 8 44 44 H 1.09005 * 110.31892 * 63.00319 * 11 10 8 45 45 H 1.09002 * 112.35692 * 64.33125 * 14 12 11 46 46 H 1.09000 * 112.36091 * 191.74585 * 14 12 11 47 47 H 1.09000 * 110.19654 * 169.89496 * 17 15 10 48 48 H 1.08999 * 110.79323 * 47.56195 * 17 15 10 49 49 H 1.09002 * 109.46576 * 198.75459 * 19 18 17 50 50 H 1.08999 * 109.46726 * 318.75324 * 19 18 17 51 51 H 0.97003 * 120.00251 * 359.97438 * 22 20 19 52 52 H 0.96999 * 120.00049 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1258 7 6 4.0644 2.8851 0.2512 8 6 5.5663 2.8870 0.3745 9 8 6.1770 1.8391 0.3636 10 7 6.2309 4.0530 0.4979 11 6 5.6451 5.4102 0.5306 12 6 6.8648 6.3772 0.6369 13 1 6.6930 7.4066 0.3220 14 6 7.9212 5.5583 -0.1883 15 6 7.7063 4.2342 0.6356 16 1 8.3223 3.3755 0.3687 17 6 7.8799 4.8028 2.1042 18 7 7.3579 6.1891 2.0378 19 6 6.2742 6.3906 3.0089 20 6 6.8613 6.5933 4.3819 21 8 8.0642 6.5715 4.5364 22 7 6.0499 6.7978 5.4384 23 6 6.5840 6.9817 6.6875 24 1 7.6550 6.9623 6.8252 25 6 5.7473 7.1931 7.7766 26 7 4.4441 7.2162 7.6093 27 14 6.4750 7.4429 9.4788 28 1 6.7224 8.8898 9.7039 29 1 5.5248 6.9381 10.5023 30 1 7.7562 6.6995 9.5834 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0699 1.5875 -2.1491 37 1 1.9989 3.1541 -1.3074 38 1 0.5489 2.1253 -1.3968 39 1 3.8570 0.8800 1.0114 40 1 4.0030 0.9837 -0.7596 41 1 3.7721 3.4494 -0.6343 42 1 3.6263 3.3458 1.1366 43 1 5.0874 5.6039 -0.3857 44 1 4.9968 5.5218 1.3997 45 1 7.6361 5.4498 -1.2348 46 1 8.9306 5.9546 -0.0787 47 1 8.9335 4.8079 2.3836 48 1 7.3026 4.2147 2.8176 49 1 5.6940 7.2697 2.7284 50 1 5.6258 5.5145 3.0167 51 1 5.0879 6.8149 5.3149 52 1 3.8601 7.3642 8.3695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665421478.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:42 Heat of formation + Delta-G solvation = -51.070894 kcal Electronic energy + Delta-G solvation = -30045.995702 eV Core-core repulsion = 26045.848984 eV Total energy + Delta-G solvation = -4000.146718 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.19833 -39.03495 -37.88466 -37.20548 -34.19125 -33.61025 -32.57654 -31.33762 -30.85933 -29.75561 -28.95197 -26.66632 -26.17253 -24.96118 -24.13844 -22.90923 -21.14864 -20.53917 -20.11279 -19.46523 -18.50213 -17.81656 -17.34924 -16.77541 -16.08472 -15.90087 -15.37150 -15.29033 -14.73951 -14.67173 -14.33573 -14.09340 -13.88580 -13.81765 -13.46212 -13.34370 -12.98871 -12.84034 -12.64226 -12.38520 -12.26697 -12.11529 -12.04786 -11.96708 -11.91271 -11.63427 -11.52429 -11.37538 -11.20376 -11.18297 -11.10313 -10.84853 -10.82996 -10.77642 -10.68456 -10.39164 -10.21292 -9.88694 -9.49467 -8.85780 -8.43693 -7.96350 -7.91190 -6.41226 -3.81753 2.56074 2.76393 3.18167 3.26678 3.32570 3.78576 3.91092 4.13107 4.20813 4.33262 4.43307 4.50550 4.59097 4.62856 4.78165 4.85057 4.93802 5.02339 5.05195 5.11140 5.19500 5.22377 5.25480 5.28175 5.31182 5.40677 5.43986 5.50535 5.61509 5.63647 5.67338 5.71073 5.72467 5.75140 5.76235 5.77351 5.82098 5.82294 5.93049 5.99347 6.05489 6.15717 6.20353 6.26794 6.29580 6.93837 7.10757 7.43711 7.55767 8.06781 8.08076 8.62675 9.19264 9.55105 10.07413 10.76689 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009579 B = 0.002808 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.503828 B = 9970.519603 C =12097.702099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.094 4.094 4 H 0.072 0.928 5 C -0.151 4.151 6 C -0.098 4.098 7 C -0.137 4.137 8 C 0.530 3.470 9 O -0.544 6.544 10 N -0.622 5.622 11 C 0.059 3.941 12 C 0.053 3.947 13 H 0.134 0.866 14 C -0.130 4.130 15 C 0.105 3.895 16 H 0.126 0.874 17 C 0.043 3.957 18 N -0.487 5.487 19 C 0.036 3.964 20 C 0.445 3.555 21 O -0.574 6.574 22 N -0.567 5.567 23 C -0.297 4.297 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.903 5.903 27 Si 0.929 3.071 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.092 0.908 48 H 0.060 0.940 49 H 0.088 0.912 50 H 0.052 0.948 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 -7.194 -20.161 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.113 4.113 4 H 0.090 0.910 5 C -0.208 4.208 6 C -0.136 4.136 7 C -0.177 4.177 8 C 0.320 3.680 9 O -0.421 6.421 10 N -0.358 5.358 11 C -0.065 4.065 12 C -0.055 4.055 13 H 0.152 0.848 14 C -0.169 4.169 15 C 0.002 3.998 16 H 0.143 0.857 17 C -0.086 4.086 18 N -0.211 5.211 19 C -0.096 4.096 20 C 0.230 3.770 21 O -0.457 6.457 22 N -0.204 5.204 23 C -0.427 4.427 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.545 5.545 27 Si 0.756 3.244 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.194 1.194 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.110 0.890 48 H 0.079 0.921 49 H 0.107 0.893 50 H 0.070 0.930 51 H 0.224 0.776 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.592 -7.462 -19.760 21.850 hybrid contribution -1.191 -0.273 0.779 1.449 sum -6.783 -7.736 -18.981 21.590 Atomic orbital electron populations 1.21829 0.95941 1.01474 1.01890 1.21558 0.95781 0.96244 1.02137 1.21209 0.95138 0.96417 0.98522 0.90998 1.21944 1.01291 1.00378 0.97162 1.21399 0.94258 0.94590 1.03386 1.21730 0.91577 1.00225 1.04166 1.20453 0.90006 0.82029 0.75547 1.90698 1.70069 1.30546 1.50782 1.49343 1.08116 1.05703 1.72598 1.23363 0.98026 0.82679 1.02419 1.24760 0.92125 0.98483 0.90171 0.84823 1.23933 1.00500 0.94381 0.98059 1.24701 0.81175 0.97759 0.96155 0.85651 1.24073 1.02458 0.87836 0.94257 1.64571 1.30577 1.24764 1.01168 1.22135 0.93012 1.01162 0.93294 1.19717 0.87655 0.84493 0.85178 1.90523 1.14590 1.55506 1.85103 1.41853 1.08693 1.63236 1.06627 1.19684 0.94315 1.45672 0.82979 0.87976 1.25241 0.95140 0.97472 1.00101 1.69604 1.02398 1.50121 1.32372 0.85873 0.78700 0.78612 0.81206 1.20394 1.20956 1.19443 0.92574 0.92949 0.92705 0.92037 0.91881 0.92749 0.92646 0.92485 0.91140 0.91292 0.88967 0.88996 0.91030 0.90182 0.89957 0.88430 0.88951 0.92113 0.89345 0.92980 0.77628 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.67 37.16 0.36 -0.69 16 2 C -0.12 -0.92 5.40 -26.73 -0.14 -1.06 16 3 C -0.09 -0.75 2.39 -90.62 -0.22 -0.96 16 4 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 5 C -0.15 -1.04 8.70 37.16 0.32 -0.71 16 6 C -0.10 -0.96 3.97 -26.73 -0.11 -1.07 16 7 C -0.14 -1.34 4.74 -27.88 -0.13 -1.47 16 8 C 0.53 7.03 7.89 -10.99 -0.09 6.94 16 9 O -0.54 -9.15 16.32 5.55 0.09 -9.06 16 10 N -0.62 -7.57 2.95 -155.09 -0.46 -8.03 16 11 C 0.06 0.59 5.64 -1.69 -0.01 0.59 16 12 C 0.05 0.57 5.14 -62.32 -0.32 0.25 16 13 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 14 C -0.13 -1.29 6.85 -22.11 -0.15 -1.45 16 15 C 0.11 1.31 5.34 -60.98 -0.33 0.98 16 16 H 0.13 1.56 8.05 -51.93 -0.42 1.14 16 17 C 0.04 0.66 5.70 -0.06 0.00 0.66 16 18 N -0.49 -7.56 4.81 -216.51 -1.04 -8.60 16 19 C 0.04 0.61 4.07 -4.98 -0.02 0.58 16 20 C 0.44 10.41 7.67 -10.99 -0.08 10.33 16 21 O -0.57 -15.58 15.58 5.55 0.09 -15.50 16 22 N -0.57 -14.29 5.29 -10.97 -0.06 -14.35 16 23 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 24 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 27 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 31 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.36 6.56 -51.93 -0.34 0.02 16 38 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 39 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.09 0.72 6.56 -51.93 -0.34 0.38 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.85 5.55 -51.93 -0.29 0.56 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 48 H 0.06 1.09 7.40 -51.93 -0.38 0.71 16 49 H 0.09 1.31 8.00 -51.93 -0.42 0.89 16 50 H 0.05 0.84 6.17 -51.93 -0.32 0.52 16 51 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 52 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 405.92 15.07 6.12 6.12 Total: -1.00 -33.38 405.92 -9.65 -43.04 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.94 Total: 9.06 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -1.16 Total: 4.98 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.83 Total: -54.76 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: 0.18 Total: -24.56 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.38 -9.65 -43.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665421478.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.035 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds