Wall clock time and date at job start Tue Mar 31 2020 20:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46793 * 2 1 4 4 H 1.09006 * 109.47271 * 55.00090 * 3 2 1 5 5 C 1.52998 * 109.47489 * 295.00119 * 3 2 1 6 6 C 1.52999 * 109.47125 * 174.99751 * 3 2 1 7 7 C 1.53001 * 109.47462 * 185.00125 * 6 3 2 8 8 C 1.50695 * 109.47464 * 180.02562 * 7 6 3 9 9 O 1.21290 * 119.99798 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00331 * 180.02562 * 8 7 6 11 11 C 1.47854 * 126.92530 * 0.02562 * 10 8 7 12 12 C 1.56016 * 105.11378 * 181.91413 * 11 10 8 13 13 H 1.09002 * 116.25929 * 158.85369 * 12 11 10 14 14 C 1.57080 * 99.60080 * 32.80550 * 12 11 10 15 15 C 1.49281 * 126.92617 * 179.71147 * 10 8 7 16 16 H 1.08996 * 116.12531 * 16.02064 * 15 10 8 17 17 C 1.58436 * 103.73171 * 246.73282 * 15 10 8 18 18 N 1.48279 * 104.80059 * 288.57847 * 17 15 10 19 19 C 1.46906 * 111.00292 * 122.84869 * 18 17 15 20 20 C 1.50692 * 109.46971 * 78.75475 * 19 18 17 21 21 O 1.21289 * 120.00294 * 359.97438 * 20 19 18 22 22 N 1.34775 * 120.00036 * 180.02562 * 20 19 18 23 23 C 1.37095 * 120.00319 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00110 * 359.97438 * 23 22 20 25 25 C 1.38952 * 119.99835 * 179.97438 * 23 22 20 26 26 N 1.31406 * 120.00340 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99856 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.46983 * 90.00204 * 27 25 23 29 29 H 1.48498 * 109.47257 * 210.00612 * 27 25 23 30 30 H 1.48503 * 109.46885 * 330.00407 * 27 25 23 31 31 H 1.09000 * 109.46925 * 60.00400 * 1 2 3 32 32 H 1.09001 * 109.46630 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47228 * 299.99603 * 1 2 3 34 34 H 1.09000 * 109.47228 * 240.00397 * 2 1 3 35 35 H 1.08998 * 109.47203 * 120.00065 * 2 1 3 36 36 H 1.09005 * 109.46436 * 299.99881 * 5 3 2 37 37 H 1.08999 * 109.47056 * 180.02562 * 5 3 2 38 38 H 1.08995 * 109.47104 * 60.00046 * 5 3 2 39 39 H 1.09004 * 109.47173 * 305.00535 * 6 3 2 40 40 H 1.09004 * 109.47333 * 65.00019 * 6 3 2 41 41 H 1.08998 * 109.46898 * 300.00526 * 7 6 3 42 42 H 1.09005 * 109.47039 * 60.00192 * 7 6 3 43 43 H 1.09002 * 110.31815 * 300.82562 * 11 10 8 44 44 H 1.09005 * 110.31892 * 63.00319 * 11 10 8 45 45 H 1.09002 * 112.35692 * 64.33125 * 14 12 11 46 46 H 1.09000 * 112.36091 * 191.74585 * 14 12 11 47 47 H 1.09000 * 110.19654 * 169.89496 * 17 15 10 48 48 H 1.08999 * 110.79323 * 47.56195 * 17 15 10 49 49 H 1.09002 * 109.46576 * 198.75459 * 19 18 17 50 50 H 1.08999 * 109.46726 * 318.75324 * 19 18 17 51 51 H 0.97003 * 120.00251 * 359.97438 * 22 20 19 52 52 H 0.96999 * 120.00049 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1258 7 6 4.0644 2.8851 0.2512 8 6 5.5663 2.8870 0.3745 9 8 6.1770 1.8391 0.3636 10 7 6.2309 4.0530 0.4979 11 6 5.6451 5.4102 0.5306 12 6 6.8648 6.3772 0.6369 13 1 6.6930 7.4066 0.3220 14 6 7.9212 5.5583 -0.1883 15 6 7.7063 4.2342 0.6356 16 1 8.3223 3.3755 0.3687 17 6 7.8799 4.8028 2.1042 18 7 7.3579 6.1891 2.0378 19 6 6.2742 6.3906 3.0089 20 6 6.8613 6.5933 4.3819 21 8 8.0642 6.5715 4.5364 22 7 6.0499 6.7978 5.4384 23 6 6.5840 6.9817 6.6875 24 1 7.6550 6.9623 6.8252 25 6 5.7473 7.1931 7.7766 26 7 4.4441 7.2162 7.6093 27 14 6.4750 7.4429 9.4788 28 1 6.7224 8.8898 9.7039 29 1 5.5248 6.9381 10.5023 30 1 7.7562 6.6995 9.5834 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0699 1.5875 -2.1491 37 1 1.9989 3.1541 -1.3074 38 1 0.5489 2.1253 -1.3968 39 1 3.8570 0.8800 1.0114 40 1 4.0030 0.9837 -0.7596 41 1 3.7721 3.4494 -0.6343 42 1 3.6263 3.3458 1.1366 43 1 5.0874 5.6039 -0.3857 44 1 4.9968 5.5218 1.3997 45 1 7.6361 5.4498 -1.2348 46 1 8.9306 5.9546 -0.0787 47 1 8.9335 4.8079 2.3836 48 1 7.3026 4.2147 2.8176 49 1 5.6940 7.2697 2.7284 50 1 5.6258 5.5145 3.0167 51 1 5.0879 6.8149 5.3149 52 1 3.8601 7.3642 8.3695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665421478.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:41 Heat of formation + Delta-G solvation = -73.706821 kcal Electronic energy + Delta-G solvation = -30046.977269 eV Core-core repulsion = 26045.848984 eV Total energy + Delta-G solvation = -4001.128286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.22784 -40.22958 -39.55902 -37.95011 -36.01862 -34.98652 -33.44099 -33.21276 -31.98317 -30.74672 -29.60511 -28.18550 -26.89430 -26.21177 -25.60512 -23.72435 -22.10741 -21.58006 -21.07597 -20.75849 -20.01114 -19.42983 -18.32172 -18.05919 -17.31025 -16.98490 -16.55733 -16.52816 -16.09319 -15.91030 -15.71035 -15.30235 -15.00260 -14.93066 -14.49113 -14.33430 -14.00961 -13.89233 -13.65263 -13.59027 -13.49910 -13.37612 -13.09101 -12.94370 -12.80216 -12.69370 -12.59073 -12.50402 -12.42873 -12.34188 -12.17234 -12.11960 -12.08145 -11.88715 -11.50092 -11.49167 -11.41240 -11.31962 -10.93011 -10.37385 -10.00486 -9.80091 -9.15556 -8.46952 -5.95163 1.36686 1.40211 1.52547 1.55732 1.84431 2.06390 2.27074 2.66522 3.19068 3.25427 3.32136 3.50758 3.58122 3.68217 3.78077 3.92413 3.93993 4.10719 4.17630 4.23824 4.25619 4.31865 4.39035 4.49396 4.50127 4.53172 4.57757 4.63186 4.70666 4.71620 4.75164 4.83937 4.88728 4.92092 4.95312 5.03484 5.06354 5.09067 5.17440 5.18741 5.23530 5.25469 5.31930 5.40356 5.55593 5.57918 5.77119 5.85055 6.06678 6.48711 6.61171 7.08426 7.13635 7.57141 8.13959 8.70456 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009579 B = 0.002808 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.503828 B = 9970.519603 C =12097.702099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.089 4.089 4 H 0.072 0.928 5 C -0.148 4.148 6 C -0.094 4.094 7 C -0.128 4.128 8 C 0.521 3.479 9 O -0.590 6.590 10 N -0.622 5.622 11 C 0.059 3.941 12 C 0.058 3.942 13 H 0.166 0.834 14 C -0.113 4.113 15 C 0.105 3.895 16 H 0.119 0.881 17 C 0.045 3.955 18 N -0.509 5.509 19 C 0.054 3.946 20 C 0.439 3.561 21 O -0.618 6.618 22 N -0.576 5.576 23 C -0.332 4.332 24 H 0.075 0.925 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.990 3.010 28 H -0.269 1.269 29 H -0.270 1.270 30 H -0.276 1.276 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.122 0.878 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.110 0.890 46 H 0.097 0.903 47 H 0.069 0.931 48 H 0.026 0.974 49 H 0.121 0.879 50 H 0.063 0.937 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.859 -5.714 -22.100 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.107 4.107 4 H 0.091 0.909 5 C -0.205 4.205 6 C -0.132 4.132 7 C -0.167 4.167 8 C 0.312 3.688 9 O -0.471 6.471 10 N -0.356 5.356 11 C -0.064 4.064 12 C -0.049 4.049 13 H 0.183 0.817 14 C -0.151 4.151 15 C 0.001 3.999 16 H 0.137 0.863 17 C -0.085 4.085 18 N -0.233 5.233 19 C -0.078 4.078 20 C 0.226 3.774 21 O -0.503 6.503 22 N -0.214 5.214 23 C -0.461 4.461 24 H 0.093 0.907 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.813 3.187 28 H -0.194 1.194 29 H -0.195 1.195 30 H -0.201 1.201 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.140 0.860 42 H 0.119 0.881 43 H 0.130 0.870 44 H 0.095 0.905 45 H 0.129 0.871 46 H 0.116 0.884 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.139 0.861 50 H 0.081 0.919 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.569 -5.951 -21.724 23.762 hybrid contribution -0.524 -0.758 1.373 1.653 sum -8.092 -6.709 -20.351 22.906 Atomic orbital electron populations 1.21811 0.95012 1.01843 1.02220 1.21573 0.96585 0.96183 1.01620 1.21162 0.93472 0.96659 0.99451 0.90923 1.21932 1.01857 1.00655 0.96099 1.21337 0.95672 0.94515 1.01719 1.21752 0.88780 1.00410 1.05807 1.21130 0.91374 0.81566 0.74682 1.90676 1.71211 1.32257 1.52988 1.49442 1.07939 1.06576 1.71674 1.23516 0.97690 0.80841 1.04324 1.25048 0.92564 1.00442 0.86872 0.81665 1.23909 1.00531 0.91798 0.98888 1.24629 0.81919 0.98952 0.94430 0.86320 1.23895 1.00519 0.88242 0.95815 1.64456 1.30917 1.24280 1.03685 1.21938 0.93180 1.02967 0.89697 1.20927 0.87131 0.82171 0.87184 1.90490 1.16721 1.56853 1.86277 1.41922 1.09048 1.63900 1.06522 1.19609 0.93489 1.48068 0.84966 0.90666 1.25981 0.95524 0.96538 1.03112 1.69656 1.03038 1.49779 1.33598 0.84981 0.77847 0.78790 0.77045 1.19416 1.19512 1.20115 0.91711 0.92641 0.92839 0.92056 0.93005 0.92818 0.91668 0.91683 0.93663 0.92281 0.86034 0.88124 0.86990 0.90466 0.87123 0.88413 0.91274 0.95501 0.86101 0.91875 0.77045 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.67 71.98 0.70 -1.17 16 2 C -0.12 -1.80 5.40 30.59 0.17 -1.63 16 3 C -0.09 -1.29 2.39 -10.80 -0.03 -1.31 16 4 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 5 C -0.15 -1.65 8.70 71.98 0.63 -1.02 16 6 C -0.09 -1.80 3.97 30.59 0.12 -1.68 16 7 C -0.13 -2.24 4.74 29.85 0.14 -2.10 16 8 C 0.52 13.38 7.89 87.66 0.69 14.08 16 9 O -0.59 -20.38 16.32 -3.06 -0.05 -20.43 16 10 N -0.62 -14.04 2.95 -762.97 -2.25 -16.29 16 11 C 0.06 0.95 5.64 87.17 0.49 1.45 16 12 C 0.06 1.03 5.14 46.85 0.24 1.27 16 13 H 0.17 2.01 8.14 -2.39 -0.02 1.99 16 14 C -0.11 -1.91 6.85 33.59 0.23 -1.68 16 15 C 0.10 2.54 5.34 47.96 0.26 2.79 16 16 H 0.12 3.03 8.05 -2.39 -0.02 3.01 16 17 C 0.04 1.43 5.70 87.98 0.50 1.94 16 18 N -0.51 -15.26 4.81 -838.90 -4.04 -19.29 16 19 C 0.05 1.76 4.07 85.55 0.35 2.11 16 20 C 0.44 20.97 7.67 87.65 0.67 21.65 16 21 O -0.62 -34.88 15.58 -3.06 -0.05 -34.93 16 22 N -0.58 -29.65 5.29 -306.99 -1.62 -31.28 16 23 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 24 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 25 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 26 N -0.92 -49.55 13.05 21.66 0.28 -49.27 16 27 Si 0.99 43.39 29.55 68.60 2.03 45.42 16 28 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 29 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 30 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 31 H 0.06 0.69 6.57 -2.39 -0.02 0.67 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.06 0.60 6.56 -2.39 -0.02 0.58 16 38 H 0.06 0.63 6.56 -2.39 -0.02 0.62 16 39 H 0.04 1.07 8.10 -2.38 -0.02 1.06 16 40 H 0.06 1.24 8.10 -2.38 -0.02 1.22 16 41 H 0.12 1.42 6.56 -2.39 -0.02 1.41 16 42 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.08 1.34 5.55 -2.38 -0.01 1.33 16 45 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.10 1.70 8.14 -2.39 -0.02 1.69 16 47 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 48 H 0.03 1.02 7.40 -2.39 -0.02 1.00 16 49 H 0.12 3.20 8.00 -2.39 -0.02 3.18 16 50 H 0.06 1.96 6.17 -2.39 -0.01 1.95 16 51 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 52 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -76.49 405.92 0.92 -75.57 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: 0.18 Total: 34.22 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 6.44 Total: 16.28 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -7.62 Total: -116.13 kcal Atomic # 8 Polarization: -55.26 SS G_CDS: -0.10 Total: -55.36 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -76.49 0.92 -75.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665421478.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.861 kcal (2) G-P(sol) polarization free energy of solvation -76.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds