Wall clock time and date at job start Tue Mar 31 2020 20:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47173 * 2 1 4 4 H 1.09000 * 109.47239 * 304.99799 * 3 2 1 5 5 C 1.52996 * 109.47316 * 65.00064 * 3 2 1 6 6 C 1.53007 * 109.47270 * 185.00140 * 3 2 1 7 7 C 1.52998 * 109.47351 * 175.00059 * 6 3 2 8 8 C 1.50694 * 109.47302 * 180.02562 * 7 6 3 9 9 O 1.21292 * 119.99676 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00217 * 179.97438 * 8 7 6 11 11 C 1.47863 * 126.92720 * 0.02959 * 10 8 7 12 12 C 1.56028 * 105.11285 * 181.91301 * 11 10 8 13 13 H 1.08998 * 116.25634 * 159.70252 * 12 11 10 14 14 C 1.57085 * 100.41124 * 33.04767 * 12 11 10 15 15 C 1.49281 * 126.92640 * 179.97438 * 10 8 7 16 16 H 1.08999 * 116.12476 * 16.02484 * 15 10 8 17 17 C 1.55968 * 104.87294 * 246.63696 * 15 10 8 18 18 N 1.48278 * 105.09317 * 289.93827 * 17 15 10 19 19 C 1.46902 * 110.99902 * 121.26663 * 18 17 15 20 20 C 1.50695 * 109.47496 * 184.13229 * 19 18 17 21 21 O 1.21296 * 119.99790 * 359.97438 * 20 19 18 22 22 N 1.34782 * 120.00372 * 179.72459 * 20 19 18 23 23 C 1.37099 * 119.99777 * 180.27296 * 22 20 19 24 24 H 1.07997 * 120.00384 * 0.02562 * 23 22 20 25 25 C 1.38952 * 119.99368 * 180.02562 * 23 22 20 26 26 N 1.31405 * 120.00280 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99659 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47422 * 59.99727 * 27 25 23 29 29 H 1.48502 * 109.47004 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.47178 * 299.99842 * 27 25 23 31 31 H 1.09000 * 109.47230 * 299.99868 * 1 2 3 32 32 H 1.08995 * 109.47099 * 59.99580 * 1 2 3 33 33 H 1.08998 * 109.47386 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46936 * 239.99717 * 2 1 3 35 35 H 1.09003 * 109.46931 * 120.00186 * 2 1 3 36 36 H 1.08996 * 109.47297 * 300.00029 * 5 3 2 37 37 H 1.09000 * 109.47183 * 59.99700 * 5 3 2 38 38 H 1.08998 * 109.47220 * 179.97438 * 5 3 2 39 39 H 1.08998 * 109.46957 * 54.99534 * 6 3 2 40 40 H 1.09001 * 109.47001 * 295.00024 * 6 3 2 41 41 H 1.08994 * 109.47053 * 59.99735 * 7 6 3 42 42 H 1.09001 * 109.47039 * 299.99941 * 7 6 3 43 43 H 1.08998 * 110.31707 * 63.00247 * 11 10 8 44 44 H 1.09003 * 110.31108 * 300.81904 * 11 10 8 45 45 H 1.09000 * 112.35741 * 64.12493 * 14 12 11 46 46 H 1.08999 * 112.35636 * 191.54476 * 14 12 11 47 47 H 1.09001 * 111.38755 * 170.46573 * 17 15 10 48 48 H 1.08998 * 109.22476 * 48.30357 * 17 15 10 49 49 H 1.09003 * 109.47381 * 64.12923 * 19 18 17 50 50 H 1.09000 * 109.47159 * 304.13121 * 19 18 17 51 51 H 0.96997 * 119.99299 * 0.27392 * 22 20 19 52 52 H 0.96995 * 120.00110 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4443 -0.1258 7 6 4.0646 2.8849 -0.2511 8 6 5.5663 2.8867 -0.3756 9 8 6.1770 1.8388 -0.3646 10 7 6.2309 4.0526 -0.4992 11 6 5.6454 5.4100 -0.5298 12 6 6.8568 6.3711 -0.7375 13 1 6.6245 7.3632 -1.1244 14 6 7.7846 5.4699 -1.6290 15 6 7.7067 4.2340 -0.6316 16 1 8.2777 3.3445 -0.8977 17 6 8.1406 4.9562 0.6810 18 7 7.5851 6.3265 0.5695 19 6 6.6784 6.6195 1.6875 20 6 6.0566 7.9776 1.4875 21 8 6.3412 8.6368 0.5098 22 7 5.1804 8.4576 2.3922 23 6 4.6106 9.6907 2.2071 24 1 4.8634 10.2773 1.3363 25 6 3.7077 10.1858 3.1402 26 7 3.3997 9.4718 4.1995 27 14 2.9307 11.8656 2.8878 28 1 2.1691 11.8723 1.6130 29 1 2.0100 12.1596 4.0153 30 1 3.9946 12.9002 2.8342 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 0.5490 2.1252 1.3969 37 1 2.0698 1.5874 2.1491 38 1 1.9990 3.1540 1.3075 39 1 3.8570 0.8799 -1.0113 40 1 4.0030 0.9835 0.7596 41 1 3.7723 3.4492 0.6344 42 1 3.6264 3.3457 -1.1365 43 1 5.1466 5.6284 0.4144 44 1 4.9438 5.5008 -1.3592 45 1 7.3371 5.2440 -2.5969 46 1 8.7893 5.8804 -1.7289 47 1 9.2260 4.9941 0.7737 48 1 7.7047 4.4394 1.5359 49 1 7.2393 6.6109 2.6222 50 1 5.8944 5.8633 1.7273 51 1 4.9532 7.9305 3.1741 52 1 2.7697 9.8176 4.8510 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665421479.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:43 Heat of formation + Delta-G solvation = -66.705773 kcal Electronic energy + Delta-G solvation = -30464.158888 eV Core-core repulsion = 26463.334190 eV Total energy + Delta-G solvation = -4000.824697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.34173 -40.29350 -39.48447 -37.96652 -36.00278 -34.96647 -33.44188 -33.21435 -32.02638 -30.81309 -29.65305 -28.12893 -26.93283 -26.19767 -25.61806 -23.69958 -22.05634 -21.75388 -20.96797 -20.78184 -19.95577 -19.47733 -18.37559 -17.77678 -17.67827 -16.99114 -16.57149 -16.34917 -16.29752 -15.89707 -15.62683 -15.26588 -15.12810 -14.95296 -14.41880 -14.31408 -14.11159 -14.01535 -13.80099 -13.49074 -13.47444 -13.16532 -12.98391 -12.95661 -12.82171 -12.71836 -12.59915 -12.54349 -12.45280 -12.40202 -12.21518 -12.11405 -12.02331 -11.89001 -11.52017 -11.44404 -11.42595 -11.33914 -10.94370 -10.20388 -9.98561 -9.82744 -9.21991 -8.44190 -5.92422 1.41120 1.44045 1.51560 1.54061 1.78279 2.05601 2.29418 2.72146 3.21065 3.24948 3.28467 3.44050 3.57896 3.76370 3.77402 3.90146 3.95186 4.02045 4.09599 4.21861 4.30170 4.34578 4.39580 4.40701 4.50860 4.52422 4.55802 4.62155 4.69025 4.71235 4.73116 4.77751 4.86023 4.90077 4.97097 5.02682 5.06970 5.14695 5.15369 5.17163 5.21529 5.24159 5.30427 5.43776 5.53224 5.55056 5.76895 5.84731 6.07209 6.42399 6.61595 7.03638 7.14860 7.57574 8.12078 8.72861 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008404 B = 0.003362 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.125848 B = 8325.812475 C =11033.899454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.088 4.088 4 H 0.076 0.924 5 C -0.153 4.153 6 C -0.090 4.090 7 C -0.135 4.135 8 C 0.528 3.472 9 O -0.579 6.579 10 N -0.618 5.618 11 C 0.065 3.935 12 C 0.060 3.940 13 H 0.127 0.873 14 C -0.119 4.119 15 C 0.107 3.893 16 H 0.134 0.866 17 C 0.030 3.970 18 N -0.507 5.507 19 C 0.043 3.957 20 C 0.447 3.553 21 O -0.608 6.608 22 N -0.572 5.572 23 C -0.328 4.328 24 H 0.083 0.917 25 C -0.012 4.012 26 N -0.921 5.921 27 Si 0.990 3.010 28 H -0.270 1.270 29 H -0.274 1.274 30 H -0.273 1.273 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.052 0.948 49 H 0.101 0.899 50 H 0.067 0.933 51 H 0.394 0.606 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 -16.159 -8.105 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.106 4.106 4 H 0.095 0.905 5 C -0.210 4.210 6 C -0.128 4.128 7 C -0.174 4.174 8 C 0.320 3.680 9 O -0.459 6.459 10 N -0.352 5.352 11 C -0.059 4.059 12 C -0.048 4.048 13 H 0.145 0.855 14 C -0.157 4.157 15 C 0.004 3.996 16 H 0.151 0.849 17 C -0.099 4.099 18 N -0.232 5.232 19 C -0.089 4.089 20 C 0.234 3.766 21 O -0.494 6.494 22 N -0.210 5.210 23 C -0.458 4.458 24 H 0.101 0.899 25 C -0.212 4.212 26 N -0.562 5.562 27 Si 0.814 3.186 28 H -0.195 1.195 29 H -0.199 1.199 30 H -0.199 1.199 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.125 0.875 47 H 0.128 0.872 48 H 0.071 0.929 49 H 0.119 0.881 50 H 0.084 0.916 51 H 0.227 0.773 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.186 -15.925 -8.515 18.060 hybrid contribution -1.189 0.186 0.821 1.457 sum -1.376 -15.739 -7.694 17.573 Atomic orbital electron populations 1.21817 0.95213 1.01912 1.02069 1.21548 0.96406 0.95683 1.01969 1.21163 0.93860 0.96905 0.98711 0.90547 1.21960 1.01823 1.00244 0.97001 1.21318 0.95321 0.93916 1.02230 1.21770 0.89705 1.00736 1.05219 1.20893 0.90983 0.81481 0.74688 1.90664 1.70954 1.31600 1.52715 1.49372 1.08339 1.05677 1.71835 1.23273 0.98295 0.81647 1.02667 1.24746 0.91246 0.98391 0.90387 0.85497 1.24250 1.01381 0.92990 0.97061 1.24406 0.80898 0.98466 0.95857 0.84871 1.23773 1.01877 0.87145 0.97089 1.64742 1.31839 1.25403 1.01175 1.22069 0.96342 0.93860 0.96603 1.20450 0.82352 0.89351 0.84459 1.90449 1.65219 1.61835 1.31876 1.41923 1.38816 1.17635 1.22579 1.19617 1.22650 0.95074 1.08418 0.89914 1.25994 0.97422 1.02986 0.94778 1.69664 1.35221 1.39618 1.11707 0.85033 0.78045 0.77542 0.78023 1.19468 1.19891 1.19858 0.92470 0.92549 0.92324 0.91908 0.92293 0.91734 0.92993 0.92971 0.91963 0.92638 0.88448 0.87523 0.91333 0.89598 0.88894 0.87463 0.87228 0.92923 0.88129 0.91555 0.77276 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.67 71.98 0.70 -1.34 16 2 C -0.12 -1.79 5.40 30.59 0.17 -1.63 16 3 C -0.09 -1.46 2.39 -10.79 -0.03 -1.48 16 4 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 5 C -0.15 -2.65 8.70 71.98 0.63 -2.02 16 6 C -0.09 -1.80 3.97 30.60 0.12 -1.68 16 7 C -0.13 -2.82 4.74 29.85 0.14 -2.68 16 8 C 0.53 14.03 7.89 87.66 0.69 14.72 16 9 O -0.58 -18.86 16.32 -3.07 -0.05 -18.91 16 10 N -0.62 -15.40 2.98 -764.60 -2.28 -17.68 16 11 C 0.06 1.69 5.61 87.17 0.49 2.18 16 12 C 0.06 1.73 4.11 46.86 0.19 1.92 16 13 H 0.13 4.44 6.37 -2.39 -0.02 4.42 16 14 C -0.12 -2.54 6.94 34.19 0.24 -2.31 16 15 C 0.11 2.42 5.26 47.64 0.25 2.67 16 16 H 0.13 2.84 8.05 -2.39 -0.02 2.82 16 17 C 0.03 0.71 6.30 87.07 0.55 1.26 16 18 N -0.51 -15.41 5.16 -844.32 -4.36 -19.77 16 19 C 0.04 1.43 4.65 85.55 0.40 1.83 16 20 C 0.45 19.87 7.37 87.65 0.65 20.51 16 21 O -0.61 -30.61 13.57 -3.08 -0.04 -30.65 16 22 N -0.57 -27.99 5.29 -306.98 -1.62 -29.61 16 23 C -0.33 -17.77 9.68 84.04 0.81 -16.96 16 24 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 25 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 26 N -0.92 -48.48 13.05 21.66 0.28 -48.20 16 27 Si 0.99 41.59 29.55 68.60 2.03 43.62 16 28 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 29 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 30 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 31 H 0.06 0.76 6.57 -2.39 -0.02 0.75 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 1.02 6.56 -2.39 -0.02 1.00 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 0.96 6.56 -2.39 -0.02 0.94 16 39 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 40 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 41 H 0.10 2.01 6.56 -2.39 -0.02 2.00 16 42 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.07 2.00 5.16 -2.39 -0.01 1.99 16 44 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.05 1.34 7.61 -2.39 -0.02 1.32 16 49 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 50 H 0.07 2.08 5.65 -2.39 -0.01 2.07 16 51 H 0.39 18.62 7.90 -92.71 -0.73 17.88 16 52 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -64.50 401.80 0.60 -63.90 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: 0.18 Total: 42.45 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 6.46 Total: 14.85 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -7.98 Total: -115.27 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.09 Total: -49.56 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -64.50 0.60 -63.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665421479.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.807 kcal (2) G-P(sol) polarization free energy of solvation -64.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds