Wall clock time and date at job start Tue Mar 31 2020 20:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47068 * 2 1 4 4 H 1.08999 * 109.46888 * 55.00203 * 3 2 1 5 5 C 1.53003 * 109.47014 * 174.99449 * 3 2 1 6 6 N 1.46499 * 109.46708 * 174.99880 * 5 3 2 7 7 C 1.34784 * 119.99893 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99649 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99774 * 179.72962 * 7 6 5 10 10 H 1.08999 * 109.49628 * 299.99462 * 9 7 6 11 11 C 1.53033 * 109.50197 * 60.06270 * 9 7 6 12 12 C 1.53040 * 109.54164 * 181.31487 * 11 9 7 13 13 C 1.53194 * 109.31227 * 298.63867 * 12 11 9 14 14 N 1.46924 * 108.77813 * 54.63072 * 13 12 11 15 15 C 1.34777 * 120.63452 * 126.43556 * 14 13 12 16 16 O 1.21275 * 120.00321 * 180.02562 * 15 14 13 17 17 C 1.50706 * 119.99338 * 0.02562 * 15 14 13 18 18 C 1.53004 * 117.49619 * 248.74436 * 17 15 14 19 19 C 1.53003 * 117.49372 * 180.08823 * 17 15 14 20 20 C 1.46938 * 118.76340 * 306.41374 * 14 13 12 21 21 N 1.46491 * 109.46969 * 295.00053 * 3 2 1 22 22 C 1.36933 * 120.00454 * 85.00177 * 21 3 2 23 23 H 1.07995 * 119.99809 * 359.97438 * 22 21 3 24 24 C 1.38811 * 120.00487 * 179.97438 * 22 21 3 25 25 N 1.31621 * 119.99700 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00344 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47158 * 59.99871 * 26 24 22 28 28 H 1.48500 * 109.47444 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.47237 * 299.99818 * 26 24 22 30 30 H 1.08993 * 109.47224 * 300.00114 * 1 2 3 31 31 H 1.08996 * 109.46802 * 60.00454 * 1 2 3 32 32 H 1.09005 * 109.46534 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47735 * 239.99952 * 2 1 3 34 34 H 1.09005 * 109.47269 * 119.99882 * 2 1 3 35 35 H 1.08998 * 109.46692 * 55.00382 * 5 3 2 36 36 H 1.08994 * 109.47584 * 295.00246 * 5 3 2 37 37 H 0.97005 * 120.00261 * 0.02562 * 6 5 3 38 38 H 1.08997 * 109.45872 * 301.33688 * 11 9 7 39 39 H 1.08999 * 109.46264 * 61.30784 * 11 9 7 40 40 H 1.09004 * 109.49582 * 58.58102 * 12 11 9 41 41 H 1.08995 * 109.50025 * 178.65162 * 12 11 9 42 42 H 1.09003 * 109.59000 * 174.42198 * 13 12 11 43 43 H 1.09001 * 109.58712 * 294.84411 * 13 12 11 44 44 H 1.08996 * 115.55220 * 34.42118 * 17 15 14 45 45 H 1.08998 * 117.49930 * 0.02562 * 18 17 15 46 46 H 1.08998 * 117.49613 * 145.02526 * 18 17 15 47 47 H 1.09001 * 117.49952 * 214.98220 * 19 17 15 48 48 H 1.09003 * 117.49897 * 359.97438 * 19 17 15 49 49 H 1.09002 * 109.56148 * 293.78427 * 20 14 13 50 50 H 1.09006 * 109.61277 * 173.35593 * 20 14 13 51 51 H 0.97006 * 119.99804 * 264.99213 * 21 3 2 52 52 H 0.97005 * 120.00067 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1259 6 7 4.0630 2.8168 0.0061 7 6 5.3857 3.0630 0.0860 8 8 6.1635 2.1482 0.2567 9 6 5.8986 4.4741 -0.0433 10 1 5.6145 4.8768 -1.0155 11 6 5.2953 5.3405 1.0645 12 6 5.7899 6.7810 0.9144 13 6 7.3152 6.8101 1.0543 14 7 7.8968 5.8686 0.0879 15 6 8.8456 6.2733 -0.7796 16 8 9.3175 5.4866 -1.5727 17 6 9.3200 7.7037 -0.7638 18 6 8.9562 8.5818 -1.9627 19 6 10.3975 8.1017 -1.7746 20 6 7.4252 4.4770 0.0849 21 7 1.6524 2.0974 -1.2517 22 6 0.4156 2.6734 -1.3688 23 1 -0.2742 2.6445 -0.5384 24 6 0.0486 3.2945 -2.5547 25 7 0.8892 3.3292 -3.5669 26 14 -1.6388 4.0796 -2.7146 27 1 -1.7882 5.1447 -1.6907 28 1 -1.7835 4.6706 -4.0692 29 1 -2.6866 3.0470 -2.5113 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.9954 0.8311 -0.6658 36 1 3.8498 1.0377 1.0961 37 1 3.4409 3.5484 -0.1308 38 1 4.2081 5.3203 0.9899 39 1 5.5999 4.9517 2.0362 40 1 5.5073 7.1623 -0.0669 41 1 5.3411 7.4024 1.6893 42 1 7.6818 7.8162 0.8502 43 1 7.5951 6.5152 2.0656 44 1 9.3502 8.1782 0.2170 45 1 8.3734 8.1252 -2.7626 46 1 8.7473 9.6342 -1.7707 47 1 11.1362 8.8384 -1.4589 48 1 10.7634 7.3289 -2.4506 49 1 7.7145 3.9916 1.0170 50 1 7.8637 3.9438 -0.7587 51 1 2.2720 2.1232 -1.9977 52 1 0.6329 3.7635 -4.3956 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665792232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:35 Heat of formation + Delta-G solvation = -69.788035 kcal Electronic energy + Delta-G solvation = -30061.355106 eV Core-core repulsion = 26060.396751 eV Total energy + Delta-G solvation = -4000.958354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.70906 -40.72849 -38.67545 -38.07443 -37.01266 -35.30860 -34.33729 -33.84912 -32.33295 -31.49397 -29.52673 -27.23628 -26.03837 -25.29609 -24.25917 -23.53113 -23.31772 -22.26601 -21.60288 -20.81657 -19.77620 -19.23846 -18.76540 -17.88650 -17.22515 -16.92266 -16.85989 -16.36387 -16.27965 -15.88035 -15.58431 -15.37746 -15.24393 -15.02339 -14.72252 -14.55736 -14.50079 -14.07292 -14.04117 -13.76101 -13.60420 -13.45639 -12.97551 -12.78765 -12.73542 -12.58782 -12.45146 -12.36836 -12.14184 -12.13376 -12.00077 -11.87436 -11.69980 -11.62581 -11.51682 -11.39118 -11.33142 -10.98309 -10.89550 -10.71739 -10.03550 -9.74629 -8.97630 -7.86745 -5.14281 1.39887 1.50976 1.52538 1.57836 1.58256 1.77881 2.35454 2.60593 2.90857 3.39786 3.46801 3.57398 3.74084 3.77568 3.84015 3.90177 3.96108 3.97093 4.04395 4.08983 4.18984 4.22858 4.38112 4.48028 4.50544 4.56039 4.60347 4.71201 4.74652 4.75716 4.77467 4.86354 4.87480 4.91841 5.03172 5.06745 5.09364 5.10243 5.13645 5.20982 5.22895 5.34423 5.43651 5.47359 5.57249 5.61746 5.72098 6.32576 6.34212 6.56147 7.08451 7.20864 7.40546 8.12352 8.37231 9.35896 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.002737 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.633633 B =10229.184394 C =11479.432544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.166 3.834 4 H 0.063 0.937 5 C 0.121 3.879 6 N -0.705 5.705 7 C 0.517 3.483 8 O -0.587 6.587 9 C -0.112 4.112 10 H 0.091 0.909 11 C -0.107 4.107 12 C -0.128 4.128 13 C 0.099 3.901 14 N -0.606 5.606 15 C 0.531 3.469 16 O -0.595 6.595 17 C -0.195 4.195 18 C -0.142 4.142 19 C -0.154 4.154 20 C 0.140 3.860 21 N -0.728 5.728 22 C -0.215 4.215 23 H 0.082 0.918 24 C -0.073 4.073 25 N -0.969 5.969 26 Si 0.960 3.040 27 H -0.275 1.275 28 H -0.306 1.306 29 H -0.284 1.284 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.411 0.589 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.162 0.838 45 H 0.077 0.923 46 H 0.139 0.861 47 H 0.133 0.867 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.059 0.941 51 H 0.371 0.629 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.521 12.636 14.211 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.081 0.919 5 C -0.003 4.003 6 N -0.356 5.356 7 C 0.303 3.697 8 O -0.468 6.468 9 C -0.134 4.134 10 H 0.109 0.891 11 C -0.145 4.145 12 C -0.166 4.166 13 C -0.022 4.022 14 N -0.337 5.337 15 C 0.321 3.679 16 O -0.476 6.476 17 C -0.215 4.215 18 C -0.179 4.179 19 C -0.192 4.192 20 C 0.016 3.984 21 N -0.368 5.368 22 C -0.347 4.347 23 H 0.099 0.901 24 C -0.266 4.266 25 N -0.620 5.620 26 Si 0.791 3.209 27 H -0.201 1.201 28 H -0.233 1.233 29 H -0.211 1.211 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.248 0.752 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.107 0.893 44 H 0.179 0.821 45 H 0.096 0.904 46 H 0.157 0.843 47 H 0.151 0.849 48 H 0.096 0.904 49 H 0.095 0.905 50 H 0.078 0.922 51 H 0.202 0.798 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.102 11.636 13.999 22.428 hybrid contribution -1.135 -0.066 -1.298 1.725 sum 11.967 11.570 12.701 20.938 Atomic orbital electron populations 1.21693 0.95857 1.00571 1.01866 1.22001 0.96723 0.97484 1.00927 1.20707 0.90748 0.93223 0.89587 0.91917 1.21577 0.94502 0.82927 1.01327 1.45953 1.07154 1.10567 1.71919 1.20798 0.82225 0.91236 0.75394 1.90659 1.56757 1.47740 1.51624 1.21572 0.96474 0.92398 1.02955 0.89092 1.21554 1.00951 0.95290 0.96741 1.21930 0.95001 0.95584 1.04091 1.22193 0.93527 0.94046 0.92391 1.48163 1.38776 1.10762 1.36000 1.20548 0.78326 0.90148 0.78882 1.90681 1.58792 1.57101 1.41073 1.22301 1.08175 0.91586 0.99455 1.23045 0.98122 1.00354 0.96390 1.23042 0.92721 1.03105 1.00285 1.21062 0.91812 0.82752 1.02732 1.42586 1.15814 1.66102 1.12326 1.19459 0.92445 1.25273 0.97513 0.90058 1.25387 1.00961 1.03576 0.96633 1.69815 1.36939 1.50975 1.04322 0.85410 0.80969 0.78548 0.76022 1.20132 1.23262 1.21056 0.92935 0.93340 0.92981 0.93931 0.90640 0.93671 0.90052 0.75208 0.90430 0.90191 0.91737 0.86885 0.86442 0.89275 0.82076 0.90393 0.84334 0.84920 0.90357 0.90474 0.92205 0.79759 0.94534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 9.18 71.98 0.66 -4.08 16 2 C -0.13 -4.23 5.61 30.59 0.17 -4.06 16 3 C 0.17 5.79 2.59 44.99 0.12 5.90 16 4 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 5 C 0.12 3.98 5.23 86.38 0.45 4.44 16 6 N -0.71 -22.64 5.28 -463.06 -2.44 -25.08 16 7 C 0.52 16.92 7.16 87.65 0.63 17.55 16 8 O -0.59 -23.13 15.93 -3.04 -0.05 -23.18 16 9 C -0.11 -2.93 2.68 -11.46 -0.03 -2.96 16 10 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 11 C -0.11 -1.95 5.08 30.62 0.16 -1.79 16 12 C -0.13 -1.60 6.08 30.67 0.19 -1.41 16 13 C 0.10 1.17 6.30 86.36 0.54 1.72 16 14 N -0.61 -13.22 2.97 -818.85 -2.43 -15.66 16 15 C 0.53 13.53 7.48 87.66 0.66 14.18 16 16 O -0.60 -21.53 15.67 -3.01 -0.05 -21.58 16 17 C -0.19 -2.98 4.96 -11.54 -0.06 -3.03 16 18 C -0.14 -1.91 10.24 30.62 0.31 -1.60 16 19 C -0.15 -2.33 10.05 30.62 0.31 -2.02 16 20 C 0.14 3.89 5.06 86.36 0.44 4.33 16 21 N -0.73 -32.53 4.51 -322.96 -1.46 -33.99 16 22 C -0.22 -10.59 7.75 84.03 0.65 -9.94 16 23 H 0.08 3.81 7.32 -2.91 -0.02 3.79 16 24 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 25 N -0.97 -56.67 13.06 21.65 0.28 -56.38 16 26 Si 0.96 43.74 29.55 68.60 2.03 45.76 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 28 H -0.31 -14.51 7.11 99.48 0.71 -13.80 16 29 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.97 5.99 -2.39 -0.01 1.95 16 32 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.41 13.18 7.54 -92.70 -0.70 12.48 16 38 H 0.08 1.44 7.53 -2.39 -0.02 1.42 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.12 0.75 5.68 -2.39 -0.01 0.73 16 43 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.16 1.23 6.82 -2.39 -0.02 1.22 16 45 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.08 1.67 7.67 -2.39 -0.02 1.65 16 49 H 0.08 2.11 7.96 -2.39 -0.02 2.09 16 50 H 0.06 2.13 7.01 -2.38 -0.02 2.11 16 51 H 0.37 18.77 7.80 -92.70 -0.72 18.05 16 52 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 Total: -1.00 -72.77 410.91 1.04 -71.73 By element: Atomic # 1 Polarization: 45.11 SS G_CDS: -0.50 Total: 44.61 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 5.66 Total: 13.76 kcal Atomic # 7 Polarization: -125.06 SS G_CDS: -6.05 Total: -131.11 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -0.10 Total: -44.76 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -72.77 1.04 -71.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665792232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.943 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds