Wall clock time and date at job start Tue Mar 31 2020 20:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47260 * 2 1 4 4 H 1.09005 * 109.46854 * 55.00245 * 3 2 1 5 5 C 1.52994 * 109.47483 * 175.00125 * 3 2 1 6 6 N 1.46492 * 109.47266 * 175.00132 * 5 3 2 7 7 C 1.34776 * 120.00086 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00274 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00181 * 180.02562 * 7 6 5 10 10 H 1.09000 * 109.49910 * 60.06007 * 9 7 6 11 11 C 1.53038 * 109.49914 * 299.99782 * 9 7 6 12 12 C 1.53035 * 109.54175 * 178.68279 * 11 9 7 13 13 C 1.53191 * 109.31327 * 61.36680 * 12 11 9 14 14 N 1.46926 * 108.89109 * 305.29292 * 13 12 11 15 15 C 1.34778 * 120.63336 * 233.68039 * 14 13 12 16 16 O 1.21273 * 120.00022 * 180.02562 * 15 14 13 17 17 C 1.50706 * 119.99581 * 0.02562 * 15 14 13 18 18 C 1.53001 * 117.49617 * 248.74453 * 17 15 14 19 19 C 1.52998 * 117.49369 * 180.08940 * 17 15 14 20 20 C 1.47207 * 118.55531 * 53.54119 * 14 13 12 21 21 N 1.46500 * 109.47118 * 295.00292 * 3 2 1 22 22 C 1.36942 * 119.99789 * 84.99364 * 21 3 2 23 23 H 1.07995 * 120.00206 * 0.02562 * 22 21 3 24 24 C 1.38815 * 119.99782 * 180.02562 * 22 21 3 25 25 N 1.31625 * 119.99943 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 119.99932 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.47134 * 90.00117 * 26 24 22 28 28 H 1.48500 * 109.47331 * 209.99920 * 26 24 22 29 29 H 1.48502 * 109.47264 * 329.99860 * 26 24 22 30 30 H 1.09003 * 109.47194 * 59.99973 * 1 2 3 31 31 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46970 * 299.99582 * 1 2 3 33 33 H 1.09005 * 109.47005 * 240.00399 * 2 1 3 34 34 H 1.09000 * 109.47465 * 120.00479 * 2 1 3 35 35 H 1.09002 * 109.46809 * 54.99832 * 5 3 2 36 36 H 1.09005 * 109.47129 * 295.00496 * 5 3 2 37 37 H 0.96999 * 120.00102 * 359.97438 * 6 5 3 38 38 H 1.09003 * 109.46001 * 58.65612 * 11 9 7 39 39 H 1.09004 * 109.46331 * 298.70671 * 11 9 7 40 40 H 1.09003 * 109.49576 * 301.41349 * 12 11 9 41 41 H 1.09000 * 109.52700 * 181.33397 * 12 11 9 42 42 H 1.09002 * 109.58786 * 65.15336 * 13 12 11 43 43 H 1.08996 * 109.58870 * 185.43616 * 13 12 11 44 44 H 1.08999 * 115.55287 * 34.41336 * 17 15 14 45 45 H 1.09008 * 117.49649 * 0.02562 * 18 17 15 46 46 H 1.08997 * 117.49980 * 145.02365 * 18 17 15 47 47 H 1.09001 * 117.49584 * 214.98027 * 19 17 15 48 48 H 1.09002 * 117.50282 * 359.97039 * 19 17 15 49 49 H 1.08996 * 109.53610 * 186.67231 * 20 14 13 50 50 H 1.08997 * 109.56315 * 66.29677 * 20 14 13 51 51 H 0.96991 * 120.00104 * 265.00071 * 21 3 2 52 52 H 0.96998 * 119.99921 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4444 0.1257 6 7 4.0630 2.8168 0.0059 7 6 5.3857 3.0630 0.0858 8 8 6.1635 2.1484 0.2572 9 6 5.8981 4.4749 -0.0368 10 1 5.4690 5.0878 0.7559 11 6 5.4976 5.0473 -1.3984 12 6 5.9891 6.4921 -1.5110 13 6 7.5172 6.5170 -1.4067 14 7 7.9205 5.8403 -0.1665 15 6 8.7242 6.4572 0.7224 16 8 9.0503 5.8876 1.7422 17 6 9.2175 7.8547 0.4489 18 6 10.7091 8.0330 0.1581 19 6 10.1284 8.4996 1.4954 20 6 7.4253 4.4769 0.0842 21 7 1.6524 2.0975 -1.2518 22 6 0.4155 2.6735 -1.3687 23 1 -0.2740 2.6452 -0.5380 24 6 0.0480 3.2936 -2.5550 25 7 0.8883 3.3277 -3.5676 26 14 -1.6389 4.0798 -2.7143 27 1 -1.5660 5.4995 -2.2844 28 1 -2.0843 4.0135 -4.1293 29 1 -2.6074 3.3517 -1.8558 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.9953 0.8312 -0.6660 36 1 3.8499 1.0377 1.0960 37 1 3.4410 3.5483 -0.1315 38 1 4.4123 5.0241 -1.4971 39 1 5.9467 4.4482 -2.1906 40 1 5.5596 7.0864 -0.7043 41 1 5.6832 6.9073 -2.4713 42 1 7.9504 5.9997 -2.2628 43 1 7.8656 7.5497 -1.3893 44 1 8.5204 8.5042 -0.0805 45 1 11.3334 7.1395 0.1643 46 1 10.9932 8.8001 -0.5622 47 1 10.0308 9.5735 1.6543 48 1 10.3705 7.9134 2.3819 49 1 7.7127 4.1635 1.0878 50 1 7.8509 3.7932 -0.6502 51 1 2.2718 2.1232 -1.9977 52 1 0.6314 3.7607 -4.3966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665792233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:39 Heat of formation + Delta-G solvation = -49.468788 kcal Electronic energy + Delta-G solvation = -30051.879120 eV Core-core repulsion = 26051.801874 eV Total energy + Delta-G solvation = -4000.077246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.68612 -39.52964 -37.59755 -36.64737 -36.21290 -33.82174 -33.04813 -32.34823 -31.40766 -29.78221 -28.01861 -26.26329 -24.89759 -23.77370 -23.12142 -22.73600 -22.34086 -21.22727 -20.15792 -19.47862 -18.98541 -17.89437 -17.36851 -16.68370 -16.10105 -15.81898 -15.41808 -15.36170 -14.80081 -14.77295 -14.44745 -14.24316 -14.09633 -13.72213 -13.54325 -13.21949 -13.06687 -12.98361 -12.85304 -12.61485 -12.49810 -12.12567 -11.88995 -11.62676 -11.45049 -11.31377 -11.06047 -11.01134 -10.91853 -10.86949 -10.79810 -10.76701 -10.68654 -10.46467 -10.22364 -10.05647 -9.95351 -9.58839 -9.49002 -9.00295 -8.80218 -8.63525 -7.08095 -5.86622 -3.15504 2.29713 2.69709 2.89730 3.35034 3.42183 3.43055 3.52080 3.62591 4.18465 4.40411 4.49671 4.55497 4.56727 4.70600 4.73354 4.81556 4.84265 5.06362 5.24335 5.25970 5.27609 5.38462 5.40140 5.42403 5.49306 5.53413 5.60653 5.63034 5.73347 5.77577 5.81308 5.89523 5.91942 5.94128 5.95430 6.08375 6.14277 6.21269 6.31971 6.40378 6.52645 6.55523 6.58696 6.88072 6.99974 7.21561 7.22210 7.62097 7.90594 8.01216 8.30827 8.53907 9.43010 9.97778 10.34143 11.35118 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.002622 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.056779 B =10676.088484 C =12081.927385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.114 3.886 6 N -0.709 5.709 7 C 0.518 3.482 8 O -0.553 6.553 9 C -0.120 4.120 10 H 0.098 0.902 11 C -0.114 4.114 12 C -0.133 4.133 13 C 0.104 3.896 14 N -0.608 5.608 15 C 0.544 3.456 16 O -0.542 6.542 17 C -0.196 4.196 18 C -0.152 4.152 19 C -0.149 4.149 20 C 0.134 3.866 21 N -0.721 5.721 22 C -0.236 4.236 23 H 0.073 0.927 24 C -0.011 4.011 25 N -0.929 5.929 26 Si 0.902 3.098 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.084 0.916 31 H 0.032 0.968 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.410 0.590 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.126 0.874 45 H 0.099 0.901 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.097 0.903 50 H 0.078 0.922 51 H 0.385 0.615 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.251 9.351 4.852 17.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.010 4.010 6 N -0.360 5.360 7 C 0.303 3.697 8 O -0.432 6.432 9 C -0.142 4.142 10 H 0.116 0.884 11 C -0.152 4.152 12 C -0.171 4.171 13 C -0.019 4.019 14 N -0.340 5.340 15 C 0.333 3.667 16 O -0.419 6.419 17 C -0.216 4.216 18 C -0.190 4.190 19 C -0.186 4.186 20 C 0.012 3.988 21 N -0.363 5.363 22 C -0.367 4.367 23 H 0.090 0.910 24 C -0.207 4.207 25 N -0.577 5.577 26 Si 0.733 3.267 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.247 0.753 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.144 0.856 45 H 0.117 0.883 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.126 0.874 49 H 0.115 0.885 50 H 0.096 0.904 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.785 8.448 5.529 17.903 hybrid contribution -1.386 0.742 -0.689 1.716 sum 13.399 9.190 4.840 16.953 Atomic orbital electron populations 1.21768 0.95722 0.99638 1.03232 1.22067 0.96955 0.98405 1.00034 1.20567 0.89963 0.92807 0.91408 0.92881 1.21672 0.95579 0.82685 1.01087 1.45965 1.07034 1.10797 1.72184 1.20283 0.82643 0.90311 0.76417 1.90679 1.56103 1.46434 1.50003 1.21631 0.97149 0.94847 1.00586 0.88403 1.21542 1.02879 0.95672 0.95073 1.21923 0.94639 0.97329 1.03255 1.21866 0.95617 0.98069 0.86361 1.48110 1.48681 1.16462 1.20774 1.19653 0.78000 0.86565 0.82518 1.90695 1.57791 1.66785 1.26617 1.22238 0.95571 0.95936 1.07904 1.22945 0.92425 1.03724 0.99880 1.22971 1.00880 1.00910 0.93844 1.21390 0.91410 0.81749 1.04271 1.42446 1.16752 1.65837 1.11269 1.19204 0.91970 1.27589 0.97947 0.90954 1.24715 0.98008 1.01618 0.96367 1.69659 1.35183 1.48973 1.03908 0.86277 0.84233 0.79298 0.76884 1.21799 1.21884 1.20790 0.89668 0.94883 0.94141 0.92528 0.93852 0.91836 0.91901 0.75316 0.89703 0.90907 0.91209 0.89810 0.90934 0.89473 0.85632 0.88253 0.87756 0.87910 0.87416 0.88452 0.90351 0.78107 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.18 37.16 0.34 -2.23 16 2 C -0.13 -2.27 5.61 -26.73 -0.15 -2.42 16 3 C 0.16 2.93 2.59 -67.93 -0.18 2.75 16 4 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 5 C 0.11 1.90 5.23 -4.05 -0.02 1.88 16 6 N -0.71 -11.33 5.27 -60.30 -0.32 -11.65 16 7 C 0.52 8.30 7.16 -10.99 -0.08 8.22 16 8 O -0.55 -10.57 15.92 5.56 0.09 -10.48 16 9 C -0.12 -1.55 2.68 -91.65 -0.25 -1.79 16 10 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 11 C -0.11 -1.33 5.07 -26.69 -0.14 -1.47 16 12 C -0.13 -1.20 6.08 -26.61 -0.16 -1.36 16 13 C 0.10 0.86 6.34 -3.71 -0.02 0.84 16 14 N -0.61 -6.87 2.98 -172.54 -0.51 -7.39 16 15 C 0.54 6.73 7.49 -10.98 -0.08 6.64 16 16 O -0.54 -8.80 15.69 5.56 0.09 -8.71 16 17 C -0.20 -1.67 5.12 -91.77 -0.47 -2.14 16 18 C -0.15 -1.07 10.24 -26.69 -0.27 -1.35 16 19 C -0.15 -1.16 10.05 -26.70 -0.27 -1.43 16 20 C 0.13 1.79 5.07 -3.56 -0.02 1.77 16 21 N -0.72 -15.78 4.51 -53.42 -0.24 -16.02 16 22 C -0.24 -5.79 7.75 -15.06 -0.12 -5.91 16 23 H 0.07 1.75 7.32 -52.49 -0.38 1.37 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 25 N -0.93 -25.72 13.06 55.49 0.72 -25.00 16 26 Si 0.90 20.93 29.55 -169.99 -5.02 15.91 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 H 0.08 1.77 5.99 -51.93 -0.31 1.46 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.41 6.59 7.54 -40.82 -0.31 6.28 16 38 H 0.08 1.12 7.53 -51.93 -0.39 0.72 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.53 5.51 -51.93 -0.29 0.25 16 44 H 0.13 0.80 6.57 -51.93 -0.34 0.46 16 45 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.11 1.03 7.67 -51.93 -0.40 0.63 16 49 H 0.10 1.51 7.02 -51.93 -0.36 1.15 16 50 H 0.08 1.09 7.96 -51.93 -0.41 0.67 16 51 H 0.38 9.23 7.80 -40.82 -0.32 8.91 16 52 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 410.76 15.07 6.19 6.19 Total: -1.00 -30.54 410.76 -9.97 -40.51 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -8.99 Total: 15.00 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.98 Total: 1.64 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.35 Total: -60.06 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.18 Total: -19.19 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -30.54 -9.97 -40.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665792233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.956 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds