Wall clock time and date at job start Tue Mar 31 2020 20:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47260 * 2 1 4 4 H 1.09005 * 109.46854 * 55.00245 * 3 2 1 5 5 C 1.52994 * 109.47483 * 175.00125 * 3 2 1 6 6 N 1.46492 * 109.47266 * 175.00132 * 5 3 2 7 7 C 1.34776 * 120.00086 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00274 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00181 * 180.02562 * 7 6 5 10 10 H 1.09000 * 109.49910 * 60.06007 * 9 7 6 11 11 C 1.53038 * 109.49914 * 299.99782 * 9 7 6 12 12 C 1.53035 * 109.54175 * 178.68279 * 11 9 7 13 13 C 1.53191 * 109.31327 * 61.36680 * 12 11 9 14 14 N 1.46926 * 108.89109 * 305.29292 * 13 12 11 15 15 C 1.34778 * 120.63336 * 233.68039 * 14 13 12 16 16 O 1.21273 * 120.00022 * 180.02562 * 15 14 13 17 17 C 1.50706 * 119.99581 * 0.02562 * 15 14 13 18 18 C 1.53001 * 117.49617 * 248.74453 * 17 15 14 19 19 C 1.52998 * 117.49369 * 180.08940 * 17 15 14 20 20 C 1.47207 * 118.55531 * 53.54119 * 14 13 12 21 21 N 1.46500 * 109.47118 * 295.00292 * 3 2 1 22 22 C 1.36942 * 119.99789 * 84.99364 * 21 3 2 23 23 H 1.07995 * 120.00206 * 0.02562 * 22 21 3 24 24 C 1.38815 * 119.99782 * 180.02562 * 22 21 3 25 25 N 1.31625 * 119.99943 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 119.99932 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.47134 * 90.00117 * 26 24 22 28 28 H 1.48500 * 109.47331 * 209.99920 * 26 24 22 29 29 H 1.48502 * 109.47264 * 329.99860 * 26 24 22 30 30 H 1.09003 * 109.47194 * 59.99973 * 1 2 3 31 31 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46970 * 299.99582 * 1 2 3 33 33 H 1.09005 * 109.47005 * 240.00399 * 2 1 3 34 34 H 1.09000 * 109.47465 * 120.00479 * 2 1 3 35 35 H 1.09002 * 109.46809 * 54.99832 * 5 3 2 36 36 H 1.09005 * 109.47129 * 295.00496 * 5 3 2 37 37 H 0.96999 * 120.00102 * 359.97438 * 6 5 3 38 38 H 1.09003 * 109.46001 * 58.65612 * 11 9 7 39 39 H 1.09004 * 109.46331 * 298.70671 * 11 9 7 40 40 H 1.09003 * 109.49576 * 301.41349 * 12 11 9 41 41 H 1.09000 * 109.52700 * 181.33397 * 12 11 9 42 42 H 1.09002 * 109.58786 * 65.15336 * 13 12 11 43 43 H 1.08996 * 109.58870 * 185.43616 * 13 12 11 44 44 H 1.08999 * 115.55287 * 34.41336 * 17 15 14 45 45 H 1.09008 * 117.49649 * 0.02562 * 18 17 15 46 46 H 1.08997 * 117.49980 * 145.02365 * 18 17 15 47 47 H 1.09001 * 117.49584 * 214.98027 * 19 17 15 48 48 H 1.09002 * 117.50282 * 359.97039 * 19 17 15 49 49 H 1.08996 * 109.53610 * 186.67231 * 20 14 13 50 50 H 1.08997 * 109.56315 * 66.29677 * 20 14 13 51 51 H 0.96991 * 120.00104 * 265.00071 * 21 3 2 52 52 H 0.96998 * 119.99921 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4444 0.1257 6 7 4.0630 2.8168 0.0059 7 6 5.3857 3.0630 0.0858 8 8 6.1635 2.1484 0.2572 9 6 5.8981 4.4749 -0.0368 10 1 5.4690 5.0878 0.7559 11 6 5.4976 5.0473 -1.3984 12 6 5.9891 6.4921 -1.5110 13 6 7.5172 6.5170 -1.4067 14 7 7.9205 5.8403 -0.1665 15 6 8.7242 6.4572 0.7224 16 8 9.0503 5.8876 1.7422 17 6 9.2175 7.8547 0.4489 18 6 10.7091 8.0330 0.1581 19 6 10.1284 8.4996 1.4954 20 6 7.4253 4.4769 0.0842 21 7 1.6524 2.0975 -1.2518 22 6 0.4155 2.6735 -1.3687 23 1 -0.2740 2.6452 -0.5380 24 6 0.0480 3.2936 -2.5550 25 7 0.8883 3.3277 -3.5676 26 14 -1.6389 4.0798 -2.7143 27 1 -1.5660 5.4995 -2.2844 28 1 -2.0843 4.0135 -4.1293 29 1 -2.6074 3.3517 -1.8558 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.9953 0.8312 -0.6660 36 1 3.8499 1.0377 1.0960 37 1 3.4410 3.5483 -0.1315 38 1 4.4123 5.0241 -1.4971 39 1 5.9467 4.4482 -2.1906 40 1 5.5596 7.0864 -0.7043 41 1 5.6832 6.9073 -2.4713 42 1 7.9504 5.9997 -2.2628 43 1 7.8656 7.5497 -1.3893 44 1 8.5204 8.5042 -0.0805 45 1 11.3334 7.1395 0.1643 46 1 10.9932 8.8001 -0.5622 47 1 10.0308 9.5735 1.6543 48 1 10.3705 7.9134 2.3819 49 1 7.7127 4.1635 1.0878 50 1 7.8509 3.7932 -0.6502 51 1 2.2718 2.1232 -1.9977 52 1 0.6314 3.7607 -4.3966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665792233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:38 Heat of formation + Delta-G solvation = -68.574678 kcal Electronic energy + Delta-G solvation = -30052.707613 eV Core-core repulsion = 26051.801874 eV Total energy + Delta-G solvation = -4000.905739 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.69912 -40.72444 -38.67184 -38.07392 -36.99569 -35.30231 -34.33130 -33.84275 -32.34117 -31.48090 -29.52156 -27.22735 -26.03147 -25.29564 -24.26775 -23.54748 -23.28770 -22.24457 -21.61518 -20.77810 -19.84528 -19.22997 -18.70910 -17.88826 -17.25981 -16.92507 -16.86992 -16.48321 -16.08648 -15.82274 -15.56400 -15.42442 -15.19511 -15.04971 -14.75169 -14.63672 -14.47445 -14.11629 -13.97369 -13.73787 -13.62668 -13.42805 -12.98566 -12.78881 -12.73611 -12.60707 -12.44302 -12.35670 -12.14702 -12.11217 -12.00913 -11.86075 -11.70196 -11.62321 -11.49963 -11.37853 -11.32730 -10.98011 -10.88856 -10.71443 -10.03484 -9.75711 -8.95154 -7.85187 -5.11938 1.40870 1.50977 1.53544 1.58107 1.59382 1.76961 2.35190 2.61418 2.91650 3.39843 3.47994 3.56920 3.72821 3.77865 3.83861 3.90480 3.96441 3.97677 4.03599 4.07405 4.18724 4.22893 4.38004 4.47879 4.49353 4.55232 4.59242 4.71202 4.74082 4.75830 4.76826 4.84904 4.88237 4.92705 5.04173 5.05965 5.09345 5.12435 5.14709 5.20731 5.24205 5.31829 5.41523 5.47385 5.57028 5.63654 5.71846 6.34369 6.34897 6.56166 7.08122 7.20835 7.43361 8.13739 8.40041 9.37310 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.002622 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.056779 B =10676.088484 C =12081.927385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.058 0.942 5 C 0.122 3.878 6 N -0.706 5.706 7 C 0.516 3.484 8 O -0.586 6.586 9 C -0.107 4.107 10 H 0.107 0.893 11 C -0.109 4.109 12 C -0.127 4.127 13 C 0.101 3.899 14 N -0.605 5.605 15 C 0.534 3.466 16 O -0.592 6.592 17 C -0.200 4.200 18 C -0.138 4.138 19 C -0.154 4.154 20 C 0.140 3.860 21 N -0.725 5.725 22 C -0.216 4.216 23 H 0.077 0.923 24 C -0.068 4.068 25 N -0.963 5.963 26 Si 0.956 3.044 27 H -0.289 1.289 28 H -0.305 1.305 29 H -0.275 1.275 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.411 0.589 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.157 0.843 45 H 0.083 0.917 46 H 0.137 0.863 47 H 0.130 0.870 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.373 0.627 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.193 11.195 5.010 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.076 0.924 5 C -0.003 4.003 6 N -0.356 5.356 7 C 0.303 3.697 8 O -0.468 6.468 9 C -0.129 4.129 10 H 0.125 0.875 11 C -0.147 4.147 12 C -0.165 4.165 13 C -0.020 4.020 14 N -0.336 5.336 15 C 0.325 3.675 16 O -0.473 6.473 17 C -0.220 4.220 18 C -0.176 4.176 19 C -0.191 4.191 20 C 0.017 3.983 21 N -0.366 5.366 22 C -0.348 4.348 23 H 0.095 0.905 24 C -0.261 4.261 25 N -0.614 5.614 26 Si 0.787 3.213 27 H -0.216 1.216 28 H -0.232 1.232 29 H -0.201 1.201 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.248 0.752 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.099 0.901 43 H 0.138 0.862 44 H 0.175 0.825 45 H 0.102 0.898 46 H 0.155 0.845 47 H 0.148 0.852 48 H 0.099 0.901 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.206 0.794 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.701 10.294 5.708 18.833 hybrid contribution -1.341 0.055 -0.652 1.492 sum 13.360 10.350 5.056 17.640 Atomic orbital electron populations 1.21693 0.95913 1.00563 1.01815 1.21995 0.96667 0.97444 1.00968 1.20686 0.90755 0.93243 0.89642 0.92443 1.21565 0.94492 0.82978 1.01277 1.45951 1.07155 1.10590 1.71922 1.20807 0.82236 0.91299 0.75360 1.90660 1.56781 1.47785 1.51530 1.21549 0.96693 0.92885 1.01802 0.87520 1.21507 1.01876 0.97679 0.93675 1.21913 0.95023 0.95047 1.04486 1.22129 0.95145 0.99705 0.85010 1.48208 1.48182 1.15526 1.21696 1.20454 0.77365 0.87930 0.81744 1.90670 1.59590 1.68302 1.28780 1.22311 0.96946 0.93657 1.09106 1.23055 0.90809 1.03785 0.99913 1.23037 1.00889 1.01957 0.93235 1.21111 0.91620 0.83235 1.02355 1.42531 1.15796 1.66032 1.12214 1.19453 0.92488 1.25421 0.97448 0.90477 1.25303 1.00705 1.03427 0.96635 1.69792 1.36617 1.50859 1.04179 0.85400 0.81348 0.78595 0.75959 1.21615 1.23219 1.20052 0.93146 0.92934 0.93275 0.93568 0.90901 0.93076 0.90611 0.75200 0.91171 0.91737 0.90652 0.87997 0.90126 0.86166 0.82532 0.89806 0.84511 0.85228 0.90061 0.91238 0.91312 0.79448 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.18 71.98 0.66 -4.10 16 2 C -0.13 -4.21 5.61 30.60 0.17 -4.04 16 3 C 0.17 5.79 2.59 44.99 0.12 5.90 16 4 H 0.06 2.00 8.08 -2.38 -0.02 1.98 16 5 C 0.12 3.99 5.23 86.38 0.45 4.44 16 6 N -0.71 -22.62 5.27 -463.08 -2.44 -25.06 16 7 C 0.52 16.83 7.16 87.66 0.63 17.46 16 8 O -0.59 -23.02 15.92 -3.04 -0.05 -23.07 16 9 C -0.11 -2.78 2.68 -11.46 -0.03 -2.81 16 10 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 11 C -0.11 -2.49 5.07 30.62 0.16 -2.34 16 12 C -0.13 -1.98 6.08 30.67 0.19 -1.79 16 13 C 0.10 1.42 6.34 86.36 0.55 1.97 16 14 N -0.60 -13.21 2.98 -818.19 -2.44 -15.65 16 15 C 0.53 12.97 7.49 87.66 0.66 13.63 16 16 O -0.59 -20.04 15.69 -3.01 -0.05 -20.09 16 17 C -0.20 -2.92 5.12 -11.54 -0.06 -2.98 16 18 C -0.14 -1.60 10.24 30.62 0.31 -1.28 16 19 C -0.15 -2.13 10.05 30.62 0.31 -1.83 16 20 C 0.14 3.86 5.07 86.31 0.44 4.30 16 21 N -0.73 -31.66 4.51 -322.93 -1.46 -33.11 16 22 C -0.22 -10.51 7.75 84.03 0.65 -9.85 16 23 H 0.08 3.64 7.32 -2.91 -0.02 3.62 16 24 C -0.07 -3.56 5.50 84.86 0.47 -3.09 16 25 N -0.96 -54.08 13.06 21.65 0.28 -53.80 16 26 Si 0.96 43.08 29.55 68.60 2.03 45.11 16 27 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 28 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 29 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 30 H 0.05 2.04 5.99 -2.39 -0.01 2.02 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.41 13.17 7.54 -92.71 -0.70 12.47 16 38 H 0.07 1.83 7.53 -2.39 -0.02 1.81 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.12 0.94 5.51 -2.39 -0.01 0.92 16 44 H 0.16 1.29 6.57 -2.39 -0.02 1.27 16 45 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 46 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.08 1.58 7.67 -2.39 -0.02 1.56 16 49 H 0.07 2.31 7.02 -2.39 -0.02 2.29 16 50 H 0.07 2.00 7.96 -2.39 -0.02 1.98 16 51 H 0.37 18.13 7.80 -92.71 -0.72 17.41 16 52 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -68.47 410.76 1.04 -67.44 By element: Atomic # 1 Polarization: 45.15 SS G_CDS: -0.50 Total: 44.65 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 5.66 Total: 13.58 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -6.06 Total: -127.62 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -0.10 Total: -43.16 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -68.47 1.04 -67.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665792233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.136 kcal (2) G-P(sol) polarization free energy of solvation -68.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds