Wall clock time and date at job start Tue Mar 31 2020 20:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 C 1.52999 * 109.47054 * 185.00114 * 3 2 1 6 6 N 1.46496 * 109.46967 * 185.00364 * 5 3 2 7 7 C 1.34781 * 120.00112 * 180.02562 * 6 5 3 8 8 O 1.21279 * 119.99773 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00149 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.50054 * 299.93549 * 9 7 6 11 11 C 1.53042 * 109.49651 * 59.99704 * 9 7 6 12 12 C 1.53042 * 109.53747 * 181.31414 * 11 9 7 13 13 C 1.53181 * 109.31449 * 298.63821 * 12 11 9 14 14 N 1.46927 * 108.77763 * 54.63562 * 13 12 11 15 15 C 1.34775 * 120.63276 * 126.41457 * 14 13 12 16 16 O 1.21282 * 119.99741 * 179.97438 * 15 14 13 17 17 C 1.50697 * 120.00114 * 359.97438 * 15 14 13 18 18 C 1.52999 * 117.50137 * 248.74799 * 17 15 14 19 19 C 1.52998 * 117.49949 * 180.09015 * 17 15 14 20 20 C 1.46930 * 118.73475 * 306.38947 * 14 13 12 21 21 N 1.46498 * 109.46687 * 65.00113 * 3 2 1 22 22 C 1.36933 * 120.00205 * 274.99830 * 21 3 2 23 23 H 1.07999 * 120.00144 * 0.02562 * 22 21 3 24 24 C 1.38813 * 120.00301 * 180.02562 * 22 21 3 25 25 N 1.31616 * 119.99824 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00300 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46891 * 90.00108 * 26 24 22 28 28 H 1.48499 * 109.47298 * 209.99905 * 26 24 22 29 29 H 1.48496 * 109.47073 * 329.99931 * 26 24 22 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 33 33 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 34 34 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 35 35 H 1.08999 * 109.46840 * 305.00235 * 5 3 2 36 36 H 1.09001 * 109.47277 * 65.00156 * 5 3 2 37 37 H 0.97004 * 120.00126 * 359.97438 * 6 5 3 38 38 H 1.08994 * 109.46094 * 301.33974 * 11 9 7 39 39 H 1.09005 * 109.46056 * 61.31192 * 11 9 7 40 40 H 1.09002 * 109.49315 * 58.59401 * 12 11 9 41 41 H 1.09007 * 109.49879 * 178.64768 * 12 11 9 42 42 H 1.09000 * 109.58910 * 174.42148 * 13 12 11 43 43 H 1.09002 * 109.58934 * 294.84477 * 13 12 11 44 44 H 1.08999 * 115.55073 * 34.41707 * 17 15 14 45 45 H 1.09003 * 117.49584 * 0.02562 * 18 17 15 46 46 H 1.09004 * 117.50252 * 145.01600 * 18 17 15 47 47 H 1.09003 * 117.49829 * 214.97737 * 19 17 15 48 48 H 1.09000 * 117.50144 * 359.97408 * 19 17 15 49 49 H 1.09000 * 109.58868 * 293.82182 * 20 14 13 50 50 H 1.09002 * 109.58606 * 173.39450 * 20 14 13 51 51 H 0.96999 * 119.99886 * 95.00381 * 21 3 2 52 52 H 0.97002 * 120.00343 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0059 7 6 5.3856 3.0631 -0.0868 8 8 6.1634 2.1485 -0.2583 9 6 5.8981 4.4750 0.0359 10 1 5.4684 5.0882 -0.7562 11 6 5.4985 5.0468 1.3981 12 6 5.9902 6.4917 1.5108 13 6 7.5181 6.5167 1.4053 14 7 7.9177 5.8384 0.1647 15 6 8.7211 6.4530 -0.7259 16 8 9.0441 5.8822 -1.7461 17 6 9.2181 7.8495 -0.4541 18 6 8.6816 8.9753 -1.3404 19 6 10.1252 8.4935 -1.5045 20 6 7.4251 4.4771 -0.0863 21 7 1.6524 2.0974 1.2518 22 6 0.4156 2.6734 1.3689 23 1 -0.2743 2.6446 0.5385 24 6 0.0486 3.2944 2.5549 25 7 0.8895 3.3300 3.5667 26 14 -1.6383 4.0807 2.7143 27 1 -2.6051 3.0782 3.2298 28 1 -1.5635 5.2262 3.6564 29 1 -2.0875 4.5629 1.3836 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.9953 0.8311 0.6659 36 1 3.8499 1.0378 -1.0961 37 1 3.4409 3.5484 0.1309 38 1 4.4134 5.0235 1.4976 39 1 5.9486 4.4476 2.1897 40 1 5.5599 7.0862 0.7048 41 1 5.6845 6.9062 2.4715 42 1 7.8662 7.5494 1.3854 43 1 7.9521 5.9991 2.2608 44 1 9.4150 8.0831 0.5922 45 1 7.9688 8.7060 -2.1199 46 1 8.5258 9.9497 -0.8773 47 1 10.9186 9.1511 -1.1493 48 1 10.3628 7.9070 -2.3920 49 1 7.8513 3.7931 0.6476 50 1 7.7117 4.1641 -1.0903 51 1 2.2719 2.1231 1.9978 52 1 0.6332 3.7643 4.3954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665792234.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:41 Heat of formation + Delta-G solvation = -68.963690 kcal Electronic energy + Delta-G solvation = -30112.886014 eV Core-core repulsion = 26111.963405 eV Total energy + Delta-G solvation = -4000.922608 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.70990 -40.72405 -38.67192 -38.07448 -36.99623 -35.30192 -34.33267 -33.84422 -32.34214 -31.48079 -29.52146 -27.22570 -26.03291 -25.29372 -24.24916 -23.53369 -23.30014 -22.26932 -21.61792 -20.79504 -19.77476 -19.23530 -18.75287 -17.86501 -17.23687 -16.92301 -16.85209 -16.35549 -16.28322 -15.83003 -15.55737 -15.41709 -15.26743 -14.98659 -14.71971 -14.61061 -14.46064 -14.11999 -13.98479 -13.73114 -13.64192 -13.44044 -12.97552 -12.79162 -12.76823 -12.60024 -12.43305 -12.34067 -12.13577 -12.08908 -12.01156 -11.87386 -11.69834 -11.61836 -11.50496 -11.37864 -11.32723 -10.98097 -10.89154 -10.71653 -10.03442 -9.75370 -8.95194 -7.85057 -5.11844 1.40849 1.51015 1.53654 1.58198 1.59454 1.77089 2.35786 2.61514 2.92155 3.39995 3.48114 3.57178 3.73034 3.78074 3.84652 3.90814 3.96516 3.99010 4.03262 4.09407 4.18859 4.23276 4.37991 4.47814 4.49078 4.55083 4.58748 4.71469 4.74921 4.76475 4.77358 4.84153 4.88124 4.92350 5.04142 5.06691 5.09322 5.12370 5.14578 5.20782 5.24508 5.32316 5.42696 5.47453 5.57044 5.63659 5.71729 6.34284 6.34954 6.56241 7.08217 7.20940 7.43421 8.13781 8.40105 9.37441 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.002692 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.912892 B =10399.915782 C =11784.944563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.058 0.942 5 C 0.122 3.878 6 N -0.706 5.706 7 C 0.516 3.484 8 O -0.586 6.586 9 C -0.107 4.107 10 H 0.106 0.894 11 C -0.109 4.109 12 C -0.125 4.125 13 C 0.101 3.899 14 N -0.605 5.605 15 C 0.534 3.466 16 O -0.592 6.592 17 C -0.199 4.199 18 C -0.138 4.138 19 C -0.154 4.154 20 C 0.140 3.860 21 N -0.725 5.725 22 C -0.216 4.216 23 H 0.077 0.923 24 C -0.068 4.068 25 N -0.963 5.963 26 Si 0.956 3.044 27 H -0.297 1.297 28 H -0.300 1.300 29 H -0.271 1.271 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.411 0.589 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.081 0.919 44 H 0.157 0.843 45 H 0.083 0.917 46 H 0.136 0.864 47 H 0.130 0.870 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.373 0.627 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.441 11.631 -5.497 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.076 0.924 5 C -0.003 4.003 6 N -0.356 5.356 7 C 0.303 3.697 8 O -0.468 6.468 9 C -0.129 4.129 10 H 0.124 0.876 11 C -0.147 4.147 12 C -0.163 4.163 13 C -0.020 4.020 14 N -0.336 5.336 15 C 0.325 3.675 16 O -0.473 6.473 17 C -0.219 4.219 18 C -0.176 4.176 19 C -0.191 4.191 20 C 0.016 3.984 21 N -0.366 5.366 22 C -0.348 4.348 23 H 0.095 0.905 24 C -0.261 4.261 25 N -0.614 5.614 26 Si 0.787 3.213 27 H -0.225 1.225 28 H -0.227 1.227 29 H -0.196 1.196 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.248 0.752 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.138 0.862 43 H 0.099 0.901 44 H 0.174 0.826 45 H 0.102 0.898 46 H 0.154 0.846 47 H 0.148 0.852 48 H 0.099 0.901 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.205 0.795 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.953 10.747 -6.198 18.671 hybrid contribution -1.267 -0.015 0.709 1.452 sum 12.686 10.732 -5.489 17.499 Atomic orbital electron populations 1.21697 0.95900 1.00574 1.01826 1.21996 0.96693 0.97447 1.00961 1.20685 0.90752 0.93237 0.89642 0.92445 1.21566 0.94495 0.82984 1.01268 1.45954 1.07161 1.10579 1.71928 1.20814 0.82234 0.91311 0.75359 1.90660 1.56789 1.47782 1.51524 1.21547 0.96707 0.92852 1.01781 0.87573 1.21512 1.01878 0.97692 0.93662 1.21891 0.95000 0.94991 1.04442 1.22134 0.95319 0.99619 0.84919 1.48139 1.48146 1.15532 1.21776 1.20470 0.77273 0.87961 0.81814 1.90672 1.59670 1.68035 1.28950 1.22294 1.08968 0.89882 1.00804 1.23050 0.96832 0.97354 1.00332 1.23038 0.94749 1.02163 0.99158 1.21064 0.91638 0.83302 1.02371 1.42530 1.15775 1.66056 1.12210 1.19453 0.92450 1.25415 0.97495 0.90472 1.25301 1.00670 1.03425 0.96661 1.69788 1.36531 1.50873 1.04255 0.85402 0.81138 0.77482 0.77292 1.22530 1.22738 1.19625 0.92935 0.93148 0.93225 0.90902 0.93584 0.93082 0.90621 0.75199 0.91170 0.91743 0.90702 0.88040 0.86153 0.90077 0.82561 0.89839 0.84551 0.85205 0.90070 0.91333 0.91223 0.79451 0.94399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.18 71.98 0.66 -4.09 16 2 C -0.13 -4.21 5.61 30.60 0.17 -4.04 16 3 C 0.17 5.79 2.59 44.99 0.12 5.91 16 4 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 5 C 0.12 3.99 5.23 86.38 0.45 4.44 16 6 N -0.71 -22.61 5.27 -463.07 -2.44 -25.06 16 7 C 0.52 16.83 7.16 87.66 0.63 17.46 16 8 O -0.59 -23.04 15.92 -3.03 -0.05 -23.09 16 9 C -0.11 -2.77 2.68 -11.46 -0.03 -2.80 16 10 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 11 C -0.11 -2.50 5.07 30.62 0.16 -2.34 16 12 C -0.13 -1.96 6.08 30.67 0.19 -1.78 16 13 C 0.10 1.41 6.30 86.36 0.54 1.96 16 14 N -0.60 -13.18 2.97 -818.93 -2.43 -15.61 16 15 C 0.53 12.94 7.48 87.66 0.66 13.60 16 16 O -0.59 -20.01 15.67 -3.04 -0.05 -20.06 16 17 C -0.20 -2.89 4.96 -11.54 -0.06 -2.95 16 18 C -0.14 -1.63 10.24 30.62 0.31 -1.31 16 19 C -0.15 -2.13 10.05 30.62 0.31 -1.82 16 20 C 0.14 3.85 5.06 86.36 0.44 4.28 16 21 N -0.73 -31.65 4.51 -322.94 -1.46 -33.10 16 22 C -0.22 -10.50 7.75 84.03 0.65 -9.85 16 23 H 0.08 3.64 7.32 -2.91 -0.02 3.62 16 24 C -0.07 -3.55 5.50 84.86 0.47 -3.08 16 25 N -0.96 -54.06 13.06 21.65 0.28 -53.77 16 26 Si 0.96 43.05 29.55 68.60 2.03 45.08 16 27 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 28 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 31 H 0.05 2.03 5.99 -2.39 -0.01 2.02 16 32 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.41 13.16 7.54 -92.71 -0.70 12.46 16 38 H 0.07 1.83 7.53 -2.39 -0.02 1.81 16 39 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.12 0.94 5.68 -2.39 -0.01 0.93 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.16 1.26 6.82 -2.39 -0.02 1.24 16 45 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.08 1.58 7.67 -2.39 -0.02 1.56 16 49 H 0.07 1.99 7.96 -2.39 -0.02 1.97 16 50 H 0.07 2.31 7.01 -2.39 -0.02 2.30 16 51 H 0.37 18.13 7.80 -92.71 -0.72 17.41 16 52 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -68.46 410.91 1.04 -67.42 By element: Atomic # 1 Polarization: 45.12 SS G_CDS: -0.50 Total: 44.62 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 5.66 Total: 13.57 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -6.05 Total: -127.54 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -0.10 Total: -43.15 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -68.46 1.04 -67.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665792234.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.547 kcal (2) G-P(sol) polarization free energy of solvation -68.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds