Wall clock time and date at job start Tue Mar 31 2020 20:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47197 * 2 1 4 4 H 1.09003 * 109.47434 * 54.59908 * 3 2 1 5 5 C 1.53003 * 109.47039 * 294.60320 * 3 2 1 6 6 N 1.46497 * 109.47374 * 184.99720 * 5 3 2 7 7 C 1.34773 * 120.00437 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99945 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00361 * 180.02562 * 7 6 5 10 10 H 1.08998 * 110.09407 * 22.93237 * 9 7 6 11 11 C 1.54381 * 110.07206 * 144.45010 * 9 7 6 12 12 C 1.54925 * 104.33914 * 142.72677 * 11 9 7 13 13 C 1.55124 * 102.75926 * 322.44843 * 12 11 9 14 14 C 1.53481 * 110.06869 * 261.41900 * 9 7 6 15 15 C 1.52575 * 121.05581 * 96.52553 * 14 9 7 16 16 C 1.52561 * 121.08096 * 24.81669 * 14 9 7 17 17 N 1.46894 * 109.47444 * 174.60397 * 3 2 1 18 18 C 1.46900 * 111.00009 * 273.06020 * 17 3 2 19 19 C 1.50698 * 109.47221 * 182.86050 * 18 17 3 20 20 O 1.21292 * 120.00264 * 359.97438 * 19 18 17 21 21 N 1.34784 * 119.99960 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99779 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00248 * 359.97438 * 22 21 19 24 24 C 1.38953 * 119.99622 * 180.02562 * 22 21 19 25 25 N 1.31408 * 119.99646 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00028 * 359.97438 * 24 22 21 27 27 H 1.48496 * 109.47407 * 90.00193 * 26 24 22 28 28 H 1.48508 * 109.47007 * 210.00038 * 26 24 22 29 29 H 1.48506 * 109.47298 * 329.99882 * 26 24 22 30 30 H 1.09002 * 109.46907 * 178.06059 * 1 2 3 31 31 H 1.09003 * 109.47252 * 298.06125 * 1 2 3 32 32 H 1.09004 * 109.46885 * 58.06488 * 1 2 3 33 33 H 1.09005 * 109.47069 * 239.99990 * 2 1 3 34 34 H 1.09001 * 109.47147 * 119.99876 * 2 1 3 35 35 H 1.08999 * 109.46981 * 64.99723 * 5 3 2 36 36 H 1.09000 * 109.47255 * 305.00097 * 5 3 2 37 37 H 0.97004 * 119.99586 * 0.02562 * 6 5 3 38 38 H 1.09001 * 110.47766 * 261.48026 * 11 9 7 39 39 H 1.08996 * 110.48125 * 23.97681 * 11 9 7 40 40 H 1.09004 * 110.73839 * 80.67708 * 12 11 9 41 41 H 1.08999 * 110.74364 * 204.00650 * 12 11 9 42 42 H 1.09001 * 110.39512 * 278.75539 * 13 12 11 43 43 H 1.08998 * 110.55169 * 156.09862 * 13 12 11 44 44 H 1.08998 * 117.51269 * 356.98711 * 15 14 9 45 45 H 1.09001 * 117.50639 * 142.06603 * 15 14 9 46 46 H 1.09002 * 117.50660 * 217.89251 * 16 14 9 47 47 H 1.08997 * 117.50752 * 2.93838 * 16 14 9 48 48 H 1.00905 * 111.00410 * 149.10395 * 17 3 2 49 49 H 1.09002 * 109.46667 * 302.86368 * 18 17 3 50 50 H 1.08998 * 109.47054 * 62.85816 * 18 17 3 51 51 H 0.97001 * 119.99576 * 0.02562 * 21 19 18 52 52 H 0.97002 * 119.99896 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5999 1.9836 0.8377 5 6 1.6438 2.1235 -1.3116 6 7 2.2329 3.4638 -1.3633 7 6 2.0178 4.2537 -2.4340 8 8 1.3361 3.8550 -3.3544 9 6 2.6243 5.6322 -2.4874 10 1 3.4929 5.6849 -1.8311 11 6 3.0332 5.9753 -3.9361 12 6 2.7079 7.4832 -4.0796 13 6 1.3941 7.6291 -3.2678 14 6 1.5847 6.6815 -2.0705 15 6 1.5291 7.2092 -0.6400 16 6 0.4089 6.3114 -1.1716 17 7 3.5032 1.4446 0.1302 18 6 3.9060 1.4151 1.5426 19 6 5.4082 1.4890 1.6382 20 8 6.0774 1.5589 0.6290 21 7 6.0080 1.4775 2.8451 22 6 7.3745 1.5453 2.9321 23 1 7.9704 1.6075 2.0335 24 6 7.9929 1.5329 4.1763 25 7 9.3027 1.5983 4.2597 26 14 6.9623 1.4245 5.7305 27 1 6.7612 -0.0014 6.0927 28 1 7.6627 2.1226 6.8385 29 1 5.6439 2.0665 5.4959 30 1 -0.3633 -1.0271 -0.0348 31 1 -0.3634 0.4834 0.9069 32 1 -0.3633 0.5436 -0.8722 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5580 2.2015 -1.3669 36 1 2.0089 1.5334 -2.1522 37 1 2.7784 3.7825 -0.6273 38 1 4.0987 5.7992 -4.0834 39 1 2.4490 5.3899 -4.6460 40 1 3.4997 8.0921 -3.6432 41 1 2.5492 7.7461 -5.1254 42 1 0.5397 7.3180 -3.8688 43 1 1.2678 8.6562 -2.9256 44 1 2.2204 6.7770 0.0834 45 1 1.3040 8.2668 -0.5020 46 1 -0.5531 6.7783 -1.3833 47 1 0.3630 5.2883 -0.7984 48 1 3.9074 2.2379 -0.3446 49 1 3.4664 2.2657 2.0636 50 1 3.5579 0.4892 2.0004 51 1 5.4728 1.4213 3.6522 52 1 9.7345 1.5893 5.1283 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665809085.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:24 Heat of formation + Delta-G solvation = -58.467840 kcal Electronic energy + Delta-G solvation = -29905.402747 eV Core-core repulsion = 25904.935273 eV Total energy + Delta-G solvation = -4000.467474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.73178 -38.96265 -38.27012 -37.22543 -34.51478 -34.14017 -33.88932 -32.73911 -31.69668 -30.02869 -28.32943 -26.44159 -25.79261 -24.18839 -23.54290 -22.79784 -21.56220 -20.71891 -20.41074 -19.52255 -19.08548 -18.39445 -17.24403 -16.62157 -16.23521 -15.98115 -15.47656 -15.36989 -15.22182 -14.87509 -14.79644 -14.36626 -13.98718 -13.92936 -13.55261 -13.51029 -13.15922 -13.05655 -12.75960 -12.64402 -12.57016 -12.26475 -12.05155 -11.86832 -11.78618 -11.73201 -11.52115 -11.32915 -11.26955 -11.19645 -11.13943 -10.85289 -10.67290 -10.63798 -10.55231 -10.32177 -10.02067 -9.65272 -9.62455 -9.22721 -8.64139 -8.29728 -8.22218 -6.35627 -3.87326 2.49614 2.93051 2.97841 3.03136 3.11486 3.49094 3.66952 3.94683 4.05702 4.06166 4.29521 4.47688 4.53591 4.55978 4.68220 4.74714 4.93236 4.97424 4.99065 5.04228 5.16554 5.16991 5.20145 5.33198 5.34508 5.36151 5.42192 5.44619 5.55620 5.56182 5.61005 5.63958 5.68146 5.71799 5.75264 5.79765 5.81864 5.83425 5.86319 5.91216 5.92738 6.06120 6.11096 6.19193 6.31582 6.99348 7.28618 7.44997 7.53025 8.07997 8.09362 8.54345 8.89991 9.37231 9.76532 10.77398 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.002787 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.699808 B =10045.169678 C =11440.799510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C 0.076 3.924 4 H 0.050 0.950 5 C 0.116 3.884 6 N -0.733 5.733 7 C 0.527 3.473 8 O -0.536 6.536 9 C -0.079 4.079 10 H 0.093 0.907 11 C -0.112 4.112 12 C -0.120 4.120 13 C -0.086 4.086 14 C -0.116 4.116 15 C -0.165 4.165 16 C -0.170 4.170 17 N -0.664 5.664 18 C 0.047 3.953 19 C 0.447 3.553 20 O -0.565 6.565 21 N -0.589 5.589 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.880 5.880 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.276 1.276 29 H -0.270 1.270 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.398 0.602 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.350 0.650 49 H 0.044 0.956 50 H 0.089 0.911 51 H 0.370 0.630 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.671 9.107 -8.563 24.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.034 4.034 4 H 0.067 0.933 5 C -0.008 4.008 6 N -0.386 5.386 7 C 0.313 3.687 8 O -0.413 6.413 9 C -0.100 4.100 10 H 0.112 0.888 11 C -0.149 4.149 12 C -0.157 4.157 13 C -0.123 4.123 14 C -0.117 4.117 15 C -0.202 4.202 16 C -0.207 4.207 17 N -0.299 5.299 18 C -0.086 4.086 19 C 0.233 3.767 20 O -0.446 6.446 21 N -0.228 5.228 22 C -0.435 4.435 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.520 5.520 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.233 0.767 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.112 0.888 48 H 0.172 0.828 49 H 0.062 0.938 50 H 0.107 0.893 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.434 8.185 -9.871 24.124 hybrid contribution -0.522 0.822 2.292 2.490 sum -20.956 9.007 -7.579 24.036 Atomic orbital electron populations 1.21855 0.95883 1.01885 1.01705 1.21484 0.94705 0.95198 1.03519 1.21860 0.88818 0.96918 0.95843 0.93251 1.21652 0.98440 0.82310 0.98354 1.46186 1.53975 1.16592 1.21805 1.20454 0.80286 0.86411 0.81501 1.90668 1.39055 1.74831 1.36718 1.21447 0.97879 0.90657 1.00065 0.88834 1.22358 1.01801 0.96713 0.94066 1.22475 0.97177 0.95990 1.00096 1.21892 0.98339 0.97697 0.94400 1.21519 0.99052 0.98714 0.92375 1.23073 1.01859 0.99933 0.95301 1.22983 0.93776 1.00722 1.03231 1.60092 1.06589 1.50709 1.12551 1.21804 0.95444 1.01602 0.89770 1.19688 0.88553 0.84272 0.84189 1.90576 1.65347 1.53716 1.35009 1.42204 1.07864 1.66672 1.06049 1.19431 0.79831 1.47979 0.96241 0.86259 1.25044 0.95666 0.97582 0.97819 1.69620 1.07811 1.49044 1.25488 0.86673 0.80044 0.79004 0.83646 1.19564 1.20156 1.19556 0.92450 0.92905 0.92544 0.90847 0.91231 0.90700 0.90358 0.76714 0.90885 0.89653 0.91173 0.91064 0.90956 0.91413 0.88513 0.88358 0.88546 0.88841 0.82813 0.93770 0.89271 0.79690 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.72 37.16 0.36 -0.93 16 2 C -0.11 -1.13 5.66 -26.73 -0.15 -1.28 16 3 C 0.08 0.83 2.27 -67.71 -0.15 0.67 16 4 H 0.05 0.50 7.72 -51.93 -0.40 0.09 16 5 C 0.12 1.27 4.94 -4.04 -0.02 1.25 16 6 N -0.73 -7.96 4.83 -60.29 -0.29 -8.25 16 7 C 0.53 6.43 5.51 -10.99 -0.06 6.37 16 8 O -0.54 -8.27 15.85 5.56 0.09 -8.18 16 9 C -0.08 -0.80 3.16 -90.80 -0.29 -1.09 16 10 H 0.09 0.88 8.11 -51.93 -0.42 0.46 16 11 C -0.11 -1.09 6.32 -24.99 -0.16 -1.25 16 12 C -0.12 -0.95 6.93 -24.59 -0.17 -1.12 16 13 C -0.09 -0.70 6.58 -25.15 -0.17 -0.86 16 14 C -0.12 -1.05 2.26 -154.25 -0.35 -1.39 16 15 C -0.16 -1.31 10.24 -26.90 -0.28 -1.58 16 16 C -0.17 -1.50 9.63 -26.91 -0.26 -1.76 16 17 N -0.66 -9.58 5.98 -107.99 -0.65 -10.23 16 18 C 0.05 0.72 6.00 -4.98 -0.03 0.69 16 19 C 0.45 9.76 7.81 -10.98 -0.09 9.68 16 20 O -0.56 -14.72 15.71 5.55 0.09 -14.63 16 21 N -0.59 -13.59 5.09 -10.96 -0.06 -13.64 16 22 C -0.31 -8.49 10.16 -14.93 -0.15 -8.65 16 23 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.36 13.96 55.50 0.77 -24.59 16 26 Si 0.88 18.95 27.74 -169.99 -4.71 14.23 16 27 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 28 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 29 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.46 6.60 -51.93 -0.34 0.11 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.75 7.53 -51.93 -0.39 0.36 16 35 H 0.07 0.78 6.78 -51.93 -0.35 0.43 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.40 3.94 7.38 -40.82 -0.30 3.64 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.98 6.97 -51.93 -0.36 0.61 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.09 0.90 7.18 -51.93 -0.37 0.53 16 48 H 0.35 5.30 6.31 -39.29 -0.25 5.05 16 49 H 0.04 0.58 7.98 -51.93 -0.41 0.17 16 50 H 0.09 1.25 7.55 -51.93 -0.39 0.86 16 51 H 0.37 7.48 5.76 -40.82 -0.24 7.24 16 52 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 411.83 15.07 6.21 6.21 Total: -1.00 -33.15 411.83 -9.46 -42.62 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -8.86 Total: 16.69 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -2.05 Total: -0.22 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.22 Total: -56.71 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.18 Total: -22.82 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.71 Total: 14.23 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.15 -9.46 -42.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665809085.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.853 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds