Wall clock time and date at job start Tue Mar 31 2020 20:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46913 * 2 1 4 4 H 1.08996 * 109.47539 * 55.16451 * 3 2 1 5 5 C 1.53008 * 109.47047 * 175.16774 * 3 2 1 6 6 N 1.46501 * 109.47065 * 175.00109 * 5 3 2 7 7 C 1.34775 * 119.99924 * 180.27728 * 6 5 3 8 8 O 1.21285 * 119.99696 * 359.71592 * 7 6 5 9 9 C 1.50696 * 120.00176 * 179.72520 * 7 6 5 10 10 H 1.09002 * 110.04870 * 334.49939 * 9 7 6 11 11 C 1.54384 * 110.07122 * 212.95312 * 9 7 6 12 12 C 1.54922 * 104.22288 * 217.19761 * 11 9 7 13 13 C 1.54995 * 102.81683 * 37.72684 * 12 11 9 14 14 C 1.53485 * 110.07391 * 95.98237 * 9 7 6 15 15 C 1.52550 * 121.08077 * 335.17784 * 14 9 7 16 16 C 1.52568 * 121.05483 * 263.46205 * 14 9 7 17 17 N 1.46906 * 109.47198 * 295.16265 * 3 2 1 18 18 C 1.46894 * 111.00026 * 297.28284 * 17 3 2 19 19 C 1.50701 * 109.47060 * 179.97438 * 18 17 3 20 20 O 1.21296 * 119.99708 * 359.97438 * 19 18 17 21 21 N 1.34772 * 120.00195 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00116 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99854 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00283 * 179.97438 * 22 21 19 25 25 N 1.31421 * 119.99727 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00398 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46903 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46919 * 120.00273 * 26 24 22 29 29 H 1.48495 * 109.47540 * 240.00559 * 26 24 22 30 30 H 1.09000 * 109.47619 * 295.53989 * 1 2 3 31 31 H 1.09002 * 109.47510 * 55.54175 * 1 2 3 32 32 H 1.09003 * 109.47100 * 175.53960 * 1 2 3 33 33 H 1.09006 * 109.47366 * 240.00173 * 2 1 3 34 34 H 1.09004 * 109.47327 * 119.99854 * 2 1 3 35 35 H 1.08997 * 109.47154 * 54.99460 * 5 3 2 36 36 H 1.08997 * 109.46837 * 295.00099 * 5 3 2 37 37 H 0.96995 * 119.99625 * 359.97438 * 6 5 3 38 38 H 1.08999 * 110.48216 * 335.88824 * 11 9 7 39 39 H 1.09003 * 110.47700 * 98.51279 * 11 9 7 40 40 H 1.08998 * 110.74482 * 279.39881 * 12 11 9 41 41 H 1.09002 * 110.74447 * 156.05900 * 12 11 9 42 42 H 1.08997 * 110.50933 * 203.78047 * 13 12 11 43 43 H 1.09000 * 110.62617 * 81.13390 * 13 12 11 44 44 H 1.09000 * 117.51339 * 357.01996 * 15 14 9 45 45 H 1.09005 * 117.51244 * 142.11248 * 15 14 9 46 46 H 1.08998 * 117.50747 * 217.93665 * 16 14 9 47 47 H 1.09003 * 117.51058 * 3.02178 * 16 14 9 48 48 H 1.00892 * 110.99696 * 173.32368 * 17 3 2 49 49 H 1.09006 * 109.46930 * 299.93104 * 18 17 3 50 50 H 1.09000 * 109.47710 * 59.92901 * 18 17 3 51 51 H 0.96998 * 120.00131 * 359.97438 * 21 19 18 52 52 H 0.96999 * 119.99676 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6076 1.9808 0.8434 5 6 3.5651 1.4443 0.1215 6 7 4.0630 2.8169 0.0017 7 6 5.3862 3.0624 0.0731 8 8 6.1645 2.1475 0.2417 9 6 5.8989 4.4736 -0.0563 10 1 5.1929 5.0767 -0.6272 11 6 7.2791 4.4745 -0.7480 12 6 8.0674 5.5940 -0.0231 13 6 7.6032 5.4440 1.4481 14 6 6.1109 5.0866 1.3347 15 6 5.3345 4.5790 2.5458 16 6 5.0453 5.9703 1.9761 17 7 1.6479 2.1005 -1.2536 18 6 2.2659 1.4395 -2.4107 19 6 1.8412 2.1402 -3.6755 20 8 1.0964 3.0959 -3.6185 21 7 2.2880 1.7043 -4.8700 22 6 1.9012 2.3414 -6.0206 23 1 1.2380 3.1924 -5.9699 24 6 2.3622 1.8924 -7.2521 25 7 3.1688 0.8566 -7.3138 26 14 1.8346 2.7600 -8.8199 27 1 0.9305 3.8882 -8.4811 28 1 3.0334 3.2813 -9.5246 29 1 1.1210 1.8006 -9.7005 30 1 -0.3634 0.4431 0.9272 31 1 -0.3634 0.5815 -0.8473 32 1 -0.3633 -1.0246 -0.0799 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9935 0.8318 -0.6718 36 1 3.8528 1.0367 1.0906 37 1 3.4405 3.5484 -0.1333 38 1 7.7732 3.5122 -0.6146 39 1 7.1743 4.7068 -1.8079 40 1 7.7956 6.5738 -0.4156 41 1 9.1412 5.4271 -0.1081 42 1 7.7313 6.3829 1.9866 43 1 8.1513 4.6427 1.9438 44 1 4.5900 3.8011 2.3767 45 1 5.8643 4.5246 3.4969 46 1 5.3850 6.8309 2.5523 47 1 4.1107 6.1073 1.4322 48 1 1.8769 3.0829 -1.2333 49 1 3.3511 1.4845 -2.3180 50 1 1.9473 0.3978 -2.4472 51 1 2.8833 0.9399 -4.9156 52 1 3.4903 0.5429 -8.1735 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665809088.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:33 Heat of formation + Delta-G solvation = -63.111179 kcal Electronic energy + Delta-G solvation = -30334.744284 eV Core-core repulsion = 26334.075460 eV Total energy + Delta-G solvation = -4000.668824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.69657 -39.01777 -38.07995 -37.15533 -34.48479 -34.01053 -33.82750 -31.95935 -31.19820 -30.00622 -28.27725 -26.56350 -25.89024 -24.27142 -23.45369 -22.76182 -21.35865 -20.65990 -20.29363 -19.19857 -18.92698 -17.92461 -17.21898 -16.78050 -16.27570 -15.96531 -15.39832 -15.20290 -15.05841 -14.70395 -14.37448 -14.30081 -13.98052 -13.83162 -13.59574 -13.45386 -13.25648 -12.91998 -12.72500 -12.65988 -12.15697 -11.96496 -11.83393 -11.75900 -11.67532 -11.48419 -11.31231 -11.27272 -11.10767 -11.05681 -10.87263 -10.79226 -10.58062 -10.52152 -10.35315 -10.27589 -10.23141 -9.59656 -9.52843 -9.16729 -8.49945 -8.11603 -7.97019 -6.42411 -3.83428 2.56907 2.98846 3.15503 3.26200 3.33132 3.52447 3.89325 4.08105 4.10687 4.31466 4.33920 4.54599 4.57027 4.64744 4.77797 4.86962 5.00379 5.03059 5.11162 5.18308 5.22438 5.25506 5.34204 5.37582 5.38320 5.48469 5.50195 5.59276 5.60384 5.64764 5.72194 5.75400 5.79697 5.82827 5.85164 5.88122 5.91425 5.97513 6.00020 6.07809 6.17556 6.20847 6.29540 6.33457 6.53351 7.12641 7.36424 7.53917 7.54475 8.05240 8.15875 8.59849 9.16911 9.53417 10.04344 10.75280 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009384 B = 0.003197 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.126429 B = 8755.710438 C =10751.130474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.077 3.923 4 H 0.088 0.912 5 C 0.079 3.921 6 N -0.729 5.729 7 C 0.526 3.474 8 O -0.536 6.536 9 C -0.078 4.078 10 H 0.093 0.907 11 C -0.113 4.113 12 C -0.120 4.120 13 C -0.086 4.086 14 C -0.116 4.116 15 C -0.171 4.171 16 C -0.165 4.165 17 N -0.652 5.652 18 C 0.043 3.957 19 C 0.441 3.559 20 O -0.585 6.585 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.900 5.900 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.398 0.602 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.345 0.655 49 H 0.047 0.953 50 H 0.089 0.911 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.955 4.988 19.505 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.034 4.034 4 H 0.106 0.894 5 C -0.046 4.046 6 N -0.382 5.382 7 C 0.312 3.688 8 O -0.412 6.412 9 C -0.100 4.100 10 H 0.111 0.889 11 C -0.150 4.150 12 C -0.157 4.157 13 C -0.123 4.123 14 C -0.117 4.117 15 C -0.208 4.208 16 C -0.201 4.201 17 N -0.284 5.284 18 C -0.089 4.089 19 C 0.226 3.774 20 O -0.469 6.469 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.233 0.767 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.164 0.836 49 H 0.064 0.936 50 H 0.107 0.893 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.493 4.522 19.423 20.685 hybrid contribution 0.704 0.422 -0.889 1.210 sum 6.197 4.944 18.533 20.158 Atomic orbital electron populations 1.21654 0.94659 1.01214 1.02667 1.21516 0.97322 0.94345 1.02052 1.21967 0.90623 0.97262 0.93588 0.89369 1.22184 0.96489 0.83399 1.02550 1.46084 1.07633 1.09795 1.74692 1.20466 0.81858 0.91063 0.75406 1.90672 1.55785 1.46298 1.48489 1.21439 0.99657 0.92887 0.95975 0.88889 1.22370 0.92924 1.00640 0.99106 1.22448 0.99784 0.98740 0.94728 1.21870 0.92100 1.01077 0.97286 1.21523 0.94253 1.03619 0.92278 1.22998 1.02955 0.97528 0.97289 1.23064 0.99521 0.94213 1.03347 1.60248 1.61533 1.06689 0.99949 1.21782 0.96948 0.99555 0.90645 1.19794 0.85776 0.87316 0.84471 1.90518 1.39623 1.30087 1.86704 1.41869 1.43354 1.29883 1.04814 1.19740 1.27206 1.12927 0.83009 0.87886 1.25268 0.96597 0.96578 0.99494 1.69627 1.33160 1.24747 1.26634 0.85811 0.78398 0.79209 0.80995 1.19215 1.20765 1.20728 0.93363 0.90719 0.93407 0.91387 0.91837 0.90919 0.91298 0.76733 0.89563 0.90865 0.91206 0.91093 0.91465 0.90970 0.88701 0.88601 0.88433 0.88490 0.83551 0.93556 0.89265 0.77511 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.85 37.15 0.37 -1.25 16 2 C -0.11 -1.22 5.25 -26.73 -0.14 -1.37 16 3 C 0.08 0.85 2.72 -67.70 -0.18 0.66 16 4 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 5 C 0.08 0.92 4.55 -4.04 -0.02 0.90 16 6 N -0.73 -8.32 5.08 -60.29 -0.31 -8.62 16 7 C 0.53 6.91 5.58 -10.99 -0.06 6.85 16 8 O -0.54 -8.94 15.78 5.55 0.09 -8.85 16 9 C -0.08 -0.85 3.16 -90.80 -0.29 -1.14 16 10 H 0.09 0.94 8.13 -51.93 -0.42 0.52 16 11 C -0.11 -1.24 6.33 -24.99 -0.16 -1.40 16 12 C -0.12 -1.04 6.91 -24.66 -0.17 -1.21 16 13 C -0.09 -0.74 6.58 -25.23 -0.17 -0.91 16 14 C -0.12 -1.09 2.26 -154.26 -0.35 -1.44 16 15 C -0.17 -1.54 9.63 -26.91 -0.26 -1.80 16 16 C -0.16 -1.30 10.24 -26.90 -0.28 -1.57 16 17 N -0.65 -9.43 5.36 -107.99 -0.58 -10.01 16 18 C 0.04 0.73 5.38 -4.98 -0.03 0.71 16 19 C 0.44 10.18 7.82 -10.99 -0.09 10.10 16 20 O -0.58 -15.40 15.78 5.54 0.09 -15.31 16 21 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 22 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 25 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 26 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 1.03 7.63 -51.93 -0.40 0.64 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.80 6.23 -51.93 -0.32 0.47 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.98 6.65 -51.93 -0.35 0.64 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.40 3.98 7.18 -40.82 -0.29 3.69 16 38 H 0.09 1.11 6.93 -51.93 -0.36 0.75 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 0.93 7.08 -51.93 -0.37 0.56 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.34 5.05 7.06 -39.30 -0.28 4.77 16 49 H 0.05 0.77 6.37 -51.93 -0.33 0.44 16 50 H 0.09 1.45 6.27 -51.93 -0.33 1.12 16 51 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 52 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 LS Contribution 411.35 15.07 6.20 6.20 Total: -1.00 -32.15 411.35 -9.69 -41.84 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -8.77 Total: 17.71 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.06 Total: -0.82 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.22 Total: -56.76 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.18 Total: -24.17 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.15 -9.69 -41.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665809088.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.267 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds