Wall clock time and date at job start Tue Mar 31 2020 20:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46913 * 2 1 4 4 H 1.08996 * 109.47539 * 55.16451 * 3 2 1 5 5 C 1.53008 * 109.47047 * 175.16774 * 3 2 1 6 6 N 1.46501 * 109.47065 * 175.00109 * 5 3 2 7 7 C 1.34775 * 119.99924 * 180.27728 * 6 5 3 8 8 O 1.21285 * 119.99696 * 359.71592 * 7 6 5 9 9 C 1.50696 * 120.00176 * 179.72520 * 7 6 5 10 10 H 1.09002 * 110.04870 * 334.49939 * 9 7 6 11 11 C 1.54384 * 110.07122 * 212.95312 * 9 7 6 12 12 C 1.54922 * 104.22288 * 217.19761 * 11 9 7 13 13 C 1.54995 * 102.81683 * 37.72684 * 12 11 9 14 14 C 1.53485 * 110.07391 * 95.98237 * 9 7 6 15 15 C 1.52550 * 121.08077 * 335.17784 * 14 9 7 16 16 C 1.52568 * 121.05483 * 263.46205 * 14 9 7 17 17 N 1.46906 * 109.47198 * 295.16265 * 3 2 1 18 18 C 1.46894 * 111.00026 * 297.28284 * 17 3 2 19 19 C 1.50701 * 109.47060 * 179.97438 * 18 17 3 20 20 O 1.21296 * 119.99708 * 359.97438 * 19 18 17 21 21 N 1.34772 * 120.00195 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00116 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99854 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00283 * 179.97438 * 22 21 19 25 25 N 1.31421 * 119.99727 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00398 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46903 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46919 * 120.00273 * 26 24 22 29 29 H 1.48495 * 109.47540 * 240.00559 * 26 24 22 30 30 H 1.09000 * 109.47619 * 295.53989 * 1 2 3 31 31 H 1.09002 * 109.47510 * 55.54175 * 1 2 3 32 32 H 1.09003 * 109.47100 * 175.53960 * 1 2 3 33 33 H 1.09006 * 109.47366 * 240.00173 * 2 1 3 34 34 H 1.09004 * 109.47327 * 119.99854 * 2 1 3 35 35 H 1.08997 * 109.47154 * 54.99460 * 5 3 2 36 36 H 1.08997 * 109.46837 * 295.00099 * 5 3 2 37 37 H 0.96995 * 119.99625 * 359.97438 * 6 5 3 38 38 H 1.08999 * 110.48216 * 335.88824 * 11 9 7 39 39 H 1.09003 * 110.47700 * 98.51279 * 11 9 7 40 40 H 1.08998 * 110.74482 * 279.39881 * 12 11 9 41 41 H 1.09002 * 110.74447 * 156.05900 * 12 11 9 42 42 H 1.08997 * 110.50933 * 203.78047 * 13 12 11 43 43 H 1.09000 * 110.62617 * 81.13390 * 13 12 11 44 44 H 1.09000 * 117.51339 * 357.01996 * 15 14 9 45 45 H 1.09005 * 117.51244 * 142.11248 * 15 14 9 46 46 H 1.08998 * 117.50747 * 217.93665 * 16 14 9 47 47 H 1.09003 * 117.51058 * 3.02178 * 16 14 9 48 48 H 1.00892 * 110.99696 * 173.32368 * 17 3 2 49 49 H 1.09006 * 109.46930 * 299.93104 * 18 17 3 50 50 H 1.09000 * 109.47710 * 59.92901 * 18 17 3 51 51 H 0.96998 * 120.00131 * 359.97438 * 21 19 18 52 52 H 0.96999 * 119.99676 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6076 1.9808 0.8434 5 6 3.5651 1.4443 0.1215 6 7 4.0630 2.8169 0.0017 7 6 5.3862 3.0624 0.0731 8 8 6.1645 2.1475 0.2417 9 6 5.8989 4.4736 -0.0563 10 1 5.1929 5.0767 -0.6272 11 6 7.2791 4.4745 -0.7480 12 6 8.0674 5.5940 -0.0231 13 6 7.6032 5.4440 1.4481 14 6 6.1109 5.0866 1.3347 15 6 5.3345 4.5790 2.5458 16 6 5.0453 5.9703 1.9761 17 7 1.6479 2.1005 -1.2536 18 6 2.2659 1.4395 -2.4107 19 6 1.8412 2.1402 -3.6755 20 8 1.0964 3.0959 -3.6185 21 7 2.2880 1.7043 -4.8700 22 6 1.9012 2.3414 -6.0206 23 1 1.2380 3.1924 -5.9699 24 6 2.3622 1.8924 -7.2521 25 7 3.1688 0.8566 -7.3138 26 14 1.8346 2.7600 -8.8199 27 1 0.9305 3.8882 -8.4811 28 1 3.0334 3.2813 -9.5246 29 1 1.1210 1.8006 -9.7005 30 1 -0.3634 0.4431 0.9272 31 1 -0.3634 0.5815 -0.8473 32 1 -0.3633 -1.0246 -0.0799 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9935 0.8318 -0.6718 36 1 3.8528 1.0367 1.0906 37 1 3.4405 3.5484 -0.1333 38 1 7.7732 3.5122 -0.6146 39 1 7.1743 4.7068 -1.8079 40 1 7.7956 6.5738 -0.4156 41 1 9.1412 5.4271 -0.1081 42 1 7.7313 6.3829 1.9866 43 1 8.1513 4.6427 1.9438 44 1 4.5900 3.8011 2.3767 45 1 5.8643 4.5246 3.4969 46 1 5.3850 6.8309 2.5523 47 1 4.1107 6.1073 1.4322 48 1 1.8769 3.0829 -1.2333 49 1 3.3511 1.4845 -2.3180 50 1 1.9473 0.3978 -2.4472 51 1 2.8833 0.9399 -4.9156 52 1 3.4903 0.5429 -8.1735 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665809088.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:32 Heat of formation + Delta-G solvation = -84.980946 kcal Electronic energy + Delta-G solvation = -30335.692628 eV Core-core repulsion = 26334.075460 eV Total energy + Delta-G solvation = -4001.617168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.63501 -40.40045 -39.32948 -38.39294 -35.98073 -35.28994 -34.84855 -33.35337 -32.99682 -30.90406 -29.36064 -27.98843 -26.73222 -26.03467 -24.38011 -23.41328 -22.25964 -21.77510 -21.37866 -20.62904 -19.93524 -19.79552 -18.41408 -18.04494 -17.19664 -17.03207 -16.87870 -16.41120 -16.09514 -16.00778 -15.80631 -15.52357 -15.32237 -15.13640 -14.68714 -14.52544 -14.32970 -14.01410 -13.75644 -13.71499 -13.49639 -13.46246 -13.14494 -12.90193 -12.70787 -12.64023 -12.41829 -12.40931 -12.28760 -12.11865 -12.01704 -11.86914 -11.80156 -11.59530 -11.54972 -11.50198 -11.19744 -11.15089 -10.46099 -10.35691 -10.19210 -10.02581 -9.38947 -8.47521 -5.96522 1.35792 1.41103 1.54507 1.55421 2.02915 2.05988 2.28217 2.80426 2.93242 3.19630 3.35360 3.49482 3.58196 3.68619 3.78030 3.84307 4.00144 4.05511 4.17763 4.22765 4.27481 4.29511 4.36592 4.42860 4.44367 4.55536 4.61823 4.66531 4.68559 4.74981 4.77001 4.88837 4.93434 4.97338 4.97656 5.03621 5.09645 5.13808 5.18636 5.20827 5.23184 5.32020 5.36931 5.40160 5.42890 5.57758 5.85583 6.06082 6.34864 6.41418 6.57792 7.11345 7.15289 7.54619 8.08923 8.70168 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009384 B = 0.003197 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.126429 B = 8755.710438 C =10751.130474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C 0.087 3.913 4 H 0.111 0.889 5 C 0.085 3.915 6 N -0.721 5.721 7 C 0.523 3.477 8 O -0.577 6.577 9 C -0.079 4.079 10 H 0.101 0.899 11 C -0.118 4.118 12 C -0.114 4.114 13 C -0.084 4.084 14 C -0.128 4.128 15 C -0.178 4.178 16 C -0.147 4.147 17 N -0.657 5.657 18 C 0.063 3.937 19 C 0.440 3.560 20 O -0.618 6.618 21 N -0.575 5.575 22 C -0.331 4.331 23 H 0.081 0.919 24 C -0.014 4.014 25 N -0.922 5.922 26 Si 0.993 3.007 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.406 0.594 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.114 0.886 47 H 0.102 0.898 48 H 0.344 0.656 49 H 0.053 0.947 50 H 0.101 0.899 51 H 0.393 0.607 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.762 5.889 20.652 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.023 4.023 4 H 0.129 0.871 5 C -0.041 4.041 6 N -0.373 5.373 7 C 0.311 3.689 8 O -0.456 6.456 9 C -0.100 4.100 10 H 0.119 0.881 11 C -0.156 4.156 12 C -0.151 4.151 13 C -0.121 4.121 14 C -0.129 4.129 15 C -0.215 4.215 16 C -0.184 4.184 17 N -0.290 5.290 18 C -0.069 4.069 19 C 0.228 3.772 20 O -0.504 6.504 21 N -0.211 5.211 22 C -0.461 4.461 23 H 0.099 0.901 24 C -0.214 4.214 25 N -0.563 5.563 26 Si 0.817 3.183 27 H -0.195 1.195 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.242 0.758 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.120 0.880 46 H 0.132 0.868 47 H 0.121 0.879 48 H 0.164 0.836 49 H 0.071 0.929 50 H 0.119 0.881 51 H 0.227 0.773 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.285 5.418 20.587 21.934 hybrid contribution 0.734 0.108 -1.182 1.396 sum 6.019 5.526 19.405 21.055 Atomic orbital electron populations 1.21602 0.94836 1.01283 1.02084 1.21550 0.97043 0.93968 1.02689 1.22021 0.90213 0.97656 0.92377 0.87082 1.22123 0.96546 0.83207 1.02221 1.46046 1.07392 1.10095 1.73798 1.20901 0.81941 0.91609 0.74499 1.90651 1.56804 1.47632 1.50548 1.21490 0.99528 0.91596 0.97375 0.88063 1.22370 0.93453 1.00394 0.99351 1.22444 0.99865 0.98235 0.94545 1.21871 0.91445 1.01641 0.97189 1.21566 0.95154 1.04736 0.91410 1.23018 1.02871 0.98260 0.97352 1.23151 0.98945 0.93972 1.02284 1.60247 1.61578 1.06757 1.00382 1.21538 0.97255 0.99423 0.88680 1.20791 0.84253 0.86616 0.85580 1.90487 1.40859 1.31602 1.87467 1.41957 1.43925 1.30127 1.05140 1.19711 1.28306 1.13389 0.84683 0.90085 1.26063 0.96219 0.97073 1.02024 1.69695 1.33480 1.25444 1.27697 0.84869 0.78231 0.78115 0.77128 1.19528 1.19679 1.19695 0.91919 0.93632 0.92696 0.92543 0.89458 0.92898 0.90492 0.75752 0.92017 0.91219 0.89991 0.90410 0.89526 0.91996 0.89665 0.88032 0.86791 0.87942 0.83628 0.92880 0.88056 0.77321 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.85 71.98 0.71 -2.20 16 2 C -0.11 -2.23 5.25 30.59 0.16 -2.07 16 3 C 0.09 1.77 2.72 44.92 0.12 1.89 16 4 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 5 C 0.08 1.87 4.55 86.38 0.39 2.27 16 6 N -0.72 -15.93 5.08 -463.05 -2.35 -18.28 16 7 C 0.52 13.75 5.58 87.66 0.49 14.24 16 8 O -0.58 -19.70 15.78 -3.04 -0.05 -19.75 16 9 C -0.08 -1.68 3.16 -10.91 -0.03 -1.72 16 10 H 0.10 1.95 8.13 -2.39 -0.02 1.94 16 11 C -0.12 -2.62 6.33 31.72 0.20 -2.42 16 12 C -0.11 -1.86 6.91 31.93 0.22 -1.64 16 13 C -0.08 -1.33 6.58 31.57 0.21 -1.13 16 14 C -0.13 -2.23 2.26 -52.02 -0.12 -2.34 16 15 C -0.18 -2.94 9.63 30.48 0.29 -2.64 16 16 C -0.15 -1.95 10.24 30.48 0.31 -1.63 16 17 N -0.66 -18.42 5.36 -495.56 -2.65 -21.08 16 18 C 0.06 2.15 5.38 85.56 0.46 2.61 16 19 C 0.44 20.66 7.82 87.66 0.69 21.35 16 20 O -0.62 -33.13 15.78 -3.08 -0.05 -33.18 16 21 N -0.57 -29.68 5.29 -306.99 -1.62 -31.30 16 22 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 23 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 24 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 25 N -0.92 -50.43 13.05 21.66 0.28 -50.15 16 26 Si 0.99 43.05 29.55 68.60 2.03 45.07 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.04 1.21 7.63 -2.39 -0.02 1.19 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.24 6.23 -2.38 -0.01 1.23 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.41 6.65 -2.39 -0.02 1.39 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 37 H 0.41 7.66 7.18 -92.71 -0.67 7.00 16 38 H 0.06 1.68 6.93 -2.39 -0.02 1.66 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.09 1.03 8.11 -2.39 -0.02 1.02 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 1.56 7.08 -2.39 -0.02 1.54 16 45 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 46 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.34 9.77 7.06 -89.70 -0.63 9.13 16 49 H 0.05 1.76 6.37 -2.38 -0.02 1.74 16 50 H 0.10 3.24 6.27 -2.39 -0.01 3.23 16 51 H 0.39 19.72 7.90 -92.71 -0.73 18.98 16 52 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -70.58 411.35 -0.12 -70.70 By element: Atomic # 1 Polarization: 52.79 SS G_CDS: -1.09 Total: 51.71 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.38 Total: 6.26 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -6.35 Total: -120.81 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -0.10 Total: -52.93 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -70.58 -0.12 -70.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665809088.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.284 kcal (2) G-P(sol) polarization free energy of solvation -70.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds