Wall clock time and date at job start Tue Mar 31 2020 20:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99766 * 2 1 4 4 C 1.53004 * 109.47208 * 125.00048 * 3 2 1 5 5 C 1.50700 * 109.47208 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 3 8 8 C 1.46921 * 120.63392 * 359.43977 * 7 5 4 9 9 C 1.52760 * 109.00994 * 233.58899 * 8 7 5 10 10 C 1.53036 * 109.38235 * 305.58739 * 9 8 7 11 11 H 1.09002 * 109.46377 * 301.22063 * 10 9 8 12 12 N 1.46899 * 109.44901 * 181.25571 * 10 9 8 13 13 C 1.46906 * 110.99984 * 84.93755 * 12 10 9 14 14 C 1.50704 * 109.46722 * 179.97438 * 13 12 10 15 15 O 1.21285 * 120.00306 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99470 * 179.97438 * 14 13 12 17 17 C 1.37106 * 119.99971 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99242 * 0.02562 * 17 16 14 19 19 C 1.38945 * 119.99882 * 180.02562 * 17 16 14 20 20 N 1.31407 * 120.00343 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99565 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47080 * 90.00354 * 21 19 17 23 23 H 1.48501 * 109.46983 * 209.99855 * 21 19 17 24 24 H 1.48493 * 109.47427 * 329.99856 * 21 19 17 25 25 C 1.53035 * 109.53955 * 61.24292 * 10 9 8 26 26 H 1.08994 * 109.50277 * 178.68099 * 25 10 9 27 27 C 1.53002 * 109.52332 * 58.60001 * 25 10 9 28 28 C 1.53005 * 109.47149 * 175.14800 * 27 25 10 29 29 C 1.46924 * 120.62813 * 179.72946 * 7 5 4 30 30 H 1.08005 * 119.99698 * 179.97438 * 1 2 3 31 31 H 1.07992 * 120.00250 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.00463 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47500 * 5.00052 * 3 2 1 34 34 H 1.08998 * 109.47585 * 245.00047 * 3 2 1 35 35 H 1.09009 * 109.46730 * 59.99906 * 4 3 2 36 36 H 1.08998 * 109.46846 * 300.00451 * 4 3 2 37 37 H 1.09004 * 109.58490 * 353.42409 * 8 7 5 38 38 H 1.09002 * 109.58518 * 113.84767 * 8 7 5 39 39 H 1.09005 * 109.56000 * 185.55371 * 9 8 7 40 40 H 1.09001 * 109.36136 * 65.50440 * 9 8 7 41 41 H 1.00903 * 110.99855 * 320.98842 * 12 10 9 42 42 H 1.09002 * 109.47198 * 300.00160 * 13 12 10 43 43 H 1.09002 * 109.46686 * 60.00493 * 13 12 10 44 44 H 0.96998 * 120.00220 * 0.02562 * 16 14 13 45 45 H 0.96999 * 120.00507 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.46967 * 295.14166 * 27 25 10 47 47 H 1.08994 * 109.47228 * 55.14831 * 27 25 10 48 48 H 1.08993 * 109.46806 * 300.00126 * 28 27 25 49 49 H 1.09002 * 109.46836 * 59.99615 * 28 27 25 50 50 H 1.08996 * 109.47082 * 179.97438 * 28 27 25 51 51 H 1.09006 * 109.58353 * 246.15683 * 29 7 5 52 52 H 1.09008 * 109.58903 * 6.57099 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7880 2.6386 1.1820 6 8 3.5694 3.4649 0.3216 7 7 4.7086 2.8851 2.1350 8 6 4.9804 1.8963 3.1870 9 6 4.8394 2.5694 4.5510 10 6 5.7394 3.8060 4.6027 11 1 6.7738 3.5100 4.4280 12 7 5.6277 4.4375 5.9243 13 6 6.5412 3.8081 6.8874 14 6 6.3991 4.4812 8.2282 15 8 5.6138 5.3949 8.3679 16 7 7.1439 4.0672 9.2723 17 6 7.0143 4.6792 10.4923 18 1 6.3150 5.4927 10.6167 19 6 7.7826 4.2526 11.5686 20 7 8.6331 3.2624 11.4174 21 14 7.6055 5.0860 13.2310 22 1 6.5583 4.3925 14.0233 23 1 8.8992 5.0219 13.9573 24 1 7.2182 6.5060 13.0342 25 6 5.3047 4.8008 3.5240 26 1 5.9311 5.6913 3.5766 27 6 3.8424 5.1912 3.7478 28 6 3.4445 6.2752 2.7440 29 6 5.4550 4.1506 2.1451 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5400 0.9352 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3585 2.1317 0.0896 34 1 2.6212 1.4027 -0.9313 35 1 3.7400 0.5066 1.0920 36 1 2.4772 1.2356 2.1130 37 1 4.2669 1.0758 3.1104 38 1 5.9947 1.5129 3.0750 39 1 5.1346 1.8716 5.3347 40 1 3.8018 2.8679 4.7011 41 1 4.6759 4.4111 6.2583 42 1 6.2956 2.7505 6.9834 43 1 7.5677 3.9124 6.5359 44 1 7.7717 3.3362 9.1607 45 1 9.1697 2.9648 12.1686 46 1 3.2074 4.3163 3.6084 47 1 3.7191 5.5719 4.7616 48 1 4.0795 7.1500 2.8833 49 1 3.5679 5.8944 1.7302 50 1 2.4026 6.5530 2.9032 51 1 6.5088 3.9549 1.9462 52 1 5.0547 4.8172 1.3811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670569325.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:39 Heat of formation + Delta-G solvation = -86.529192 kcal Electronic energy + Delta-G solvation = -29728.835759 eV Core-core repulsion = 25727.151453 eV Total energy + Delta-G solvation = -4001.684305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58230 -40.18681 -39.28254 -36.41261 -36.20418 -35.74555 -34.96872 -33.25737 -31.99756 -31.76734 -30.28433 -28.33552 -26.61188 -25.53011 -24.61023 -24.17922 -23.23155 -21.10082 -20.87247 -20.61446 -19.92080 -19.25996 -18.26619 -17.59079 -17.11075 -16.75445 -16.72041 -16.31733 -16.14259 -16.06834 -15.65001 -15.51292 -15.39679 -15.12718 -14.69101 -14.43761 -14.20742 -14.08939 -13.71785 -13.54156 -13.49343 -13.35903 -13.21626 -13.14003 -12.89647 -12.82739 -12.69101 -12.43856 -12.39762 -12.18715 -12.12210 -11.99321 -11.87422 -11.59658 -11.50105 -11.48235 -11.17672 -10.75473 -10.31345 -10.20125 -10.00001 -9.61936 -9.20266 -8.45927 -5.94219 1.38112 1.40372 1.42140 1.54514 1.67439 2.07596 2.08372 2.29692 2.94232 3.21697 3.51795 3.53571 3.72726 3.87898 3.98757 4.02147 4.08798 4.14606 4.18982 4.30802 4.34302 4.40131 4.46514 4.48073 4.51416 4.58700 4.61351 4.65155 4.69543 4.73728 4.76812 4.84184 4.95110 4.95491 4.99609 5.07561 5.09385 5.21414 5.22888 5.28342 5.37026 5.41903 5.44886 5.62972 5.77334 5.92193 5.93717 6.17119 6.42925 6.47284 6.61955 7.14250 7.22081 7.58505 8.14276 8.71311 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.002033 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.099502 B =13771.740556 C =14349.665803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C -0.077 4.077 4 C -0.129 4.129 5 C 0.509 3.491 6 O -0.585 6.585 7 N -0.605 5.605 8 C 0.112 3.888 9 C -0.166 4.166 10 C 0.096 3.904 11 H 0.090 0.910 12 N -0.676 5.676 13 C 0.067 3.933 14 C 0.437 3.563 15 O -0.625 6.625 16 N -0.574 5.574 17 C -0.333 4.333 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.271 1.271 23 H -0.271 1.271 24 H -0.275 1.275 25 C -0.082 4.082 26 H 0.079 0.921 27 C -0.108 4.108 28 C -0.148 4.148 29 C 0.116 3.884 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.127 0.873 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.342 0.658 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.052 0.948 50 H 0.048 0.952 51 H 0.080 0.920 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.904 -10.793 -21.740 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.174 4.174 3 C -0.115 4.115 4 C -0.169 4.169 5 C 0.299 3.701 6 O -0.466 6.466 7 N -0.338 5.338 8 C -0.011 4.011 9 C -0.205 4.205 10 C -0.014 4.014 11 H 0.108 0.892 12 N -0.307 5.307 13 C -0.065 4.065 14 C 0.224 3.776 15 O -0.512 6.512 16 N -0.211 5.211 17 C -0.463 4.463 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.560 5.560 21 Si 0.815 3.185 22 H -0.196 1.196 23 H -0.196 1.196 24 H -0.200 1.200 25 C -0.102 4.102 26 H 0.097 0.903 27 C -0.146 4.146 28 C -0.205 4.205 29 C -0.007 4.007 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.145 0.855 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.162 0.838 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.098 0.902 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.949 -9.327 -22.089 25.261 hybrid contribution -0.162 -0.399 1.220 1.294 sum -8.111 -9.726 -20.869 24.411 Atomic orbital electron populations 1.24036 0.96246 1.02335 1.00894 1.23014 0.96091 0.98239 1.00077 1.20442 0.97598 0.95575 0.97894 1.21687 0.99106 0.94723 1.01347 1.21257 0.79020 0.89561 0.80283 1.90673 1.66989 1.49867 1.39048 1.48187 1.38969 1.18619 1.28001 1.21800 1.03847 0.90686 0.84726 1.22613 1.01018 0.98464 0.98449 1.21628 0.99979 0.91963 0.87839 0.89181 1.60156 1.11161 1.57342 1.02037 1.21556 0.99435 0.96477 0.89025 1.20988 0.83398 0.86186 0.86991 1.90496 1.41480 1.33845 1.85348 1.41932 1.37314 1.33136 1.08716 1.19638 1.22659 1.16483 0.87489 0.90519 1.25999 0.95289 0.97083 1.02867 1.69658 1.24887 1.27504 1.33953 0.84959 0.78029 0.78298 0.77244 1.19599 1.19553 1.20003 1.21441 0.96996 0.98434 0.93322 0.90297 1.21416 0.95853 0.98325 0.99006 1.21762 1.00821 0.98772 0.99181 1.21662 0.96479 0.85504 0.97064 0.87180 0.89173 0.85528 0.92727 0.91380 0.86123 0.87417 0.87210 0.89217 0.89645 0.91638 0.83828 0.91155 0.87891 0.76919 0.91319 0.92537 0.92789 0.92813 0.92942 0.93274 0.90171 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.26 14.32 67.78 0.97 -1.29 16 2 C -0.16 -1.73 9.52 25.65 0.24 -1.49 16 3 C -0.08 -1.11 4.95 29.85 0.15 -0.96 16 4 C -0.13 -1.50 4.03 29.85 0.12 -1.38 16 5 C 0.51 9.59 7.70 87.66 0.67 10.26 16 6 O -0.59 -15.96 15.39 -3.04 -0.05 -16.01 16 7 N -0.61 -9.67 2.34 -819.72 -1.92 -11.59 16 8 C 0.11 1.19 6.31 86.22 0.54 1.74 16 9 C -0.17 -2.51 4.97 30.53 0.15 -2.35 16 10 C 0.10 1.91 2.13 44.94 0.10 2.01 16 11 H 0.09 1.63 7.80 -2.39 -0.02 1.61 16 12 N -0.68 -19.55 5.42 -495.43 -2.69 -22.23 16 13 C 0.07 2.12 5.96 85.56 0.51 2.63 16 14 C 0.44 20.18 7.82 87.66 0.69 20.87 16 15 O -0.63 -34.27 15.78 -3.05 -0.05 -34.31 16 16 N -0.57 -28.78 5.29 -306.99 -1.62 -30.40 16 17 C -0.33 -18.75 9.68 84.04 0.81 -17.93 16 18 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 19 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 20 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 21 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 25 C -0.08 -1.69 2.38 -10.72 -0.03 -1.72 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 27 C -0.11 -2.48 4.67 30.60 0.14 -2.34 16 28 C -0.15 -3.39 9.68 71.98 0.70 -2.70 16 29 C 0.12 2.13 5.70 86.36 0.49 2.63 16 30 H 0.11 0.95 8.06 -2.91 -0.02 0.93 16 31 H 0.09 1.12 7.84 -2.91 -0.02 1.10 16 32 H 0.13 0.95 8.06 -2.91 -0.02 0.93 16 33 H 0.05 0.99 7.75 -2.39 -0.02 0.97 16 34 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 35 H 0.12 0.78 7.95 -2.38 -0.02 0.76 16 36 H 0.11 0.99 7.68 -2.39 -0.02 0.97 16 37 H 0.11 0.67 5.94 -2.38 -0.01 0.66 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 1.21 7.42 -2.38 -0.02 1.19 16 40 H 0.06 1.14 6.45 -2.39 -0.02 1.12 16 41 H 0.34 10.80 7.34 -89.69 -0.66 10.14 16 42 H 0.07 1.85 7.41 -2.39 -0.02 1.84 16 43 H 0.10 2.92 8.06 -2.39 -0.02 2.90 16 44 H 0.40 18.74 7.90 -92.71 -0.73 18.01 16 45 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 46 H 0.06 1.27 6.13 -2.39 -0.01 1.25 16 47 H 0.05 1.45 7.01 -2.39 -0.02 1.44 16 48 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.05 1.26 6.46 -2.39 -0.02 1.25 16 50 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 52 H 0.08 1.81 5.20 -2.38 -0.01 1.79 16 Total: -1.00 -71.46 408.18 2.26 -69.20 By element: Atomic # 1 Polarization: 41.92 SS G_CDS: -0.46 Total: 41.45 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 6.73 Total: 7.76 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -5.94 Total: -112.76 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -0.09 Total: -50.32 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -71.46 2.26 -69.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670569325.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.326 kcal (2) G-P(sol) polarization free energy of solvation -71.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds