Wall clock time and date at job start Tue Mar 31 2020 20:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99888 * 2 1 4 4 C 1.53005 * 109.46861 * 125.00333 * 3 2 1 5 5 C 1.50700 * 109.47204 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99520 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00046 * 179.97438 * 5 4 3 8 8 C 1.46925 * 120.63095 * 0.02562 * 7 5 4 9 9 C 1.53193 * 108.77727 * 126.41419 * 8 7 5 10 10 C 1.53040 * 109.31734 * 54.62973 * 9 8 7 11 11 H 1.09006 * 109.45772 * 58.64476 * 10 9 8 12 12 N 1.46896 * 109.46097 * 178.61452 * 10 9 8 13 13 C 1.46899 * 111.00338 * 275.02728 * 12 10 9 14 14 C 1.50698 * 109.46987 * 179.97438 * 13 12 10 15 15 O 1.21293 * 120.00006 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99538 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99773 * 179.72591 * 16 14 13 18 18 H 1.08002 * 119.99671 * 0.27660 * 17 16 14 19 19 C 1.38950 * 120.00030 * 180.27703 * 17 16 14 20 20 N 1.31414 * 119.99926 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99969 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47234 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47403 * 120.00325 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00122 * 21 19 17 25 25 C 1.53039 * 109.52656 * 298.63319 * 10 9 8 26 26 H 1.09004 * 109.49548 * 181.31806 * 25 10 9 27 27 C 1.52997 * 109.49726 * 301.41633 * 25 10 9 28 28 C 1.53001 * 109.46960 * 185.00079 * 27 25 10 29 29 C 1.46929 * 120.63156 * 180.02562 * 7 5 4 30 30 H 1.08004 * 119.99725 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.00139 * 359.97438 * 1 2 3 32 32 H 1.08003 * 119.99803 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47518 * 5.00964 * 3 2 1 34 34 H 1.09003 * 109.47418 * 245.00062 * 3 2 1 35 35 H 1.09005 * 109.46925 * 60.00086 * 4 3 2 36 36 H 1.09004 * 109.47385 * 300.00218 * 4 3 2 37 37 H 1.08991 * 109.58872 * 6.62184 * 8 7 5 38 38 H 1.08999 * 109.58438 * 246.19458 * 8 7 5 39 39 H 1.09003 * 109.49218 * 294.68190 * 9 8 7 40 40 H 1.08998 * 109.49891 * 174.58642 * 9 8 7 41 41 H 1.00898 * 110.99977 * 38.98970 * 12 10 9 42 42 H 1.09003 * 109.46477 * 60.00383 * 13 12 10 43 43 H 1.08993 * 109.47002 * 300.00709 * 13 12 10 44 44 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 45 45 H 0.96999 * 119.99863 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.47075 * 305.00221 * 27 25 10 47 47 H 1.09002 * 109.47166 * 65.00604 * 27 25 10 48 48 H 1.09004 * 109.47006 * 180.02562 * 28 27 25 49 49 H 1.09000 * 109.47343 * 299.99978 * 28 27 25 50 50 H 1.09001 * 109.47476 * 60.00444 * 28 27 25 51 51 H 1.09004 * 109.58490 * 353.38288 * 29 7 5 52 52 H 1.09010 * 109.58496 * 113.65942 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7890 2.6378 1.1813 6 8 3.5704 3.4642 0.3210 7 7 4.7054 2.8868 2.1376 8 6 4.9809 1.8957 3.1867 9 6 6.4863 1.6136 3.2156 10 6 7.2453 2.9321 3.3817 11 1 6.9278 3.4203 4.3031 12 7 8.6879 2.6619 3.4431 13 6 9.1024 2.3231 4.8111 14 6 10.5847 2.0526 4.8343 15 8 11.2323 2.1345 3.8120 16 7 11.1910 1.7206 5.9914 17 6 12.5386 1.4690 6.0115 18 1 13.1150 1.5412 5.1011 19 6 13.1626 1.1212 7.2033 20 7 12.4611 1.0329 8.3110 21 14 14.9988 0.7791 7.2309 22 1 15.5540 0.9456 5.8637 23 1 15.6659 1.7311 8.1549 24 1 15.2364 -0.6110 7.6962 25 6 6.9480 3.8469 2.1914 26 1 7.5072 4.7764 2.2984 27 6 7.3612 3.1481 0.8946 28 6 7.1804 4.1088 -0.2824 29 6 5.4481 4.1545 2.1509 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0897 34 1 2.6213 1.4027 -0.9314 35 1 3.7400 0.5064 1.0920 36 1 2.4773 1.2354 2.1131 37 1 4.4405 0.9743 2.9699 38 1 4.6642 2.2887 4.1528 39 1 6.7850 1.1370 2.2819 40 1 6.7168 0.9533 4.0517 41 1 8.9471 1.9328 2.7956 42 1 8.5660 1.4344 5.1435 43 1 8.8740 3.1555 5.4765 44 1 10.6732 1.6555 6.8090 45 1 12.8968 0.7905 9.1430 46 1 8.4069 2.8476 0.9610 47 1 6.7387 2.2663 0.7427 48 1 7.4743 3.6107 -1.2064 49 1 6.1347 4.4092 -0.3488 50 1 7.8029 4.9906 -0.1307 51 1 5.2160 4.7234 1.2506 52 1 5.1677 4.7330 3.0312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670569326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:42 Heat of formation + Delta-G solvation = -86.548574 kcal Electronic energy + Delta-G solvation = -29701.795632 eV Core-core repulsion = 25700.110486 eV Total energy + Delta-G solvation = -4001.685146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57617 -40.18584 -39.27771 -36.41272 -36.20344 -35.74482 -34.95984 -33.25656 -31.98193 -31.76262 -30.27611 -28.33334 -26.61040 -25.52815 -24.60844 -24.18511 -23.22819 -21.10083 -20.87174 -20.61027 -19.92112 -19.25802 -18.26418 -17.61523 -17.08906 -16.75098 -16.65179 -16.32258 -16.24839 -16.09704 -15.63269 -15.45626 -15.36046 -15.11003 -14.74063 -14.42624 -14.18596 -14.10522 -13.69596 -13.57263 -13.49309 -13.38360 -13.19468 -13.09234 -12.89940 -12.83733 -12.69129 -12.43786 -12.38681 -12.21930 -12.11625 -11.97000 -11.87276 -11.58889 -11.50553 -11.48056 -11.17239 -10.75735 -10.31257 -10.20022 -9.99852 -9.62029 -9.19992 -8.46199 -5.94394 1.36716 1.40620 1.42278 1.56000 1.67302 2.07526 2.08280 2.29679 2.94252 3.21526 3.51825 3.53717 3.73149 3.88324 3.98430 4.02906 4.08650 4.14535 4.18441 4.31250 4.34521 4.40267 4.46679 4.47923 4.51438 4.58884 4.61250 4.64787 4.70389 4.74360 4.76523 4.84984 4.93947 4.95907 4.99973 5.07956 5.09729 5.21628 5.23204 5.28760 5.37443 5.42138 5.45456 5.62980 5.77924 5.92017 5.93832 6.17249 6.43242 6.47360 6.61873 7.14309 7.21985 7.58513 8.14249 8.71313 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.002015 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.195201 B =13892.083666 C =14600.308374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C -0.077 4.077 4 C -0.129 4.129 5 C 0.509 3.491 6 O -0.585 6.585 7 N -0.606 5.606 8 C 0.112 3.888 9 C -0.165 4.165 10 C 0.095 3.905 11 H 0.089 0.911 12 N -0.676 5.676 13 C 0.067 3.933 14 C 0.437 3.563 15 O -0.625 6.625 16 N -0.574 5.574 17 C -0.333 4.333 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.275 1.275 23 H -0.272 1.272 24 H -0.270 1.270 25 C -0.082 4.082 26 H 0.078 0.922 27 C -0.108 4.108 28 C -0.148 4.148 29 C 0.116 3.884 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.343 0.657 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.049 0.951 49 H 0.051 0.949 50 H 0.052 0.948 51 H 0.081 0.919 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.973 -1.464 -8.787 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.177 4.177 3 C -0.115 4.115 4 C -0.169 4.169 5 C 0.299 3.701 6 O -0.466 6.466 7 N -0.338 5.338 8 C -0.011 4.011 9 C -0.205 4.205 10 C -0.014 4.014 11 H 0.107 0.893 12 N -0.307 5.307 13 C -0.065 4.065 14 C 0.225 3.775 15 O -0.511 6.511 16 N -0.211 5.211 17 C -0.462 4.462 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.560 5.560 21 Si 0.815 3.185 22 H -0.200 1.200 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.101 4.101 26 H 0.097 0.903 27 C -0.146 4.146 28 C -0.205 4.205 29 C -0.007 4.007 30 H 0.128 0.872 31 H 0.112 0.888 32 H 0.140 0.860 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.162 0.838 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.099 0.901 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.406 -0.353 -9.637 25.315 hybrid contribution 0.718 -0.907 0.532 1.273 sum -22.688 -1.260 -9.105 24.480 Atomic orbital electron populations 1.24036 0.96065 1.02440 1.00609 1.22996 0.96197 0.98134 1.00344 1.20437 0.97605 0.95698 0.97731 1.21687 0.98974 0.94486 1.01719 1.21254 0.79456 0.89498 0.79913 1.90672 1.67254 1.49934 1.38715 1.48188 1.38762 1.18534 1.28306 1.21890 0.95210 0.92802 0.91165 1.22684 0.96166 0.98390 1.03238 1.21628 0.85555 0.95460 0.98783 0.89251 1.60147 1.15083 1.50087 1.05364 1.21551 0.90547 1.01792 0.92597 1.20990 0.91139 0.81989 0.83424 1.90499 1.67933 1.58173 1.34539 1.41936 1.08577 1.61170 1.09435 1.19683 0.85144 1.45481 0.95928 0.90507 1.25998 1.04474 0.96610 0.94134 1.69669 1.38144 1.48397 0.99835 0.84900 0.77173 0.78275 0.78165 1.19970 1.19695 1.19540 1.21430 0.94887 0.99364 0.94467 0.90321 1.21415 1.00676 0.98355 0.94141 1.21763 1.01294 0.99558 0.97925 1.21653 0.90010 0.85860 1.03184 0.87219 0.88830 0.85961 0.92220 0.91869 0.86913 0.86676 0.87178 0.89319 0.91497 0.89701 0.83802 0.91170 0.87907 0.76925 0.91329 0.92768 0.92439 0.93235 0.92958 0.92857 0.90098 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.08 14.32 67.78 0.97 -1.11 16 2 C -0.16 -1.77 9.52 25.65 0.24 -1.53 16 3 C -0.08 -1.11 4.95 29.85 0.15 -0.96 16 4 C -0.13 -1.51 4.03 29.85 0.12 -1.39 16 5 C 0.51 9.60 7.70 87.66 0.67 10.28 16 6 O -0.59 -15.97 15.39 -3.04 -0.05 -16.02 16 7 N -0.61 -9.69 2.33 -818.95 -1.91 -11.60 16 8 C 0.11 1.20 6.34 86.36 0.55 1.74 16 9 C -0.17 -2.47 4.99 30.67 0.15 -2.32 16 10 C 0.10 1.90 2.13 44.94 0.10 2.00 16 11 H 0.09 1.62 7.80 -2.38 -0.02 1.61 16 12 N -0.68 -19.47 5.42 -495.45 -2.69 -22.15 16 13 C 0.07 2.12 5.97 85.56 0.51 2.63 16 14 C 0.44 20.16 7.82 87.66 0.69 20.85 16 15 O -0.62 -34.20 15.78 -3.07 -0.05 -34.25 16 16 N -0.57 -28.77 5.29 -306.98 -1.62 -30.39 16 17 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 18 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 19 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 20 N -0.92 -48.83 13.05 21.66 0.28 -48.54 16 21 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 C -0.08 -1.68 2.38 -10.73 -0.03 -1.70 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 C -0.11 -2.46 4.67 30.59 0.14 -2.31 16 28 C -0.15 -3.37 9.68 71.98 0.70 -2.67 16 29 C 0.12 2.14 5.70 86.35 0.49 2.63 16 30 H 0.11 0.88 8.06 -2.91 -0.02 0.86 16 31 H 0.09 1.03 7.84 -2.91 -0.02 1.01 16 32 H 0.12 1.04 8.06 -2.91 -0.02 1.01 16 33 H 0.06 1.02 7.75 -2.39 -0.02 1.00 16 34 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 35 H 0.11 0.93 7.69 -2.38 -0.02 0.91 16 36 H 0.12 0.87 7.94 -2.39 -0.02 0.85 16 37 H 0.11 0.67 5.93 -2.39 -0.01 0.66 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 39 H 0.07 1.14 6.45 -2.39 -0.02 1.12 16 40 H 0.08 1.19 7.42 -2.39 -0.02 1.17 16 41 H 0.34 10.75 7.33 -89.70 -0.66 10.09 16 42 H 0.07 1.85 7.41 -2.39 -0.02 1.83 16 43 H 0.10 2.92 8.05 -2.39 -0.02 2.90 16 44 H 0.40 18.74 7.90 -92.71 -0.73 18.00 16 45 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 46 H 0.05 1.44 7.00 -2.39 -0.02 1.43 16 47 H 0.06 1.27 6.13 -2.39 -0.01 1.25 16 48 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.05 1.25 6.46 -2.39 -0.02 1.24 16 50 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.08 1.81 5.21 -2.39 -0.01 1.79 16 52 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -71.32 408.21 2.27 -69.05 By element: Atomic # 1 Polarization: 41.69 SS G_CDS: -0.46 Total: 41.23 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 6.74 Total: 8.03 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -5.93 Total: -112.69 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.10 Total: -50.27 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -71.32 2.27 -69.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670569326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.499 kcal (2) G-P(sol) polarization free energy of solvation -71.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds