Wall clock time and date at job start Tue Mar 31 2020 20:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08999 * 109.50231 * 304.93119 * 3 2 1 5 5 C 1.53195 * 109.49786 * 65.00162 * 3 2 1 6 6 N 1.46925 * 108.77471 * 174.58232 * 5 3 2 7 7 C 1.34780 * 120.63129 * 126.37081 * 6 5 3 8 8 O 1.21280 * 119.99663 * 359.97438 * 7 6 5 9 9 C 1.50691 * 120.00146 * 179.97438 * 7 6 5 10 10 N 1.46498 * 109.47267 * 179.97438 * 9 7 6 11 11 C 1.46502 * 120.00112 * 269.99922 * 10 9 7 12 12 C 1.34775 * 120.00001 * 90.00164 * 10 9 7 13 13 O 1.21286 * 119.99915 * 0.02562 * 12 10 9 14 14 C 1.50701 * 120.00070 * 180.02562 * 12 10 9 15 15 C 1.53000 * 117.49889 * 248.62055 * 14 12 10 16 16 C 1.53000 * 60.00009 * 252.50960 * 15 14 12 17 17 C 1.46930 * 118.74128 * 306.39082 * 6 5 3 18 18 C 1.53195 * 108.77326 * 53.60703 * 17 6 5 19 19 C 1.53035 * 109.31405 * 305.36811 * 18 17 6 20 20 H 1.08999 * 109.46009 * 181.38627 * 19 18 17 21 21 N 1.46501 * 109.46048 * 301.34366 * 19 18 17 22 22 C 1.36938 * 119.99906 * 275.07070 * 21 19 18 23 23 H 1.07996 * 120.00454 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99916 * 179.97438 * 22 21 19 25 25 N 1.31625 * 119.99921 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00045 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47268 * 60.00051 * 26 24 22 28 28 H 1.48501 * 109.47340 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47175 * 299.99994 * 26 24 22 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 33 33 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 34 34 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 35 35 H 1.08999 * 109.58411 * 294.36940 * 5 3 2 36 36 H 1.09002 * 109.58865 * 54.65312 * 5 3 2 37 37 H 1.09002 * 109.47344 * 300.00286 * 9 7 6 38 38 H 1.09003 * 109.47466 * 60.00145 * 9 7 6 39 39 H 1.09008 * 109.46974 * 90.00096 * 11 10 9 40 40 H 1.08999 * 109.47289 * 209.99388 * 11 10 9 41 41 H 1.08997 * 109.47541 * 330.00177 * 11 10 9 42 42 H 1.08999 * 115.54891 * 34.33198 * 14 12 10 43 43 H 1.08996 * 117.50107 * 0.02562 * 15 14 12 44 44 H 1.08997 * 117.49691 * 145.02325 * 15 14 12 45 45 H 1.08995 * 117.50497 * 252.51014 * 16 15 14 46 46 H 1.09004 * 117.49769 * 107.48893 * 16 15 14 47 47 H 1.08995 * 109.58617 * 173.39733 * 17 6 5 48 48 H 1.09002 * 109.58318 * 293.82502 * 17 6 5 49 49 H 1.08997 * 109.49596 * 65.32094 * 18 17 6 50 50 H 1.08999 * 109.49583 * 185.41557 * 18 17 6 51 51 H 0.97000 * 120.00167 * 95.06700 * 21 19 18 52 52 H 0.97000 * 119.99537 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9817 -0.8424 5 6 1.6350 2.1280 1.3088 6 7 2.2414 3.4656 1.3494 7 6 1.4813 4.5580 1.5629 8 8 0.2848 4.4422 1.7234 9 6 2.1183 5.9231 1.6024 10 7 1.0882 6.9358 1.8464 11 6 0.3943 7.5617 0.7180 12 6 0.7788 7.2917 3.1089 13 8 1.3535 6.7739 4.0431 14 6 -0.2813 8.3330 3.3600 15 6 0.1719 9.6804 3.9256 16 6 -0.5869 8.6935 4.8152 17 6 3.6921 3.5900 1.1523 18 6 4.0740 2.8881 -0.1547 19 6 3.5655 1.4450 -0.1217 20 1 3.8574 0.9360 -1.0402 21 7 4.1479 0.7486 1.0281 22 6 5.3861 0.1728 0.9245 23 1 5.9334 0.2325 -0.0046 24 6 5.9382 -0.4867 2.0141 25 7 5.2714 -0.5590 3.1467 26 14 7.6274 -1.2715 1.8731 27 1 8.6310 -0.2294 1.5383 28 1 7.9868 -1.9084 3.1655 29 1 7.6072 -2.3011 0.8032 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 0.5496 2.2173 1.3538 36 1 1.9885 1.5384 2.1547 37 1 2.8576 5.9562 2.4026 38 1 2.6061 6.1242 0.6485 39 1 -0.4940 6.9805 0.4702 40 1 0.1010 8.5758 0.9891 41 1 1.0596 7.5942 -0.1448 42 1 -1.1129 8.3366 2.6553 43 1 1.2368 9.8139 4.1158 44 1 -0.3615 10.5709 3.5931 45 1 -1.6193 8.9347 5.0678 46 1 -0.0211 8.1775 5.5910 47 1 3.9639 4.6439 1.0941 48 1 4.2155 3.1208 1.9854 49 1 3.6219 3.4139 -0.9956 50 1 5.1584 2.8893 -0.2649 51 1 3.6566 0.6953 1.8627 52 1 5.6574 -1.0195 3.9081 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670582497.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:24 Heat of formation + Delta-G solvation = -29.099694 kcal Electronic energy + Delta-G solvation = -30842.737824 eV Core-core repulsion = 26843.543849 eV Total energy + Delta-G solvation = -3999.193975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.57400 -39.66643 -37.84153 -36.37250 -35.43948 -34.42645 -33.73610 -31.68928 -29.89645 -29.32253 -28.11612 -26.77616 -25.08855 -23.92260 -23.52404 -23.27312 -22.68225 -20.80163 -19.89668 -19.00396 -18.24248 -17.64058 -17.41059 -17.04531 -16.40200 -15.60795 -15.34302 -15.15811 -14.73372 -14.58441 -14.28248 -14.06114 -13.95426 -13.45636 -13.28787 -13.21006 -13.14090 -12.94881 -12.83219 -12.57869 -12.44099 -12.22300 -11.95476 -11.80145 -11.71930 -11.36449 -11.08749 -10.96439 -10.87986 -10.80431 -10.75470 -10.71089 -10.29888 -10.26456 -10.19094 -9.94172 -9.84267 -9.77426 -9.54693 -8.92706 -8.71683 -8.19714 -6.97657 -5.78286 -3.07168 2.31796 2.70213 2.83923 3.37412 3.41921 3.47018 3.48272 3.64235 4.25955 4.52190 4.57478 4.62023 4.67557 4.80839 4.89057 5.02603 5.12634 5.23265 5.28796 5.29985 5.32149 5.35088 5.47636 5.49734 5.53393 5.55231 5.59306 5.67398 5.70342 5.79940 5.82950 5.88473 5.91829 6.09802 6.15826 6.16410 6.21741 6.36717 6.39113 6.41380 6.57439 6.64177 6.71188 6.77321 6.94582 7.02147 7.16966 7.67892 7.72763 8.05839 8.39931 8.41593 9.51406 10.08224 10.43096 11.43902 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.002892 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.542878 B = 9681.169239 C =10610.524604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.120 3.880 6 N -0.599 5.599 7 C 0.498 3.502 8 O -0.546 6.546 9 C 0.098 3.902 10 N -0.597 5.597 11 C 0.081 3.919 12 C 0.549 3.451 13 O -0.534 6.534 14 C -0.191 4.191 15 C -0.154 4.154 16 C -0.148 4.148 17 C 0.112 3.888 18 C -0.149 4.149 19 C 0.179 3.821 20 H 0.051 0.949 21 N -0.718 5.718 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.048 0.952 50 H 0.075 0.925 51 H 0.384 0.616 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.855 18.690 -6.398 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.003 4.003 6 N -0.332 5.332 7 C 0.284 3.716 8 O -0.424 6.424 9 C -0.028 4.028 10 N -0.330 5.330 11 C -0.062 4.062 12 C 0.337 3.663 13 O -0.410 6.410 14 C -0.212 4.212 15 C -0.191 4.191 16 C -0.185 4.185 17 C -0.010 4.010 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.068 0.932 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.143 0.857 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.127 0.873 47 H 0.085 0.915 48 H 0.105 0.895 49 H 0.066 0.934 50 H 0.093 0.907 51 H 0.219 0.781 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.007 18.268 -5.846 22.115 hybrid contribution 0.916 -0.616 -0.011 1.104 sum -10.092 17.652 -5.856 21.159 Atomic orbital electron populations 1.21851 0.96857 1.01013 1.01301 1.21419 0.94243 0.95783 1.03364 1.21738 0.97355 0.96096 0.96978 0.91698 1.21660 0.98695 0.81662 0.98241 1.48128 1.08618 1.06507 1.69958 1.20977 0.87352 0.86501 0.76746 1.90643 1.14933 1.86516 1.50322 1.21384 0.91024 0.85999 1.04439 1.47284 1.39596 1.39622 1.06454 1.21839 0.97797 0.97904 0.88628 1.19651 0.82462 0.82117 0.82062 1.90718 1.52812 1.55137 1.42341 1.22177 1.01063 0.97505 1.00449 1.22940 1.01691 0.91546 1.02918 1.22966 1.01792 1.01594 0.92171 1.21757 0.79198 0.99803 1.00244 1.22530 1.01831 0.99384 0.95316 1.20213 0.89752 0.90614 0.92609 0.93151 1.42478 1.19022 1.64007 1.10585 1.19156 0.93594 1.27225 0.97050 0.91330 1.24713 0.98516 1.01456 0.96028 1.69643 1.38102 1.47957 1.02233 0.86318 0.84384 0.79173 0.76554 1.21374 1.21819 1.21398 0.93167 0.92812 0.93444 0.90478 0.92041 0.89764 0.90813 0.86909 0.87565 0.92096 0.90625 0.90997 0.85748 0.88251 0.87810 0.87889 0.87348 0.91467 0.89490 0.93356 0.90671 0.78060 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 37.16 0.36 -1.76 16 2 C -0.11 -1.78 5.19 -26.73 -0.14 -1.92 16 3 C -0.10 -1.66 2.14 -90.50 -0.19 -1.85 16 4 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 5 C 0.12 2.09 5.02 -3.71 -0.02 2.07 16 6 N -0.60 -9.87 2.97 -172.77 -0.51 -10.38 16 7 C 0.50 8.21 7.77 -10.99 -0.09 8.12 16 8 O -0.55 -10.66 15.84 5.56 0.09 -10.57 16 9 C 0.10 1.25 4.28 -5.20 -0.02 1.23 16 10 N -0.60 -7.27 2.36 -182.95 -0.43 -7.70 16 11 C 0.08 0.66 10.05 59.85 0.60 1.26 16 12 C 0.55 7.63 7.46 -10.99 -0.08 7.55 16 13 O -0.53 -9.64 15.84 5.55 0.09 -9.55 16 14 C -0.19 -1.88 4.80 -91.77 -0.44 -2.32 16 15 C -0.15 -1.17 10.23 -26.73 -0.27 -1.44 16 16 C -0.15 -1.36 10.04 -26.73 -0.27 -1.62 16 17 C 0.11 1.76 6.08 -3.71 -0.02 1.74 16 18 C -0.15 -2.37 5.78 -26.61 -0.15 -2.52 16 19 C 0.18 3.26 2.53 -67.89 -0.17 3.09 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -16.42 3.72 -53.39 -0.20 -16.62 16 22 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -27.25 13.06 55.49 0.72 -26.52 16 26 Si 0.90 21.81 29.55 -169.99 -5.02 16.79 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.77 6.70 -51.93 -0.35 0.42 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.45 7.69 -51.93 -0.40 1.06 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.50 5.72 -51.93 -0.30 1.20 16 36 H 0.07 1.46 6.65 -51.93 -0.35 1.11 16 37 H 0.11 1.54 7.22 -51.93 -0.38 1.16 16 38 H 0.11 1.00 7.44 -51.93 -0.39 0.61 16 39 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 40 H 0.08 0.44 6.64 -51.93 -0.34 0.09 16 41 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 42 H 0.12 0.99 7.26 -51.93 -0.38 0.61 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.11 1.21 7.67 -51.93 -0.40 0.81 16 47 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 48 H 0.09 1.65 7.74 -51.93 -0.40 1.25 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 51 H 0.38 9.54 5.94 -40.82 -0.24 9.30 16 52 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 407.28 15.07 6.14 6.14 Total: -1.00 -33.51 407.28 -9.11 -42.62 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -8.83 Total: 10.91 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.16 Total: 4.88 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -0.42 Total: -61.22 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.18 Total: -20.12 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.51 -9.11 -42.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670582497.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.524 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds