Wall clock time and date at job start Tue Mar 31 2020 20:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08999 * 109.50231 * 304.93119 * 3 2 1 5 5 C 1.53195 * 109.49786 * 65.00162 * 3 2 1 6 6 N 1.46925 * 108.77471 * 174.58232 * 5 3 2 7 7 C 1.34780 * 120.63129 * 126.37081 * 6 5 3 8 8 O 1.21280 * 119.99663 * 359.97438 * 7 6 5 9 9 C 1.50691 * 120.00146 * 179.97438 * 7 6 5 10 10 N 1.46498 * 109.47267 * 179.97438 * 9 7 6 11 11 C 1.46502 * 120.00112 * 269.99922 * 10 9 7 12 12 C 1.34775 * 120.00001 * 90.00164 * 10 9 7 13 13 O 1.21286 * 119.99915 * 0.02562 * 12 10 9 14 14 C 1.50701 * 120.00070 * 180.02562 * 12 10 9 15 15 C 1.53000 * 117.49889 * 248.62055 * 14 12 10 16 16 C 1.53000 * 60.00009 * 252.50960 * 15 14 12 17 17 C 1.46930 * 118.74128 * 306.39082 * 6 5 3 18 18 C 1.53195 * 108.77326 * 53.60703 * 17 6 5 19 19 C 1.53035 * 109.31405 * 305.36811 * 18 17 6 20 20 H 1.08999 * 109.46009 * 181.38627 * 19 18 17 21 21 N 1.46501 * 109.46048 * 301.34366 * 19 18 17 22 22 C 1.36938 * 119.99906 * 275.07070 * 21 19 18 23 23 H 1.07996 * 120.00454 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99916 * 179.97438 * 22 21 19 25 25 N 1.31625 * 119.99921 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00045 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47268 * 60.00051 * 26 24 22 28 28 H 1.48501 * 109.47340 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47175 * 299.99994 * 26 24 22 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 33 33 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 34 34 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 35 35 H 1.08999 * 109.58411 * 294.36940 * 5 3 2 36 36 H 1.09002 * 109.58865 * 54.65312 * 5 3 2 37 37 H 1.09002 * 109.47344 * 300.00286 * 9 7 6 38 38 H 1.09003 * 109.47466 * 60.00145 * 9 7 6 39 39 H 1.09008 * 109.46974 * 90.00096 * 11 10 9 40 40 H 1.08999 * 109.47289 * 209.99388 * 11 10 9 41 41 H 1.08997 * 109.47541 * 330.00177 * 11 10 9 42 42 H 1.08999 * 115.54891 * 34.33198 * 14 12 10 43 43 H 1.08996 * 117.50107 * 0.02562 * 15 14 12 44 44 H 1.08997 * 117.49691 * 145.02325 * 15 14 12 45 45 H 1.08995 * 117.50497 * 252.51014 * 16 15 14 46 46 H 1.09004 * 117.49769 * 107.48893 * 16 15 14 47 47 H 1.08995 * 109.58617 * 173.39733 * 17 6 5 48 48 H 1.09002 * 109.58318 * 293.82502 * 17 6 5 49 49 H 1.08997 * 109.49596 * 65.32094 * 18 17 6 50 50 H 1.08999 * 109.49583 * 185.41557 * 18 17 6 51 51 H 0.97000 * 120.00167 * 95.06700 * 21 19 18 52 52 H 0.97000 * 119.99537 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9817 -0.8424 5 6 1.6350 2.1280 1.3088 6 7 2.2414 3.4656 1.3494 7 6 1.4813 4.5580 1.5629 8 8 0.2848 4.4422 1.7234 9 6 2.1183 5.9231 1.6024 10 7 1.0882 6.9358 1.8464 11 6 0.3943 7.5617 0.7180 12 6 0.7788 7.2917 3.1089 13 8 1.3535 6.7739 4.0431 14 6 -0.2813 8.3330 3.3600 15 6 0.1719 9.6804 3.9256 16 6 -0.5869 8.6935 4.8152 17 6 3.6921 3.5900 1.1523 18 6 4.0740 2.8881 -0.1547 19 6 3.5655 1.4450 -0.1217 20 1 3.8574 0.9360 -1.0402 21 7 4.1479 0.7486 1.0281 22 6 5.3861 0.1728 0.9245 23 1 5.9334 0.2325 -0.0046 24 6 5.9382 -0.4867 2.0141 25 7 5.2714 -0.5590 3.1467 26 14 7.6274 -1.2715 1.8731 27 1 8.6310 -0.2294 1.5383 28 1 7.9868 -1.9084 3.1655 29 1 7.6072 -2.3011 0.8032 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 0.5496 2.2173 1.3538 36 1 1.9885 1.5384 2.1547 37 1 2.8576 5.9562 2.4026 38 1 2.6061 6.1242 0.6485 39 1 -0.4940 6.9805 0.4702 40 1 0.1010 8.5758 0.9891 41 1 1.0596 7.5942 -0.1448 42 1 -1.1129 8.3366 2.6553 43 1 1.2368 9.8139 4.1158 44 1 -0.3615 10.5709 3.5931 45 1 -1.6193 8.9347 5.0678 46 1 -0.0211 8.1775 5.5910 47 1 3.9639 4.6439 1.0941 48 1 4.2155 3.1208 1.9854 49 1 3.6219 3.4139 -0.9956 50 1 5.1584 2.8893 -0.2649 51 1 3.6566 0.6953 1.8627 52 1 5.6574 -1.0195 3.9081 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670582497.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:23 Heat of formation + Delta-G solvation = -49.784328 kcal Electronic energy + Delta-G solvation = -30843.634777 eV Core-core repulsion = 26843.543849 eV Total energy + Delta-G solvation = -4000.090929 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.72539 -40.85342 -39.20303 -37.18502 -36.47504 -35.90416 -35.35867 -33.40537 -31.08146 -30.91318 -29.40213 -27.58250 -26.46887 -25.47281 -25.06331 -24.32091 -23.32214 -22.16641 -21.09920 -20.06549 -19.61689 -19.23312 -18.53265 -18.38626 -17.50887 -16.80919 -16.61566 -16.35054 -16.23769 -15.81631 -15.57789 -15.44437 -15.18318 -14.80743 -14.75175 -14.48248 -14.34689 -14.09987 -13.86467 -13.61845 -13.55356 -13.30739 -13.13184 -12.92298 -12.86718 -12.80969 -12.63574 -12.43931 -12.36620 -12.18314 -12.11970 -11.83913 -11.59564 -11.56778 -11.45562 -11.43471 -11.16017 -11.10592 -10.95559 -10.80646 -9.75432 -9.61336 -8.91652 -7.88011 -5.14459 1.32276 1.49112 1.50640 1.54868 1.56564 1.78350 2.17834 2.60094 2.89711 3.44926 3.47471 3.49318 3.80600 3.82301 3.85646 3.97365 4.01292 4.07630 4.08529 4.20778 4.24913 4.30242 4.33432 4.36895 4.42513 4.45913 4.59993 4.68467 4.70102 4.73109 4.83885 4.87055 4.87519 4.94927 4.99277 5.01954 5.04531 5.16861 5.20276 5.21907 5.22842 5.31416 5.35942 5.39942 5.51115 5.60805 5.66972 6.26203 6.33247 6.42324 7.03697 7.13189 7.40441 8.17976 8.40287 9.35297 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.002892 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.542878 B = 9681.169239 C =10610.524604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.088 4.088 4 H 0.089 0.911 5 C 0.126 3.874 6 N -0.600 5.600 7 C 0.494 3.506 8 O -0.580 6.580 9 C 0.099 3.901 10 N -0.597 5.597 11 C 0.075 3.925 12 C 0.534 3.466 13 O -0.592 6.592 14 C -0.201 4.201 15 C -0.126 4.126 16 C -0.162 4.162 17 C 0.117 3.883 18 C -0.140 4.140 19 C 0.170 3.830 20 H 0.051 0.949 21 N -0.726 5.726 22 C -0.224 4.224 23 H 0.078 0.922 24 C -0.077 4.077 25 N -0.972 5.972 26 Si 0.965 3.035 27 H -0.278 1.278 28 H -0.305 1.305 29 H -0.281 1.281 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.102 0.898 38 H 0.151 0.849 39 H 0.051 0.949 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.149 0.851 43 H 0.089 0.911 44 H 0.140 0.860 45 H 0.127 0.873 46 H 0.077 0.923 47 H 0.107 0.893 48 H 0.046 0.954 49 H 0.084 0.916 50 H 0.070 0.930 51 H 0.371 0.629 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.418 21.565 -9.581 26.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.108 4.108 4 H 0.108 0.892 5 C 0.003 3.997 6 N -0.332 5.332 7 C 0.282 3.718 8 O -0.461 6.461 9 C -0.028 4.028 10 N -0.328 5.328 11 C -0.066 4.066 12 C 0.324 3.676 13 O -0.472 6.472 14 C -0.221 4.221 15 C -0.163 4.163 16 C -0.200 4.200 17 C -0.005 4.005 18 C -0.180 4.180 19 C 0.062 3.938 20 H 0.069 0.931 21 N -0.367 5.367 22 C -0.356 4.356 23 H 0.096 0.904 24 C -0.269 4.269 25 N -0.624 5.624 26 Si 0.795 3.205 27 H -0.204 1.204 28 H -0.232 1.232 29 H -0.207 1.207 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.120 0.880 38 H 0.169 0.831 39 H 0.070 0.930 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.167 0.833 43 H 0.108 0.892 44 H 0.158 0.842 45 H 0.145 0.855 46 H 0.096 0.904 47 H 0.125 0.875 48 H 0.064 0.936 49 H 0.103 0.897 50 H 0.088 0.912 51 H 0.204 0.796 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.574 21.188 -9.128 25.811 hybrid contribution 1.018 -1.491 0.929 2.030 sum -10.555 19.698 -8.199 23.804 Atomic orbital electron populations 1.21777 0.94860 1.01870 1.01746 1.21351 0.95993 0.95418 1.01697 1.21636 0.95992 0.96226 0.96911 0.89240 1.21451 0.98295 0.82248 0.97697 1.48191 1.08973 1.06177 1.69877 1.21706 0.86996 0.87629 0.75463 1.90622 1.16573 1.87156 1.51725 1.21475 0.90991 0.84037 1.06250 1.47511 1.39270 1.38834 1.07138 1.22131 0.97699 0.98742 0.88061 1.20486 0.82632 0.82442 0.82000 1.90687 1.55024 1.57359 1.44153 1.22254 1.00805 0.97795 1.01276 1.23055 1.01401 0.91482 1.00400 1.23025 1.03079 1.02575 0.91277 1.21734 0.78233 1.01871 0.98703 1.22394 1.01628 0.97497 0.96506 1.20493 0.90902 0.91791 0.90661 0.93145 1.42626 1.18241 1.64403 1.11456 1.19554 0.94228 1.25069 0.96762 0.90389 1.25429 1.01928 1.03400 0.96109 1.69820 1.39688 1.49949 1.02900 0.85332 0.80891 0.78446 0.75803 1.20393 1.23181 1.20741 0.92209 0.93705 0.91525 0.94130 0.91615 0.90216 0.94309 0.88003 0.83107 0.93017 0.87961 0.88414 0.83335 0.89198 0.84189 0.85509 0.90397 0.87461 0.93562 0.89708 0.91179 0.79594 0.94518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.67 71.98 0.70 -3.21 16 2 C -0.11 -3.44 5.19 30.60 0.16 -3.28 16 3 C -0.09 -2.79 2.14 -10.71 -0.02 -2.81 16 4 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 5 C 0.13 4.49 5.02 86.36 0.43 4.93 16 6 N -0.60 -19.52 2.97 -818.90 -2.43 -21.95 16 7 C 0.49 15.89 7.77 87.65 0.68 16.57 16 8 O -0.58 -22.61 15.84 -3.03 -0.05 -22.65 16 9 C 0.10 2.35 4.28 85.63 0.37 2.71 16 10 N -0.60 -13.40 2.36 -851.13 -2.01 -15.41 16 11 C 0.07 0.95 10.05 127.77 1.28 2.23 16 12 C 0.53 14.62 7.46 87.66 0.65 15.28 16 13 O -0.59 -22.25 15.84 -3.05 -0.05 -22.30 16 14 C -0.20 -3.60 4.80 -11.54 -0.06 -3.66 16 15 C -0.13 -1.59 10.23 30.59 0.31 -1.28 16 16 C -0.16 -2.83 10.04 30.59 0.31 -2.52 16 17 C 0.12 3.53 6.08 86.36 0.53 4.05 16 18 C -0.14 -4.09 5.78 30.67 0.18 -3.91 16 19 C 0.17 6.05 2.53 45.02 0.11 6.17 16 20 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 21 N -0.73 -33.94 3.72 -322.81 -1.20 -35.14 16 22 C -0.22 -11.71 9.93 84.03 0.83 -10.87 16 23 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 24 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 25 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 26 Si 0.96 45.67 29.55 68.60 2.03 47.70 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 28 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 29 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.28 6.70 -2.39 -0.02 1.26 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 33 H 0.04 1.60 7.69 -2.39 -0.02 1.58 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.91 5.72 -2.39 -0.01 2.89 16 36 H 0.04 1.65 6.65 -2.39 -0.02 1.63 16 37 H 0.10 2.71 7.22 -2.39 -0.02 2.69 16 38 H 0.15 2.17 7.44 -2.39 -0.02 2.15 16 39 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.10 0.75 6.64 -2.39 -0.02 0.73 16 41 H 0.10 0.75 7.89 -2.39 -0.02 0.73 16 42 H 0.15 1.90 7.26 -2.39 -0.02 1.88 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.08 1.84 7.67 -2.38 -0.02 1.83 16 47 H 0.11 2.36 5.93 -2.39 -0.01 2.35 16 48 H 0.05 1.80 7.74 -2.39 -0.02 1.78 16 49 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.37 19.42 5.94 -92.71 -0.55 18.87 16 52 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -78.39 407.28 3.86 -74.53 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: 0.36 Total: 37.76 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 6.93 Total: 16.56 kcal Atomic # 7 Polarization: -126.23 SS G_CDS: -5.36 Total: -131.59 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -0.10 Total: -44.95 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -78.39 3.86 -74.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670582497.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.747 kcal (2) G-P(sol) polarization free energy of solvation -78.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds