Wall clock time and date at job start Tue Mar 31 2020 20:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47127 * 2 1 4 4 H 1.09001 * 109.49539 * 55.06148 * 3 2 1 5 5 C 1.53190 * 109.49647 * 295.00006 * 3 2 1 6 6 N 1.46923 * 108.77809 * 185.41432 * 5 3 2 7 7 C 1.34784 * 120.62964 * 233.58685 * 6 5 3 8 8 O 1.21279 * 119.99925 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99961 * 179.97438 * 7 6 5 10 10 N 1.46497 * 109.47128 * 180.02562 * 9 7 6 11 11 C 1.46499 * 119.99567 * 269.99933 * 10 9 7 12 12 C 1.34771 * 120.00021 * 90.00051 * 10 9 7 13 13 O 1.21277 * 120.00598 * 359.97438 * 12 10 9 14 14 C 1.50707 * 119.99635 * 179.97438 * 12 10 9 15 15 C 1.52997 * 117.50109 * 248.74358 * 14 12 10 16 16 C 1.53006 * 117.49603 * 180.08212 * 14 12 10 17 17 C 1.46927 * 118.73985 * 53.85904 * 6 5 3 18 18 C 1.53626 * 108.53906 * 306.09366 * 17 6 5 19 19 C 1.53036 * 109.50018 * 175.16097 * 3 2 1 20 20 H 1.09009 * 109.45909 * 61.30882 * 19 3 2 21 21 N 1.46493 * 109.45942 * 301.33822 * 19 3 2 22 22 C 1.36948 * 119.99998 * 154.99940 * 21 19 3 23 23 H 1.07996 * 119.99762 * 0.02562 * 22 21 19 24 24 C 1.38812 * 119.99902 * 179.97438 * 22 21 19 25 25 N 1.31623 * 120.00137 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99861 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47092 * 60.00193 * 26 24 22 28 28 H 1.48502 * 109.46827 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46805 * 300.00000 * 26 24 22 30 30 H 1.08991 * 109.47130 * 60.00279 * 1 2 3 31 31 H 1.09002 * 109.46943 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47173 * 299.99635 * 1 2 3 33 33 H 1.08996 * 109.47491 * 239.99698 * 2 1 3 34 34 H 1.09005 * 109.47103 * 119.99752 * 2 1 3 35 35 H 1.09007 * 109.58645 * 65.62414 * 5 3 2 36 36 H 1.08998 * 109.70504 * 305.27278 * 5 3 2 37 37 H 1.09004 * 109.46932 * 300.00223 * 9 7 6 38 38 H 1.08997 * 109.47392 * 59.99562 * 9 7 6 39 39 H 1.08993 * 109.47642 * 90.00249 * 11 10 9 40 40 H 1.09004 * 109.46894 * 210.00022 * 11 10 9 41 41 H 1.08997 * 109.47305 * 329.99583 * 11 10 9 42 42 H 1.08996 * 115.55034 * 34.42315 * 14 12 10 43 43 H 1.08999 * 117.49582 * 0.02562 * 15 14 12 44 44 H 1.08998 * 117.50085 * 145.02015 * 15 14 12 45 45 H 1.08997 * 117.50038 * 214.97769 * 16 14 12 46 46 H 1.08994 * 117.49803 * 359.97438 * 16 14 12 47 47 H 1.08998 * 109.58645 * 65.92691 * 17 6 5 48 48 H 1.09001 * 109.58579 * 186.35848 * 17 6 5 49 49 H 1.08990 * 109.63926 * 294.86483 * 18 17 6 50 50 H 1.09009 * 109.45677 * 174.73785 * 18 17 6 51 51 H 0.97000 * 120.00421 * 334.99516 * 21 19 3 52 52 H 0.96996 * 120.00161 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6064 1.9816 0.8423 5 6 1.6350 2.1279 -1.3088 6 7 2.2414 3.4656 -1.3494 7 6 1.4815 4.5579 -1.5639 8 8 0.2852 4.4419 -1.7260 9 6 2.1183 5.9232 -1.6022 10 7 1.0883 6.9357 -1.8474 11 6 0.7539 7.3226 -3.2203 12 6 0.4485 7.5111 -0.8102 13 8 0.7251 7.1905 0.3263 14 6 -0.6106 8.5531 -1.0626 15 6 -0.2956 9.9938 -0.6550 16 6 -1.2990 9.1704 0.1565 17 6 3.6929 3.5893 -1.1579 18 6 4.0740 2.8881 0.1548 19 6 3.5655 1.4450 0.1217 20 1 3.9989 0.9270 -0.7339 21 7 3.9577 0.7608 1.3563 22 6 5.1962 0.1850 1.4562 23 1 5.8839 0.2356 0.6250 24 6 5.5680 -0.4628 2.6263 25 7 4.7301 -0.5240 3.6395 26 14 7.2576 -1.2476 2.7628 27 1 8.3024 -0.2082 2.5807 28 1 7.4070 -1.8709 4.1024 29 1 7.4063 -2.2881 1.7138 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5496 2.2173 -1.3538 36 1 1.9887 1.5405 -2.1560 37 1 2.6048 6.1241 -0.6477 38 1 2.8587 5.9565 -2.4014 39 1 -0.0451 6.6823 -3.5939 40 1 0.4237 8.3614 -3.2348 41 1 1.6341 7.2123 -3.8536 42 1 -1.2129 8.4038 -1.9587 43 1 0.6778 10.1880 -0.2047 44 1 -0.6909 10.7923 -1.2828 45 1 -2.3540 9.4276 0.0622 46 1 -0.9862 8.8225 1.1409 47 1 4.2130 3.1178 -1.9917 48 1 3.9657 4.6432 -1.1033 49 1 3.6218 3.4139 0.9956 50 1 5.1584 2.8892 0.2655 51 1 3.3403 0.7157 2.1030 52 1 4.9898 -0.9770 4.4569 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670582503.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:32 Heat of formation + Delta-G solvation = -30.927188 kcal Electronic energy + Delta-G solvation = -30504.828861 eV Core-core repulsion = 26505.555639 eV Total energy + Delta-G solvation = -3999.273222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.66751 -39.71206 -37.82044 -36.43015 -35.52432 -34.72233 -33.75989 -31.70195 -30.01191 -29.45619 -28.18718 -26.84016 -25.13648 -24.00566 -23.52952 -22.74796 -22.63421 -20.80758 -20.04436 -19.31172 -18.80006 -17.73606 -17.37807 -17.04342 -16.50691 -15.71564 -15.45957 -15.12894 -14.97769 -14.65791 -14.28541 -14.00051 -13.80639 -13.56177 -13.30264 -13.23170 -13.14690 -13.03129 -12.89424 -12.72073 -12.56077 -12.15620 -11.95503 -11.84002 -11.78399 -11.59020 -11.26935 -10.92107 -10.91533 -10.84884 -10.78989 -10.68567 -10.33347 -10.22336 -10.13816 -10.03371 -9.97623 -9.70863 -9.57910 -8.91169 -8.80787 -8.45087 -6.95563 -5.76415 -3.05316 2.24430 2.61111 2.67428 3.20793 3.42835 3.47449 3.48753 3.58532 4.19480 4.47652 4.51192 4.57913 4.58411 4.73519 4.81884 4.93537 5.01532 5.15940 5.21435 5.24684 5.26110 5.28921 5.36476 5.43172 5.46733 5.47667 5.56244 5.61452 5.63519 5.69678 5.70286 5.84866 5.90920 6.02045 6.09452 6.15187 6.18059 6.33918 6.38998 6.41755 6.47978 6.59498 6.71054 6.84684 6.98002 7.08267 7.08659 7.51272 7.68338 7.98426 8.24868 8.41672 9.52886 10.10754 10.45583 11.45936 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.002596 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.608215 B =10784.306957 C =11283.308461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.069 0.931 5 C 0.121 3.879 6 N -0.605 5.605 7 C 0.499 3.501 8 O -0.541 6.541 9 C 0.097 3.903 10 N -0.598 5.598 11 C 0.081 3.919 12 C 0.549 3.451 13 O -0.532 6.532 14 C -0.192 4.192 15 C -0.153 4.153 16 C -0.148 4.148 17 C 0.106 3.894 18 C -0.153 4.153 19 C 0.185 3.815 20 H 0.047 0.953 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.061 0.939 50 H 0.076 0.924 51 H 0.384 0.616 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.859 18.306 -16.089 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.088 0.912 5 C -0.002 4.002 6 N -0.339 5.339 7 C 0.286 3.714 8 O -0.418 6.418 9 C -0.029 4.029 10 N -0.331 5.331 11 C -0.062 4.062 12 C 0.337 3.663 13 O -0.408 6.408 14 C -0.213 4.213 15 C -0.191 4.191 16 C -0.185 4.185 17 C -0.017 4.017 18 C -0.194 4.194 19 C 0.074 3.926 20 H 0.065 0.935 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.143 0.857 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.127 0.873 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.080 0.920 50 H 0.095 0.905 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.168 17.984 -15.574 25.495 hybrid contribution 0.900 -0.606 0.261 1.116 sum -8.268 17.378 -15.312 24.593 Atomic orbital electron populations 1.21840 0.96855 1.00977 1.01304 1.21445 0.94340 0.95713 1.03422 1.21779 0.97656 0.96228 0.96797 0.91209 1.21724 0.99366 0.81381 0.97728 1.48189 1.08476 1.06745 1.70461 1.21042 0.87385 0.86441 0.76566 1.90657 1.14760 1.86384 1.50039 1.21387 0.90486 0.85861 1.05182 1.47287 1.39314 1.39392 1.07093 1.21843 1.01766 1.00836 0.81741 1.19666 0.81057 0.81301 0.84246 1.90725 1.64760 1.63350 1.21983 1.22179 1.01832 0.94766 1.02480 1.22956 1.01576 0.91295 1.03248 1.22984 0.98163 1.01330 0.96022 1.21982 0.79335 1.00958 0.99459 1.22773 1.02205 0.99337 0.95068 1.20167 0.90739 0.90471 0.91203 0.93465 1.42410 1.16482 1.64386 1.12751 1.19160 0.91808 1.27442 0.98575 0.91311 1.24732 0.98111 1.01564 0.96437 1.69650 1.35316 1.48273 1.04722 0.86303 0.84192 0.79156 0.76718 1.21347 1.21770 1.21338 0.93293 0.93179 0.92994 0.92495 0.89789 0.89334 0.91755 0.86769 0.87533 0.92092 0.90558 0.90996 0.85741 0.88235 0.87778 0.87855 0.87317 0.91241 0.90728 0.92015 0.90533 0.78175 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.67 37.16 0.36 -1.87 16 2 C -0.11 -1.86 5.31 -26.73 -0.14 -2.00 16 3 C -0.10 -1.78 1.93 -90.50 -0.17 -1.95 16 4 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 5 C 0.12 1.81 5.32 -3.71 -0.02 1.79 16 6 N -0.61 -8.64 2.97 -172.50 -0.51 -9.16 16 7 C 0.50 7.41 7.77 -10.98 -0.09 7.33 16 8 O -0.54 -9.81 15.84 5.56 0.09 -9.72 16 9 C 0.10 1.11 4.28 -5.20 -0.02 1.09 16 10 N -0.60 -6.67 2.36 -182.96 -0.43 -7.10 16 11 C 0.08 0.57 10.05 59.85 0.60 1.18 16 12 C 0.55 7.22 7.46 -10.98 -0.08 7.13 16 13 O -0.53 -9.25 15.84 5.56 0.09 -9.16 16 14 C -0.19 -1.78 4.79 -91.77 -0.44 -2.22 16 15 C -0.15 -1.09 10.24 -26.69 -0.27 -1.37 16 16 C -0.15 -1.29 10.05 -26.69 -0.27 -1.56 16 17 C 0.11 1.34 6.37 -3.48 -0.02 1.32 16 18 C -0.15 -2.56 5.67 -26.38 -0.15 -2.71 16 19 C 0.18 3.50 2.19 -67.89 -0.15 3.35 16 20 H 0.05 0.91 8.08 -51.92 -0.42 0.49 16 21 N -0.72 -17.36 4.33 -53.39 -0.23 -17.60 16 22 C -0.24 -6.39 9.93 -15.05 -0.15 -6.54 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 26 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 30 H 0.05 0.66 6.70 -51.93 -0.35 0.32 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.67 7.22 -51.93 -0.37 1.29 16 35 H 0.09 1.42 5.72 -51.93 -0.30 1.13 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.11 1.41 6.98 -51.93 -0.36 1.04 16 38 H 0.11 0.82 7.68 -51.93 -0.40 0.42 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.38 6.64 -51.93 -0.34 0.04 16 41 H 0.07 0.36 7.89 -51.93 -0.41 -0.04 16 42 H 0.12 0.91 7.27 -51.93 -0.38 0.54 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.11 1.17 7.67 -51.93 -0.40 0.78 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.07 0.75 5.93 -51.93 -0.31 0.45 16 49 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 50 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 51 H 0.38 10.11 7.51 -40.82 -0.31 9.80 16 52 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 410.93 15.07 6.19 6.19 Total: -1.00 -34.77 410.93 -9.18 -43.96 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -8.97 Total: 10.12 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.11 Total: 2.53 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.45 Total: -60.98 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.18 Total: -18.88 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.77 -9.18 -43.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670582503.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.028 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds