Wall clock time and date at job start Tue Mar 31 2020 20:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47127 * 2 1 4 4 H 1.09001 * 109.49539 * 55.06148 * 3 2 1 5 5 C 1.53190 * 109.49647 * 295.00006 * 3 2 1 6 6 N 1.46923 * 108.77809 * 185.41432 * 5 3 2 7 7 C 1.34784 * 120.62964 * 233.58685 * 6 5 3 8 8 O 1.21279 * 119.99925 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99961 * 179.97438 * 7 6 5 10 10 N 1.46497 * 109.47128 * 180.02562 * 9 7 6 11 11 C 1.46499 * 119.99567 * 269.99933 * 10 9 7 12 12 C 1.34771 * 120.00021 * 90.00051 * 10 9 7 13 13 O 1.21277 * 120.00598 * 359.97438 * 12 10 9 14 14 C 1.50707 * 119.99635 * 179.97438 * 12 10 9 15 15 C 1.52997 * 117.50109 * 248.74358 * 14 12 10 16 16 C 1.53006 * 117.49603 * 180.08212 * 14 12 10 17 17 C 1.46927 * 118.73985 * 53.85904 * 6 5 3 18 18 C 1.53626 * 108.53906 * 306.09366 * 17 6 5 19 19 C 1.53036 * 109.50018 * 175.16097 * 3 2 1 20 20 H 1.09009 * 109.45909 * 61.30882 * 19 3 2 21 21 N 1.46493 * 109.45942 * 301.33822 * 19 3 2 22 22 C 1.36948 * 119.99998 * 154.99940 * 21 19 3 23 23 H 1.07996 * 119.99762 * 0.02562 * 22 21 19 24 24 C 1.38812 * 119.99902 * 179.97438 * 22 21 19 25 25 N 1.31623 * 120.00137 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99861 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47092 * 60.00193 * 26 24 22 28 28 H 1.48502 * 109.46827 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46805 * 300.00000 * 26 24 22 30 30 H 1.08991 * 109.47130 * 60.00279 * 1 2 3 31 31 H 1.09002 * 109.46943 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47173 * 299.99635 * 1 2 3 33 33 H 1.08996 * 109.47491 * 239.99698 * 2 1 3 34 34 H 1.09005 * 109.47103 * 119.99752 * 2 1 3 35 35 H 1.09007 * 109.58645 * 65.62414 * 5 3 2 36 36 H 1.08998 * 109.70504 * 305.27278 * 5 3 2 37 37 H 1.09004 * 109.46932 * 300.00223 * 9 7 6 38 38 H 1.08997 * 109.47392 * 59.99562 * 9 7 6 39 39 H 1.08993 * 109.47642 * 90.00249 * 11 10 9 40 40 H 1.09004 * 109.46894 * 210.00022 * 11 10 9 41 41 H 1.08997 * 109.47305 * 329.99583 * 11 10 9 42 42 H 1.08996 * 115.55034 * 34.42315 * 14 12 10 43 43 H 1.08999 * 117.49582 * 0.02562 * 15 14 12 44 44 H 1.08998 * 117.50085 * 145.02015 * 15 14 12 45 45 H 1.08997 * 117.50038 * 214.97769 * 16 14 12 46 46 H 1.08994 * 117.49803 * 359.97438 * 16 14 12 47 47 H 1.08998 * 109.58645 * 65.92691 * 17 6 5 48 48 H 1.09001 * 109.58579 * 186.35848 * 17 6 5 49 49 H 1.08990 * 109.63926 * 294.86483 * 18 17 6 50 50 H 1.09009 * 109.45677 * 174.73785 * 18 17 6 51 51 H 0.97000 * 120.00421 * 334.99516 * 21 19 3 52 52 H 0.96996 * 120.00161 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6064 1.9816 0.8423 5 6 1.6350 2.1279 -1.3088 6 7 2.2414 3.4656 -1.3494 7 6 1.4815 4.5579 -1.5639 8 8 0.2852 4.4419 -1.7260 9 6 2.1183 5.9232 -1.6022 10 7 1.0883 6.9357 -1.8474 11 6 0.7539 7.3226 -3.2203 12 6 0.4485 7.5111 -0.8102 13 8 0.7251 7.1905 0.3263 14 6 -0.6106 8.5531 -1.0626 15 6 -0.2956 9.9938 -0.6550 16 6 -1.2990 9.1704 0.1565 17 6 3.6929 3.5893 -1.1579 18 6 4.0740 2.8881 0.1548 19 6 3.5655 1.4450 0.1217 20 1 3.9989 0.9270 -0.7339 21 7 3.9577 0.7608 1.3563 22 6 5.1962 0.1850 1.4562 23 1 5.8839 0.2356 0.6250 24 6 5.5680 -0.4628 2.6263 25 7 4.7301 -0.5240 3.6395 26 14 7.2576 -1.2476 2.7628 27 1 8.3024 -0.2082 2.5807 28 1 7.4070 -1.8709 4.1024 29 1 7.4063 -2.2881 1.7138 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5496 2.2173 -1.3538 36 1 1.9887 1.5405 -2.1560 37 1 2.6048 6.1241 -0.6477 38 1 2.8587 5.9565 -2.4014 39 1 -0.0451 6.6823 -3.5939 40 1 0.4237 8.3614 -3.2348 41 1 1.6341 7.2123 -3.8536 42 1 -1.2129 8.4038 -1.9587 43 1 0.6778 10.1880 -0.2047 44 1 -0.6909 10.7923 -1.2828 45 1 -2.3540 9.4276 0.0622 46 1 -0.9862 8.8225 1.1409 47 1 4.2130 3.1178 -1.9917 48 1 3.9657 4.6432 -1.1033 49 1 3.6218 3.4139 0.9956 50 1 5.1584 2.8892 0.2655 51 1 3.3403 0.7157 2.1030 52 1 4.9898 -0.9770 4.4569 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670582503.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:31 Heat of formation + Delta-G solvation = -53.146001 kcal Electronic energy + Delta-G solvation = -30505.792341 eV Core-core repulsion = 26505.555639 eV Total energy + Delta-G solvation = -4000.236702 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.70652 -40.80982 -39.14572 -37.19019 -36.49158 -36.18903 -35.34902 -33.45790 -31.14372 -30.99890 -29.40460 -27.57989 -26.63770 -25.34340 -24.69202 -24.04635 -23.33111 -22.23913 -21.33255 -20.47374 -19.80769 -19.06108 -18.55049 -18.44737 -17.50243 -16.86033 -16.70577 -16.45610 -16.09510 -15.75115 -15.55016 -15.42163 -15.15498 -14.84958 -14.74564 -14.50937 -14.35974 -14.05222 -13.89145 -13.61475 -13.55347 -13.27849 -13.13501 -13.05416 -12.89268 -12.79774 -12.67594 -12.55323 -12.44781 -12.22159 -12.08843 -11.85846 -11.60636 -11.57312 -11.55049 -11.44032 -11.17741 -11.11742 -10.95865 -10.82491 -9.75452 -9.68107 -8.96798 -7.90536 -5.18751 1.31424 1.47945 1.50671 1.54023 1.56537 1.78130 2.17256 2.58135 2.89020 3.41763 3.46524 3.49014 3.75142 3.80023 3.81520 3.96450 3.98567 4.04916 4.07665 4.20325 4.23621 4.30133 4.32001 4.33692 4.39536 4.43766 4.60488 4.70009 4.71747 4.72640 4.77427 4.81529 4.86310 4.87852 4.95117 4.97875 5.01517 5.03083 5.12002 5.20891 5.23858 5.33213 5.37630 5.44723 5.51166 5.57278 5.64551 6.25366 6.29958 6.37284 7.03437 7.12899 7.36191 8.12280 8.35775 9.33071 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.002596 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.608215 B =10784.306957 C =11283.308461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.094 4.094 4 H 0.040 0.960 5 C 0.128 3.872 6 N -0.607 5.607 7 C 0.494 3.506 8 O -0.579 6.579 9 C 0.097 3.903 10 N -0.598 5.598 11 C 0.075 3.925 12 C 0.534 3.466 13 O -0.591 6.591 14 C -0.200 4.200 15 C -0.127 4.127 16 C -0.163 4.163 17 C 0.114 3.886 18 C -0.146 4.146 19 C 0.180 3.820 20 H 0.054 0.946 21 N -0.733 5.733 22 C -0.230 4.230 23 H 0.081 0.919 24 C -0.080 4.080 25 N -0.973 5.973 26 Si 0.970 3.030 27 H -0.277 1.277 28 H -0.302 1.302 29 H -0.277 1.277 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.155 0.845 39 H 0.051 0.949 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.149 0.851 43 H 0.089 0.911 44 H 0.140 0.860 45 H 0.126 0.874 46 H 0.077 0.923 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.035 0.965 50 H 0.071 0.929 51 H 0.368 0.632 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.171 20.175 -19.934 29.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.114 4.114 4 H 0.058 0.942 5 C 0.005 3.995 6 N -0.339 5.339 7 C 0.283 3.717 8 O -0.459 6.459 9 C -0.030 4.030 10 N -0.328 5.328 11 C -0.066 4.066 12 C 0.325 3.675 13 O -0.472 6.472 14 C -0.221 4.221 15 C -0.164 4.164 16 C -0.201 4.201 17 C -0.009 4.009 18 C -0.187 4.187 19 C 0.072 3.928 20 H 0.072 0.928 21 N -0.371 5.371 22 C -0.361 4.361 23 H 0.099 0.901 24 C -0.271 4.271 25 N -0.625 5.625 26 Si 0.800 3.200 27 H -0.203 1.203 28 H -0.229 1.229 29 H -0.203 1.203 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.121 0.879 38 H 0.172 0.828 39 H 0.070 0.930 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.167 0.833 43 H 0.108 0.892 44 H 0.158 0.842 45 H 0.144 0.856 46 H 0.096 0.904 47 H 0.117 0.883 48 H 0.125 0.875 49 H 0.054 0.946 50 H 0.089 0.911 51 H 0.199 0.801 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.458 19.889 -19.522 29.124 hybrid contribution 0.635 -1.169 1.414 1.941 sum -7.824 18.719 -18.108 27.194 Atomic orbital electron populations 1.21772 0.95150 1.01917 1.01418 1.21348 0.95837 0.95137 1.02078 1.21629 0.96152 0.96426 0.97178 0.94190 1.21587 0.98995 0.82130 0.96817 1.48277 1.09187 1.06395 1.70074 1.21715 0.86985 0.87572 0.75475 1.90637 1.16455 1.87012 1.51801 1.21528 0.91215 0.83802 1.06443 1.47510 1.38568 1.38399 1.08368 1.22129 1.02855 1.02012 0.79653 1.20455 0.81435 0.81793 0.83855 1.90693 1.66709 1.65436 1.24318 1.22264 1.01375 0.95038 1.03428 1.23064 1.00572 0.90697 1.02047 1.23033 0.99910 1.02503 0.94627 1.22065 0.78391 1.02768 0.97633 1.22577 1.01435 0.97754 0.96892 1.20414 0.92004 0.91304 0.89106 0.92775 1.42618 1.15567 1.65005 1.13928 1.19585 0.92511 1.25647 0.98396 0.90139 1.25536 1.01731 1.03323 0.96541 1.69832 1.37294 1.50146 1.05187 0.85254 0.80221 0.78431 0.76122 1.20326 1.22893 1.20339 0.91802 0.91835 0.94211 0.91198 0.93578 0.90311 0.89444 0.87917 0.82801 0.93005 0.88139 0.88271 0.83339 0.89196 0.84225 0.85571 0.90438 0.88312 0.87507 0.94644 0.91073 0.80066 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 9.67 71.98 0.70 -3.56 16 2 C -0.11 -3.60 5.31 30.59 0.16 -3.43 16 3 C -0.09 -3.24 1.93 -10.72 -0.02 -3.27 16 4 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 5 C 0.13 3.69 5.32 86.36 0.46 4.15 16 6 N -0.61 -16.27 2.97 -818.06 -2.43 -18.70 16 7 C 0.49 14.00 7.77 87.66 0.68 14.68 16 8 O -0.58 -20.74 15.84 -3.03 -0.05 -20.79 16 9 C 0.10 1.99 4.28 85.63 0.37 2.35 16 10 N -0.60 -12.20 2.36 -851.15 -2.01 -14.21 16 11 C 0.07 0.81 10.05 127.77 1.28 2.09 16 12 C 0.53 13.86 7.46 87.66 0.65 14.52 16 13 O -0.59 -21.45 15.84 -3.02 -0.05 -21.50 16 14 C -0.20 -3.41 4.79 -11.54 -0.06 -3.46 16 15 C -0.13 -1.51 10.24 30.62 0.31 -1.20 16 16 C -0.16 -2.76 10.05 30.62 0.31 -2.46 16 17 C 0.11 2.56 6.37 86.51 0.55 3.11 16 18 C -0.15 -4.81 5.67 30.82 0.17 -4.63 16 19 C 0.18 6.83 2.19 45.02 0.10 6.93 16 20 H 0.05 2.00 8.08 -2.38 -0.02 1.98 16 21 N -0.73 -36.38 4.33 -322.82 -1.40 -37.78 16 22 C -0.23 -12.38 9.93 84.03 0.83 -11.55 16 23 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 24 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 25 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 26 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 27 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 28 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 29 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 30 H 0.06 1.68 6.70 -2.39 -0.02 1.67 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.05 1.92 7.22 -2.38 -0.02 1.90 16 35 H 0.08 2.48 5.72 -2.38 -0.01 2.47 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.10 2.42 6.98 -2.38 -0.02 2.40 16 38 H 0.15 1.63 7.68 -2.39 -0.02 1.62 16 39 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 0.60 6.64 -2.39 -0.02 0.58 16 41 H 0.10 0.55 7.89 -2.39 -0.02 0.53 16 42 H 0.15 1.76 7.27 -2.39 -0.02 1.74 16 43 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.08 1.80 7.67 -2.39 -0.02 1.79 16 47 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.11 1.77 5.93 -2.39 -0.01 1.76 16 49 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.07 2.42 8.14 -2.38 -0.02 2.41 16 51 H 0.37 20.46 7.51 -92.71 -0.70 19.77 16 52 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -81.36 410.93 3.56 -77.79 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: 0.21 Total: 37.13 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 6.97 Total: 10.19 kcal Atomic # 7 Polarization: -125.26 SS G_CDS: -5.55 Total: -130.81 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -0.10 Total: -42.29 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -81.36 3.56 -77.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670582503.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.645 kcal (2) G-P(sol) polarization free energy of solvation -81.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds